|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072424 ID=TCONS_00072424|Name=TCONS_00072424|organism=Clytia hemisphaerica|type=transcript|length=1370bp ACCTCCTGTCTATCAAAGTTAAGCCATTGCACAACTTTAGATTCATGGAC CTTATAAAAGCTCACTAGATTTTGCTTCGGACCAAACATCTTCTACTTTC TGAAGTACAGCAAACAAAATGGCCTCATCCAAAACATTCATCTTTTTGCT GGTTGGCTTGGTATGCCGCGTGGCAGCATGGAACTCCAATATGGAAAAGG AAGAACTCTTTGAAGGTGATATTATCCTGAATGATTTTCAGAAGAAAGCT TTGAGTTCACCGCTTGGTTATGGCCTCACATCCAAGAAGGGTTTCAATAA ACATTGGCCAAAAGGAGTTCCAATTGCGTATGAAATGTCAGCAGAGTTTG CTAGAGATGCTTCGAAGAAAGCAAAGATTGAGGCAGCATTCAGAGATTAT GAACAAAAGACATGCTTGAGATTCGTACCGAGGACTAACCAACAACAATT CATGCATTTCAGAAGACAAGGACAGGGttgtTATACATCAGTTGGTATGC AGTATCGTGGCAATTTCATCAATCTAGGGGTCGGTTGTTTCACACACGGC GTTTTGATTCACGAAATCATGCATGGTCTTGGGGTTTGGCACGAGCAAAG CAGAGGTGATCGAGACCAACATATCAAGATTAATTACCATAACATGAAAT GCTGTAAAAGTCAATTTACAGAGAGAGACTACACCATCGACAGCCTTGGG TTTCCATACGATTTGAAAAGCGTGATGCATTATGGACCCTGGGCTTTCTC AAACGGAAATGGCCCAACCATTGAACCCCTGAATAAAAGGGAAAGAATTT ATAACAACGGACAATTTTCAGATATTGATATTCAACAATTGAATGCAATG TACTGCGGTGGACCACATGGATCAGGCACCACAACGACCAAAGCACCGGT CACTTCTGCACCACGTGGCAAGCTCTTTAAACAAGTCAGCAGCAACAAAT GTCTTGGTCTTGATCACAACGATAACCTCATTTTCACCAGTCGTTGTTAA ACACGCTTTGAAGCAATGGAAGGAAAATTATTCCAGTCTAATGTACCAGG AGCTAAATGCGCCGAAGCTTTGAGCAACAACAGTGAATCTGGGATTCGTT TCAGAGCTAATTGCGATCAAGGCTTCAGAAAAGTTCAAAAAGGCAGATAT TTTGTCCTTCAACACAAACAAACTGGCAAATGTATTCATCCTAACCGAGG ATCATCCAACCCTTCTGATGGAACCAAAGCTGTTATTTACCATGATTGCA ATTCTGGCTCACGTATTCAGTTCAGAGAAGAATAGTTTGACCACTACAGT AATAATCGATGTATTAAATTATAGAGAAATTTTTAGGTGAAAGATAGATT GCTACCACCATaaagttaaa Run BLAST on NCBI protein sequence of TCONS_00072424-protein >TCONS_00072424-protein ID=TCONS_00072424-protein|Name=TCONS_00072424-protein|organism=Clytia hemisphaerica|type=polypeptide|length=293bp
MASSKTFIFLLVGLVCRVAAWNSNMEKEELFEGDIILNDFQKKALSSPLG YGLTSKKGFNKHWPKGVPIAYEMSAEFARDASKKAKIEAAFRDYEQKTCL RFVPRTNQQQFMHFRRQGQGCYTSVGMQYRGNFINLGVGCFTHGVLIHEI MHGLGVWHEQSRGDRDQHIKINYHNMKCCKSQFTERDYTIDSLGFPYDLK SVMHYGPWAFSNGNGPTIEPLNKRERIYNNGQFSDIDIQQLNAMYCGGPH GSGTTTTKAPVTSAPRGKLFKQVSSNKCLGLDHNDNLIFTSRC Run BLAST on NCBI transcript from alignment at scaffold_77:249774..253475- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072424 ID=TCONS_00072424|Name=TCONS_00072424|organism=Clytia hemisphaerica|type=transcript|length=3702bp|location=Sequence derived from alignment at scaffold_77:249774..253475- (Clytia hemisphaerica) ACCTCCTGTCTATCAAAGTTAAGCCATTGCACAACTTTAGATTCATGGAC
