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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072396 ID=TCONS_00072396|Name=TCONS_00072396|organism=Clytia hemisphaerica|type=transcript|length=2490bp
CTTTCTGGAAGGGGAGGTCATCGTTTAAAAGCAAGAGATAGTTCAAGttg
GACATTGATAAGCAAAAATGCCAGCCATTTCAAATAACTTACGAAACTAC
ATAGAGCTGGTGGAAGAACGGAATATATCATACAGGAAATCAGCCATCTT
TTGGGATCAGGTACACAAATATGCCAATATCTCACTAATCATTTTGACCT
CTGTTGCGACTGTCTTATCTGTAATGGAAAGTTCGATTCCAGTGTATGTT
GTTCCGATAATTACTGGAATTGCGACGATGATTTCAAGCATGATCGGTGT
CTTTAAACCATACGAAAAACNTACTGGGATTGCGACGATGATTTCAAGCA
TGATCGGTGTCCTTAAACCATACGAAAAACGAAATGAACAAATGGCTTCT
TCAAGGAAATTTAAGAAACTGATGTTAAATTTAATTTCAGCTGAAAGTAT
TGATGATTATAAGAAAGTGAGATCTGAAATCCAAGATGCAATGTTGGATG
AACCTTTTACGAGCTCtgttaaaaaattgaagaaacagCGAGCCGCTGAG
AAAAAGGATGCAATTGGTGTGAAATCTACAGATTGTAAAATACAGATCGG
GGGCCAAGACGAAAACGAAGTTTTCCAAAAGACCAACGCactgaaaaata
taaagaaaaatcaaaagaaaacagatAGACTACAATTATGGGCTTTAAGT
ACTAATCTGAAAATGGAAGTGTACAAGGATGAGCagaaatggttgaaatt
taaaaaagaagaaggaatCACGCGTACTTTTGATGATAGTGAAAGTGTAA
ATGATAGCTGTGAGAATAAAGTGCTGAAAAACAGTGACGGTCGAGCTATG
GATCAGATTGATTCTGAAAGCACCACCAAATTATCGGAGGAAGGAATGGA
TTTGGCTATAGACTTAGACAGACCATTTGAATCACGTAGATCATTTGACC
ATACAGATGGTGGTAGCATTAAACCAATGCAGAAGTCAACACCAACAAAG
CTTCAAGATGTGCCAGAGGACAAGAATCCCTTATTGATGAATACTACAAC
AGATATGAATCATATCAAGCCTGATCATGATTTTATGGCAATTCGAGTGC
AACCATCTGGTAAATCAAACATAGAATCTAGCTCGAAGTGTTTAAATATA
CCACAGAATCCTGATGTAACTTTGGTGCCACTTACTTCGGAGAAACACCT
TATTGGCGACCACGAAGACCATAGTCAATTATCCCGACAGAACGCAGTAA
TCAGTGATCATTTGAATAACAACGATAACGAAGAATCACTCAAAAACAAC
TGACGGactatttttttaaaacttaattTGTATAGGTTCAAAATGTgcta
ttccattttatatccatacaggagGGTGGACGAGCATTTTCAGAGGGTAA
accgagaagaatttccaggggtctaaggaaagttatttttaaagaaagtt
attctaaaaattCCAGTGGGTAAATGACTAATTTTAGTTCGTCAACCTAA
GGTattaagaaaaagattttcaagacTTTTAGCAAATTTTGCCATCTTCC
AGGGGGCATCATTACATGCATtgtacattttgaaaaactttttttggctt
aaaaagaCTCGTctacccccctgtatggaaattaaatggaacagcccaat
taGAAAGAGGCAACATGTTATAATACAACTTTATTTGGGAACTAGACGAT
GTTAAAGGACGTTTTTTGACGATTGTACCAGCTGAAGTGTATGGAAGAAA
ACACAAAGGACCAGAGCTTTGATGAACAATTTATGCTCGTTAAGCTCGAT
AACTTTTACATGAACACATATTCATTTACTTATatagaagaaaattttat
