|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072409 ID=TCONS_00072409|Name=TCONS_00072409|organism=Clytia hemisphaerica|type=transcript|length=2431bpRun BLAST on NCBI transcript from alignment at scaffold_77:98030..139297- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00072409 ID=TCONS_00072409|Name=TCONS_00072409|organism=Clytia hemisphaerica|type=transcript|length=41268bp|location=Sequence derived from alignment at scaffold_77:98030..139297- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00072409 vs. Swiss-Prot (Human)
Match: ENO4 (Enolase 4 OS=Homo sapiens GN=ENO4 PE=2 SV=2) HSP 1 Score: 89.7373 bits (221), Expect = 1.827e-18 Identity = 84/340 (24.71%), Postives = 158/340 (46.47%), Query Frame = 2
Query: 875 LMGDPLYEQ--FLSSTKKENLTIPMP--AITFFSCCQVTPGKVNMVRELMVLFKPNADFKEGVEQVIKLYHAFEKAL----------QAKYGATGIIKDSR---------GVLTPTFDKVEQIFEVLTQTCRAEFEEREFKDLFDIILDVGANEFFDPEKKKYELCIGSMKSTDEVVALYQTWIEQF-SIVAFVDPFSTLDPSK-KTVYDSLATQCYIISSQVSGFEQCHLEMDERTI---DGMLLQPEVHSSTVSETVENLLPLHEKDGILMMNDEWGLVQHSTASVDLSIVFGATFIRVTTPCGVGSNSLQY--MLDIKESLPVDDE-SFDDERSYIF 1801
L+ PLY L +++ T+ MP ++ SC + + GK+N+++E++ + P K+GVE ++++ K + + K G G + + G LT D +EQ ++ + C A E + ++ +E D K KYE+ +G+ K+ E+V LY I ++ SI+A +DPF D + ++Y +L ++CYII+ S LE +I +G++++ + +T+S+ VE + K I + G + VDL++ G FI++ G +Y +L I+E L + F +E ++ +
Sbjct: 253 LLNKPLYLNIALLKHNQEQPTTLSMPLLMVSLVSCGKSSSGKLNLMKEVICIPHPELTTKQGVEMLMEMQKHINKIIEMMPPSPPKAETKKGHDGSKRGQQQITGKMSHLGCLTINCDSIEQPLLLIQEIC-ANL-GLELGTNLHLAINCAGHELMDYNKGKYEVIMGTYKNAAEMVDLYVDLINKYPSIIALIDPFRKEDSEQWDSIYHALGSRCYIIAGTASKSISKLLEQGNISIPKSNGLIIK-HTNQTTMSDLVEITNLIDSKKHITVFGSTEGESSDDSL-VDLAVGLGVRFIKLGG-LSRGERVTKYNRLLTIEEELVQNGTLGFKEEHTFFY 587 The following BLAST results are available for this feature:
BLAST of TCONS_00072409 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.