CTTATAAAAGCTCACTAGATTTTGCTTCGGACCAAACATCTTCTACTTTC
TGAAGTACAGCAAACAAAATGGCCTCATCCAAAACATTCATCTTTTTGCT
GGTTGGCTTGGTATGCCGCGTGGCAGCATGGAACTCCAATATGGAAAGTA
AGAGATTTTCTGTGAAATTATCATAATCATTATGCCAATGGAAAAAGGTT
GAAAATAATTTACACCACAGGTATCTCCAGTAGCGTGGTACCCCCTAGGT
GGGCAACTCTCCCCCTCCCTCAAGCGGCAAATTTTTTGGCAGCGCCGAAT
GACAAGCCTCTAGTTACTTATTTGAGCACCCCTTTGCTCTTTCCACCTTA
GAATTAGCAATTCTAAGCCAAAAAAAAGGAAAAAAATACTTATAATTTTC
ATTCACGCTTCCCTCCCTCCTTATTTTTACAAACATATCTTATTTTCAAA
AAGAGCGCCGAAATCCCTACTTTTGAGAATTGCCTCCCCGTTTGCCCCAA
TTTTGGTCGACCCACCATGCTACTGCATATCTCCTACAATATCTTTGATC
TGTAAACATGAGATAGGGAGGTACACGAGATAGAATTTTAGTCTTAATAG
AGAGATAAATGGTGCAGAACTGTTCAGTCTGACCCTCGGTCCGACATGGG
TATTTATTTTTGTGTTTCAGAGGAAGAACTCTTTGAAGGTGATATTATCC
TGAATGATTTTCAGAAGAAAGCTTTGAGTTCACCGCTTGGTTATGGCCTC
ACATCCAAGAAGGGTTTCAATAAACATTGGCCAAAAGGAGTTCCAATTGC
GTATGAAATGTCAGCAGAGTTTGCTAGAGGTGAGTCAAAAAACCTTTACC
TGGGTTTCACCAATTATCCTTGACCCTTCTCATCAATTTTCTGAGTATCA
AGTTAATACTGTAAATATAACTCAGCTGTTACCAGTGTCAATCTCTTGTT
TTAATTGTTGTTTTTTTGTTTTATTTATTTGTCGATTACTTAAACCTAGT
ATTGGCTGCTGAGCAAAAATATCTCCTCTAAGAGAAAATTTCCAGAAAAG
ATTAAGTAATAGTTATCGCACGGTACCGATTACAATATGGGATATATTTT
TCAAGTTCAGATTTTTCGTCATATATTCGAGGAAAATATTGAAAACACTA
CAATTATACTTTTTAGATGCTTCGAAGAAAGCAAAGATTGAGGCAGCATT
CAGAGATTATGAACAAAAGACATGCTTGAGATTCGTACCGAGGACTAACC
AACAACAATTCATGCATTTCAGAAGACAAGGACAGGGGTAACACTTTTTC
TGAACAGCTTTTGATGAACAAACTAAGAAATTGTAGTCTTTGAAAAAGCA
ATAATACCTAAGAAAAAATTGCAAATTTTTGCTGTAAAAAAGTAAAAATG
TGCTACACTGTAGGGTGCGATTCTAAAAGCCATTTTTCGCCGCACATAAC
GTCAGTTGGTAAACCTGTGACTGTATTTGACTTTGAGTTAGGTATTGGTG
TACCAGCAATTGGTAAAACAAAAACAATTTAAAAAACAACTAATAAATGA
ACATTGTCTTTTCAGTTGTTATACATCAGTTGGTATGCAGTATCGTGGCA
ATTTCATCAATCTAGGGGTCGGTTGTTTCACACACGGCGTTTTGATTCAC
GAAATCATGCATGGTCTTGGGGTTTGGCACGAGCAAAGCAGAGGTGATCG
AGACCAACATATCAAGATTAATTACCATAACATGAAATGCTGTGAGTTTT
AAACTACTCAAACTAGAGTCTACTTCTGACGACCATAACTGGTCTCCGTG
TTATACAGTACACCCCTGTGTCACATACCCGCTGGGTACCCAGCCCAAAT
GGAAAATTTGCCTAAAATTTTGTCCCCGGTGGAAAAGATAACATGGAATT
TCAGCCCCACTGGAAAATTGACACTGATTTTATCCCCAGTTATAATAAGG
AAAAAACTGGACTCCCAAACCCCATTGGGATTTCAATAGAAAGTTTCATC
CTCATTGAGAAAAAATCTTTCACCGGGGTGTCCCGCTTAATATTTGTTAA
TTTGAACCTCTTTATAACTCGAATTTCTCATAAAATCGAACAAATTGCTG
GTCCCTTCTGTTAACGATGCCTTATAAACCTTACTCTATATCTCAAAATT
