TCONS_00072412 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072412
Unique NameTCONS_00072412
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1471

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072412 ID=TCONS_00072412|Name=TCONS_00072412|organism=Clytia hemisphaerica|type=transcript|length=1471bp
tctggCACACTCGGTATATACAAAAAAATTGTCAGAAactatcttttatt
ttaaatttagtCTAAATTTTGCGTCATTTCAAGCGAGTCCAAGATATTTA
CTGAGACATTTCGGTAGATTGTCCTTCAAGAATTCGTCATGAAAACTTTT
CAAGCAAGCCATTCGTGCCATATGTTTCAAAGACATCTTTAAATGATCAA
AAGGAGAATTCACTTTTACGAAGCGAAGATAAGGGCTTGATAAATACATC
AAACTTGCTGTTGGGTCAAATAGCGCTATTTCCGCCATATGCCAATTAAT
TGAAAAACCGTAAATTTCTTTTCTACAATCGTACCGGATTATCAGTTCTC
CTGATTTGAAGTCGTACAAACAAACCGAATGAAATGGTTGGGAGCCTGCT
TCTGAAGTGACTTGAAGGCCTTCGACAAAAAACTGATCAAAACATCCAAC
GACTTTGTGTAAAATAATATCGTTCCGTCCATGACACAAATTAATTCTTT
TCAATGGGATGACCTCATTTTTATTGTCGACTTGAAAGACCTTTATGCTT
TTTGCCTTTGTGTCAACGTTCTCCAAGAAAATATAGAAGATTGAGTTTGA
CAAatgataaaaatcattaaaattctGAACACCTTCCCTTTCAGAGATTG
TGACTTCATAATCCATAAGGCGATTTCCCTCAAAATCAAAACCATATATC
ATACCATATTCATAATTATGAAGGTAAATTCTCTTAGAATTCATATCTAG
CGATACACCAGAATTATGGAACGCAAACGTTCCGAGTTCGAAGTCCATTT
CAGTGCAACTGCTCAACACAACACGTTGGAGATGTGAAAGTCTTTTTTCG
CCTATTAAAACGATGTCAGCCACAAAATTGTAACCACCAGGAGAAACAAG
CACCATTAAGACGTAACCATATTCTTTGGTTTTCTCCTGCCAAACACTAT
GGATGTAATCAAAAGCTTTATATGATTCCAGTTCAATGACAGAATCCTCC
GTTTCTTGAAAAGTGGTCGATACAATACTTCCTGGAAGAGCACCTAAAAG
GTGTTTCAAGCTTCCACTGTGTAATATTAAAGGCTGGCTCCCATCTTCCA
AAGTCGAAGGCTTCTCAAACACAAACCAACGATTAAACAAAGGATCATAC
GGCAAGTCATATTCATTATAGCGCAAGTCCCATGATGGTAATTGAATTAA
ACTCACTTGTAGTTTATCTGTTTCCTCATTGAATGAATAGACGCTTATGA
TATCGTCACCTGTTTTATCCTCAGCTCCGCAATATACGGTGTAATATTTC
CCAGAGCTGTCGAAGCCACGTATACTTATTTGCTGGGGGCGGTCAAGACC
AGCCCAGATTTCTTTTGTCTCAACACATTCGGTGAGATGAGGTGGTAAGA
ACGATTGACGTGGGTAAGCCaacatttcttttttgaaaatactctgaaca
ttatttcataattattatcac
Run BLAST on NCBI

transcript from alignment at scaffold_77:188672..190142-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072412 ID=TCONS_00072412|Name=TCONS_00072412|organism=Clytia hemisphaerica|type=transcript|length=1471bp|location=Sequence derived from alignment at scaffold_77:188672..190142- (Clytia hemisphaerica)