TCTTAACTCGAACAGATATCGGTTCTCCGTGCACCTTCGAGTTATGGAAA
TTCCATTGTACTTTGACTGACTAGAGTCTAGTGCTGATTGTCATAACTGG
CACTCGGGCTATATACTACGTGGTCAGAATGAGAGTCAAAACCACTTCTT
TTTCCATTCATGAGATAATTTTTCAGAAGAATGTAAACCATTTCTTTTCC
TGGGCTAAACAATTGGTTATCTTTCAAAATACCAAAATTGCTAACGTCAG
CAGTTTTTTATAAACATTTTTCCCATAAGGCCAAACATTTTGCTTCTTCA
ATATATTTTGCTGTATTTGGTGACATGATAAATGACGTCACACATTAGTG
AGGTGATCTCTAGCTACAACAAACTAAAATATTTTGGTATTCCACGAAGA
TTCATTCCACTATTACGAGTCCACTCCTATATAAGAAAATAACCTGATAA
CAAACACCGTTTTAATATTTCAGGTAAAAGTCAATTTACAGAGAGAGACT
ACACCATCGACAGCCTTGGGTTTCCATACGATTTGAAAAGCGTGATGCAT
TATGGACCCTGGGCTTTCTCAAACGGAAATGGCCCAACCATTGAACCCCT
GAATAAAAGGGAAAGAATTTATAACAACGGACAATTTTCAGATATTGATA
TTCAACAATTGAATGCAATGTACTGCGGTGGACCACGTAAGTACTTTCTT
TTGATACGAAAGGCCAAACTTACACTACAATCACGTCAAAACAAACAATA
AATCCTGTTATAGCCTAATGATTATAGATACCGGATTTTTGATTTAGGGG
GCCGGTAATAAGCGAATGTACCTTTTAAGTCACTTCGAAGCTGAAAGGGT
TATGAAGACCTTTCTTGAACACTTTCCATTCTGTTATGAAAAAGTTTAAA
CCATCGAAATTGACCTTGGTCTAGACGTATCACTGTACACTTCTTACAAA
GGATAAAGAACATGAGTGGCCATATCAAGGTATCTTTCTCCCTCCTAGAT
GGATCAGGCACCACAACGACCAAAGCACCGGTCACTTCTGCACCACGTGG
CAAGCTCTTTAAACAAGTCAGCAGCAACAAATGTCTTGGTCTTGATCACA
ACGATAACCTCATTTTCACCAGTCGTTGTTAAACACGCTTTGAAGCAATG
GAAGGAAAATTATTCCAGTCTAATGTACCAGGAGCTAAATGCGCCGAAGC
TTTGAGCAACAACAGTGAATCTGGGATTCGTTTCAGAGCTAATTGCGATC
AAGGCTTCAGAAAAGTTCAAAAAGGCAGATATTTTGTCCTTCAACACAAA
CAAACTGGCAAATGTATTCATCCTAACCGAGGATCATCCAACCCTTCTGA
TGGAACCAAAGCTGTTATTTACCATGATTGCAATTCTGGCTCACGTATTC
AGTTCAGAGAAGAATAGTTTGACCACTACAGTAATAATCGATGTATTAAA
TTATAGAGAAATTTTTAGGTGAAAGATAGATTGCTACCACCATAAAGTTA
AA Coding sequence (CDS) from alignment at scaffold_77:249774..253475- >TCONS_00072424 ID=TCONS_00072424|Name=TCONS_00072424|organism=Clytia hemisphaerica|type=CDS|length=5292bp|location=Sequence derived from alignment at scaffold_77:249774..253475- (Clytia hemisphaerica) ATGGATCAGGCACCACAACGACCAAAGCACCGGTCACTTCTGCACCACGT GGCAAGCTCTTTAAACAAGTCAGCAGCAACAAATGTCTTGGTCTTGATCA CAACGATAACCTCATTTTCACCAGTCGTTGTTAAGTAAAAGTCAATTTAC AGAGAGAGACTACACCATCGACAGCCTTGGGTTTCCATACGATTTGAAAA GCGTGATGCATTATGGACCCTGGGCTTTCTCAAACGGAAATGGCCCAACC ATTGAACCCCTGAATAAAAGGGAAAGAATTTATAACAACGGACAATTTTC AGATATTGATATTCAACAATTGAATGCAATGTACTGCGGTGGACCACTTG TTATACATCAGTTGGTATGCAGTATCGTGGCAATTTCATCAATCTAGGGG TCGGTTGTTTCACACACGGCGTTTTGATTCACGAAATCATGCATGGTCTT GGGGTTTGGCACGAGCAAAGCAGAGGTGATCGAGACCAACATATCAAGAT TAATTACCATAACATGAAATGCTATGCTTCGAAGAAAGCAAAGATTGAGG CAGCATTCAGAGATTATGAACAAAAGACATGCTTGAGATTCGTACCGAGG ACTAACCAACAACAATTCATGCATTTCAGAAGACAAGGACAGGGAGGAAG AACTCTTTGAAGGTGATATTATCCTGAATGATTTTCAGAAGAAAGCTTTG AGTTCACCGCTTGGTTATGGCCTCACATCCAAGAAGGGTTTCAATAAACA TTGGCCAAAAGGAGTTCCAATTGCGTATGAAATGTCAGCAGAGTTTGCTA GAGATGGCCTCATCCAAAACATTCATCTTTTTGCTGGTTGGCTTGGTATG CCGCGTGGCAGCATGGAACTCCAATATGGAAAATGGATCAGGCACCACAA CGACCAAAGCACCGGTCACTTCTGCACCACGTGGCAAGCTCTTTAAACAA GTCAGCAGCAACAAATGTCTTGGTCTTGATCACAACGATAACCTCATTTT CACCAGTCGTTGTTAAGTAAAAGTCAATTTACAGAGAGAGACTACACCAT CGACAGCCTTGGGTTTCCATACGATTTGAAAAGCGTGATGCATTATGGAC CCTGGGCTTTCTCAAACGGAAATGGCCCAACCATTGAACCCCTGAATAAA AGGGAAAGAATTTATAACAACGGACAATTTTCAGATATTGATATTCAACA ATTGAATGCAATGTACTGCGGTGGACCACTTGTTATACATCAGTTGGTAT GCAGTATCGTGGCAATTTCATCAATCTAGGGGTCGGTTGTTTCACACACG GCGTTTTGATTCACGAAATCATGCATGGTCTTGGGGTTTGGCACGAGCAA AGCAGAGGTGATCGAGACCAACATATCAAGATTAATTACCATAACATGAA ATGCTATGCTTCGAAGAAAGCAAAGATTGAGGCAGCATTCAGAGATTATG AACAAAAGACATGCTTGAGATTCGTACCGAGGACTAACCAACAACAATTC ATGCATTTCAGAAGACAAGGACAGGGAGGAAGAACTCTTTGAAGGTGATA TTATCCTGAATGATTTTCAGAAGAAAGCTTTGAGTTCACCGCTTGGTTAT GGCCTCACATCCAAGAAGGGTTTCAATAAACATTGGCCAAAAGGAGTTCC AATTGCGTATGAAATGTCAGCAGAGTTTGCTAGAGATGGCCTCATCCAAA ACATTCATCTTTTTGCTGGTTGGCTTGGTATGCCGCGTGGCAGCATGGAA CTCCAATATGGAAAATGGATCAGGCACCACAACGACCAAAGCACCGGTCA CTTCTGCACCACGTGGCAAGCTCTTTAAACAAGTCAGCAGCAACAAATGT CTTGGTCTTGATCACAACGATAACCTCATTTTCACCAGTCGTTGTTAAGT AAAAGTCAATTTACAGAGAGAGACTACACCATCGACAGCCTTGGGTTTCC ATACGATTTGAAAAGCGTGATGCATTATGGACCCTGGGCTTTCTCAAACG GAAATGGCCCAACCATTGAACCCCTGAATAAAAGGGAAAGAATTTATAAC AACGGACAATTTTCAGATATTGATATTCAACAATTGAATGCAATGTACTG CGGTGGACCACTTGTTATACATCAGTTGGTATGCAGTATCGTGGCAATTT CATCAATCTAGGGGTCGGTTGTTTCACACACGGCGTTTTGATTCACGAAA TCATGCATGGTCTTGGGGTTTGGCACGAGCAAAGCAGAGGTGATCGAGAC CAACATATCAAGATTAATTACCATAACATGAAATGCTATGCTTCGAAGAA AGCAAAGATTGAGGCAGCATTCAGAGATTATGAACAAAAGACATGCTTGA GATTCGTACCGAGGACTAACCAACAACAATTCATGCATTTCAGAAGACAA GGACAGGGAGGAAGAACTCTTTGAAGGTGATATTATCCTGAATGATTTTC AGAAGAAAGCTTTGAGTTCACCGCTTGGTTATGGCCTCACATCCAAGAAG GGTTTCAATAAACATTGGCCAAAAGGAGTTCCAATTGCGTATGAAATGTC AGCAGAGTTTGCTAGAGATGGCCTCATCCAAAACATTCATCTTTTTGCTG GTTGGCTTGGTATGCCGCGTGGCAGCATGGAACTCCAATATGGAAAATGG ATCAGGCACCACAACGACCAAAGCACCGGTCACTTCTGCACCACGTGGCA AGCTCTTTAAACAAGTCAGCAGCAACAAATGTCTTGGTCTTGATCACAAC GATAACCTCATTTTCACCAGTCGTTGTTAAGTAAAAGTCAATTTACAGAG