TCTGGCACACTCGGTATATACAAAAAAATTGTCAGAAACTATCTTTTATT TTAAATTTAGTCTAAATTTTGCGTCATTTCAAGCGAGTCCAAGATATTTA CTGAGACATTTCGGTAGATTGTCCTTCAAGAATTCGTCATGAAAACTTTT CAAGCAAGCCATTCGTGCCATATGTTTCAAAGACATCTTTAAATGATCAA AAGGAGAATTCACTTTTACGAAGCGAAGATAAGGGCTTGATAAATACATC AAACTTGCTGTTGGGTCAAATAGCGCTATTTCCGCCATATGCCAATTAAT TGAAAAACCGTAAATTTCTTTTCTACAATCGTACCGGATTATCAGTTCTC CTGATTTGAAGTCGTACAAACAAACCGAATGAAATGGTTGGGAGCCTGCT TCTGAAGTGACTTGAAGGCCTTCGACAAAAAACTGATCAAAACATCCAAC GACTTTGTGTAAAATAATATCGTTCCGTCCATGACACAAATTAATTCTTT TCAATGGGATGACCTCATTTTTATTGTCGACTTGAAAGACCTTTATGCTT TTTGCCTTTGTGTCAACGTTCTCCAAGAAAATATAGAAGATTGAGTTTGA CAAATGATAAAAATCATTAAAATTCTGAACACCTTCCCTTTCAGAGATTG TGACTTCATAATCCATAAGGCGATTTCCCTCAAAATCAAAACCATATATC ATACCATATTCATAATTATGAAGGTAAATTCTCTTAGAATTCATATCTAG CGATACACCAGAATTATGGAACGCAAACGTTCCGAGTTCGAAGTCCATTT CAGTGCAACTGCTCAACACAACACGTTGGAGATGTGAAAGTCTTTTTTCG CCTATTAAAACGATGTCAGCCACAAAATTGTAACCACCAGGAGAAACAAG CACCATTAAGACGTAACCATATTCTTTGGTTTTCTCCTGCCAAACACTAT GGATGTAATCAAAAGCTTTATATGATTCCAGTTCAATGACAGAATCCTCC GTTTCTTGAAAAGTGGTCGATACAATACTTCCTGGAAGAGCACCTAAAAG GTGTTTCAAGCTTCCACTGTGTAATATTAAAGGCTGGCTCCCATCTTCCA AAGTCGAAGGCTTCTCAAACACAAACCAACGATTAAACAAAGGATCATAC GGCAAGTCATATTCATTATAGCGCAAGTCCCATGATGGTAATTGAATTAA ACTCACTTGTAGTTTATCTGTTTCCTCATTGAATGAATAGACGCTTATGA TATCGTCACCTGTTTTATCCTCAGCTCCGCAATATACGGTGTAATATTTC CCAGAGCTGTCGAAGCCACGTATACTTATTTGCTGGGGGCGGTCAAGACC AGCCCAGATTTCTTTTGTCTCAACACATTCGGTGAGATGAGGTGGTAAGA ACGATTGACGTGGGTAAGCCAACATTTCTTTTTTGAAAATACTCTGAACA TTATTTCATAATTATTATCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044954XLOC_044954Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072412-exon-scaffold_77-1575043694:188672..190142TCONS_00072412-exon-scaffold_77-1575043694:188672..190142Clytia hemisphaericaexon
TCONS_00072412-exon-scaffold_77-1510915933:188672..190142TCONS_00072412-exon-scaffold_77-1510915933:188672..190142Clytia hemisphaericaexon
TCONS_00072412-exon-scaffold_77-1491911889:188672..190142TCONS_00072412-exon-scaffold_77-1491911889:188672..190142Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_77supercontigscaffold_77:188672..190142 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.98569 2.62314 1.40755 0.491869 4.43425 2.8153 2.93275 3.48361 1.52585 1.79462 2.42199 1.08222 1.39781 1.28182 2.10319 2.30178 2.75527 2.96966 1.18541 0.361712 1.36072 1.37184 2.30986 3.09605 2.32649 2.80372 0.566321 0.580275 1.42736 1.60819
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072412 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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