AGAGACTACACCATCGACAGCCTTGGGTTTCCATACGATTTGAAAAGCGT GATGCATTATGGACCCTGGGCTTTCTCAAACGGAAATGGCCCAACCATTG AACCCCTGAATAAAAGGGAAAGAATTTATAACAACGGACAATTTTCAGAT ATTGATATTCAACAATTGAATGCAATGTACTGCGGTGGACCACTTGTTAT ACATCAGTTGGTATGCAGTATCGTGGCAATTTCATCAATCTAGGGGTCGG TTGTTTCACACACGGCGTTTTGATTCACGAAATCATGCATGGTCTTGGGG TTTGGCACGAGCAAAGCAGAGGTGATCGAGACCAACATATCAAGATTAAT TACCATAACATGAAATGCTATGCTTCGAAGAAAGCAAAGATTGAGGCAGC ATTCAGAGATTATGAACAAAAGACATGCTTGAGATTCGTACCGAGGACTA ACCAACAACAATTCATGCATTTCAGAAGACAAGGACAGGGAGGAAGAACT CTTTGAAGGTGATATTATCCTGAATGATTTTCAGAAGAAAGCTTTGAGTT CACCGCTTGGTTATGGCCTCACATCCAAGAAGGGTTTCAATAAACATTGG CCAAAAGGAGTTCCAATTGCGTATGAAATGTCAGCAGAGTTTGCTAGAGA TGGCCTCATCCAAAACATTCATCTTTTTGCTGGTTGGCTTGGTATGCCGC GTGGCAGCATGGAACTCCAATATGGAAAATGGATCAGGCACCACAACGAC CAAAGCACCGGTCACTTCTGCACCACGTGGCAAGCTCTTTAAACAAGTCA GCAGCAACAAATGTCTTGGTCTTGATCACAACGATAACCTCATTTTCACC AGTCGTTGTTAAGTAAAAGTCAATTTACAGAGAGAGACTACACCATCGAC AGCCTTGGGTTTCCATACGATTTGAAAAGCGTGATGCATTATGGACCCTG GGCTTTCTCAAACGGAAATGGCCCAACCATTGAACCCCTGAATAAAAGGG AAAGAATTTATAACAACGGACAATTTTCAGATATTGATATTCAACAATTG AATGCAATGTACTGCGGTGGACCACTTGTTATACATCAGTTGGTATGCAG TATCGTGGCAATTTCATCAATCTAGGGGTCGGTTGTTTCACACACGGCGT TTTGATTCACGAAATCATGCATGGTCTTGGGGTTTGGCACGAGCAAAGCA GAGGTGATCGAGACCAACATATCAAGATTAATTACCATAACATGAAATGC TATGCTTCGAAGAAAGCAAAGATTGAGGCAGCATTCAGAGATTATGAACA AAAGACATGCTTGAGATTCGTACCGAGGACTAACCAACAACAATTCATGC ATTTCAGAAGACAAGGACAGGGAGGAAGAACTCTTTGAAGGTGATATTAT CCTGAATGATTTTCAGAAGAAAGCTTTGAGTTCACCGCTTGGTTATGGCC TCACATCCAAGAAGGGTTTCAATAAACATTGGCCAAAAGGAGTTCCAATT GCGTATGAAATGTCAGCAGAGTTTGCTAGAGATGGCCTCATCCAAAACAT TCATCTTTTTGCTGGTTGGCTTGGTATGCCGCGTGGCAGCATGGAACTCC AATATGGAAAATGGATCAGGCACCACAACGACCAAAGCACCGGTCACTTC TGCACCACGTGGCAAGCTCTTTAAACAAGTCAGCAGCAACAAATGTCTTG GTCTTGATCACAACGATAACCTCATTTTCACCAGTCGTTGTTAAGTAAAA GTCAATTTACAGAGAGAGACTACACCATCGACAGCCTTGGGTTTCCATAC GATTTGAAAAGCGTGATGCATTATGGACCCTGGGCTTTCTCAAACGGAAA TGGCCCAACCATTGAACCCCTGAATAAAAGGGAAAGAATTTATAACAACG GACAATTTTCAGATATTGATATTCAACAATTGAATGCAATGTACTGCGGT GGACCACTTGTTATACATCAGTTGGTATGCAGTATCGTGGCAATTTCATC AATCTAGGGGTCGGTTGTTTCACACACGGCGTTTTGATTCACGAAATCAT GCATGGTCTTGGGGTTTGGCACGAGCAAAGCAGAGGTGATCGAGACCAAC ATATCAAGATTAATTACCATAACATGAAATGCTATGCTTCGAAGAAAGCA AAGATTGAGGCAGCATTCAGAGATTATGAACAAAAGACATGCTTGAGATT CGTACCGAGGACTAACCAACAACAATTCATGCATTTCAGAAGACAAGGAC AGGGAGGAAGAACTCTTTGAAGGTGATATTATCCTGAATGATTTTCAGAA GAAAGCTTTGAGTTCACCGCTTGGTTATGGCCTCACATCCAAGAAGGGTT TCAATAAACATTGGCCAAAAGGAGTTCCAATTGCGTATGAAATGTCAGCA GAGTTTGCTAGAGATGGCCTCATCCAAAACATTCATCTTTTTGCTGGTTG GCTTGGTATGCCGCGTGGCAGCATGGAACTCCAATATGGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00072424-exon-scaffold_77-1575043694:253279..253475 | TCONS_00072424-exon-scaffold_77-1575043694:253279..253475 | Clytia hemisphaerica | exon |
TCONS_00072424-exon-scaffold_77-1575043694:252597..252755 | TCONS_00072424-exon-scaffold_77-1575043694:252597..252755 | Clytia hemisphaerica | exon |
TCONS_00072424-exon-scaffold_77-1575043694:252139..252259 | TCONS_00072424-exon-scaffold_77-1575043694:252139..252259 | Clytia hemisphaerica | exon |
TCONS_00072424-exon-scaffold_77-1575043694:251685..251860 | TCONS_00072424-exon-scaffold_77-1575043694:251685..251860 | Clytia hemisphaerica | exon |
TCONS_00072424-exon-scaffold_77-1575043694:250590..250802 | TCONS_00072424-exon-scaffold_77-1575043694:250590..250802 | Clytia hemisphaerica | exon |
TCONS_00072424-exon-scaffold_77-1575043694:249774..250277 | TCONS_00072424-exon-scaffold_77-1575043694:249774..250277 | Clytia hemisphaerica | exon |
TCONS_00072424-exon-scaffold_77-1510915933:253279..253475 | TCONS_00072424-exon-scaffold_77-1510915933:253279..253475 | Clytia hemisphaerica | exon |
TCONS_00072424-exon-scaffold_77-1510915933:252597..252755 | TCONS_00072424-exon-scaffold_77-1510915933:252597..252755 | Clytia hemisphaerica | exon |
TCONS_00072424-exon-scaffold_77-1510915933:252139..252259 | TCONS_00072424-exon-scaffold_77-1510915933:252139..252259 | Clytia hemisphaerica | exon |
TCONS_00072424-exon-scaffold_77-1510915933:251685..251860 | TCONS_00072424-exon-scaffold_77-1510915933:251685..251860 | Clytia hemisphaerica | exon |
TCONS_00072424-exon-scaffold_77-1510915933:250590..250802 | TCONS_00072424-exon-scaffold_77-1510915933:250590..250802 | Clytia hemisphaerica | exon |
TCONS_00072424-exon-scaffold_77-1510915933:249774..250277 | TCONS_00072424-exon-scaffold_77-1510915933:249774..250277 | Clytia hemisphaerica | exon |
TCONS_00072424-exon-scaffold_77-1491911889:253279..253475 | TCONS_00072424-exon-scaffold_77-1491911889:253279..253475 | Clytia hemisphaerica | exon |
TCONS_00072424-exon-scaffold_77-1491911889:252597..252755 | TCONS_00072424-exon-scaffold_77-1491911889:252597..252755 | Clytia hemisphaerica | exon |
TCONS_00072424-exon-scaffold_77-1491911889:252139..252259 | TCONS_00072424-exon-scaffold_77-1491911889:252139..252259 | Clytia hemisphaerica | exon |
TCONS_00072424-exon-scaffold_77-1491911889:251685..251860 | TCONS_00072424-exon-scaffold_77-1491911889:251685..251860 | Clytia hemisphaerica | exon |
TCONS_00072424-exon-scaffold_77-1491911889:250590..250802 | TCONS_00072424-exon-scaffold_77-1491911889:250590..250802 | Clytia hemisphaerica | exon |
TCONS_00072424-exon-scaffold_77-1491911889:249774..250277 | TCONS_00072424-exon-scaffold_77-1491911889:249774..250277 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_77 | supercontig | scaffold_77:249774..253475 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
Term | Definition |
GO:0004222 | metalloendopeptidase activity |
GO:0008237 | metallopeptidase activity |
GO:0008270 | zinc ion binding |
Vocabulary: Biological Process
Term | Definition |
GO:0006508 | proteolysis |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
biological_process |
GO:0006508 |
proteolysis |
molecular_function |
GO:0004222 |
metalloendopeptidase activity |
molecular_function |
GO:0008237 |
metallopeptidase activity |
molecular_function |
GO:0008270 |
zinc ion binding |
Blast
BLAST of TCONS_00072424 vs. Swiss-Prot (Human)
Match: MEP1B (Meprin A subunit beta OS=Homo sapiens GN=MEP1B PE=1 SV=3) HSP 1 Score: 121.324 bits (303), Expect = 2.328e-29 Identity = 88/276 (31.88%), Postives = 120/276 (43.48%), Query Frame = 2
Query: 203 ELFEGDIILNDFQKKALSSPLGYGLTSKKGFNKHWPKGVPIAYEMSAEFARDASKKAKIEAAFRDYEQKTCLRFVPRTNQQQFMHFRRQGQGCYTSVGMQYRG-NFINLGVGCFTHGVLIHEIMHGLGVWHEQSRGDRDQHIKINYHNMKCCKSQ--FTERDYTIDSLGFPYDLKSVMHYGPWAFSNGNGPTI--EPLNKRERIYNNGQFSDIDIQQLNAMY-------------------CGGPHGSGTTTTKAPVTSAPRGKLFKQVSSNKCLG 958
+LFEGDI L+ Q + S G WP +P E S E + K I AF Y KTC+ F P + ++ + G GC++SVG + G +++G C + HE +H LG WHEQSR DRD +++I + + + T D DSL PYD SVMHY AF NG PTI + + I FSD D+ +LN +Y CG SG V+ PRG + +C G
Sbjct: 47 DLFEGDIRLDRAQIR----------NSIIGEKYRWPHTIPYVLEDSLEM----NAKGVILNAFERYRLKTCIDFKPWAGETNYISVFK-GSGCWSSVGNRRVGKQELSIGANCDRIATVQHEFLHALGFWHEQSRSDRDDYVRIMWDRILSGREHNFNTYSDDISDSLNVPYDYTSVMHYSKTAFQNGTEPTIVTRISDFEDVIGQRMDFSDSDLLKLNQLYNCSSSLSFMDSCSFELENVCGMIQSSGDNADWQRVSQVPRGPESDHSNMGQCQG 307
The following BLAST results are available for this feature:
|