tccTACTGAAGAAATCTTGTCcggacgatctcaatcgaacgcaatcgaat
ctcaatcgaatattactgcaattttcagattcgattgatattcgattgag
ttcgaatgatgttcgattgcgttcgattgcgttcgatcgtcgcttcattg
acccccggattgttcatcgcataatttctacgggaaattgaaagtaattt
cattcggcttgtgatatTTGAGAGCTTAGATGtcgggaagctgcaagaat
aaagccagacgatctcaatcgaacggaatcgacgatcgaaacagtcgaac
aacaatcgaaccaatcgaatattacccagaattttgacgttcgattgaga
ttcgattgcgttcgacaatcgaatttcaatcggtcgattgcgttggattg
atgttcgattgcgttcgacaatcgaatttcaatcggtcgattgcgttcga
tttggttcgactggttcgatcgtcgattccgttcgattgagatcgtcttg
TTTTGTTGACAAATAGTCTGTATGTAAAGGACcaaaattaaatcaatttg
TAATTACATTTCAGGGTGTGTTTTTCACTCCTTTACTTGATAATTACACC
TCTGTCTCAATGCCCTGATGGAACTTTTGTGCAACACCCG Run BLAST on NCBI protein sequence of TCONS_00072396-protein >TCONS_00072396-protein ID=TCONS_00072396-protein|Name=TCONS_00072396-protein|organism=Clytia hemisphaerica|type=polypeptide|length=411bp
MPAISNNLRNYIELVEERNISYRKSAIFWDQVHKYANISLIILTSVATVL
SVMESSIPVYVVPIITGIATMISSMIGVFKPYEKXTGIATMISSMIGVLK
PYEKRNEQMASSRKFKKLMLNLISAESIDDYKKVRSEIQDAMLDEPFTSS
VKKLKKQRAAEKKDAIGVKSTDCKIQIGGQDENEVFQKTNALKNIKKNQK
KTDRLQLWALSTNLKMEVYKDEQKWLKFKKEEGITRTFDDSESVNDSCEN
KVLKNSDGRAMDQIDSESTTKLSEEGMDLAIDLDRPFESRRSFDHTDGGS
IKPMQKSTPTKLQDVPEDKNPLLMNTTTDMNHIKPDHDFMAIRVQPSGKS
NIESSSKCLNIPQNPDVTLVPLTSEKHLIGDHEDHSQLSRQNAVISDHLN
NNDNEESLKNN Run BLAST on NCBI transcript from alignment at scaffold_77:43277..47688- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072396 ID=TCONS_00072396|Name=TCONS_00072396|organism=Clytia hemisphaerica|type=transcript|length=4412bp|location=Sequence derived from alignment at scaffold_77:43277..47688- (Clytia hemisphaerica)
CTTTCTGGAAGGGGAGGTCATCGTTTAAAAGCAAGAGATAGTTCAAGGTA
AGTCTAAAGTTCGAAAGTGACTTGTTTTTTTTGGGACTTGTTTCTAATTT
AGAATTTTCGCTGCCGAGTCTACTTTTAACCTACTACAATAATGGAGTCT
CCTTACTTCGAATAAGATTTTTGGTTCTATCATCAGTTACTTTAAAAACA
GCTCCATAACTCGAAACTCAACTTTAACTATAAATCTCTTTAATATAAGT
TTGAATATCATAAAACTTTATTTTTAGGTTTAGTAGGTTTCAGCAGTAGC
GTAGACAGGAGGGGTACAAAATAATTATCTTTTCATAATATAAAAAGATA
ATTACTGTGTCATAAATCTACATATCTACATATCTACTCCTACACAAATT
TTGCATCCCTCTTGTCTACGCTACTGGTTTTAGCTCTTTCAACCATGATC
TTTCTCCTTCTAAATGAGATTTTAATCCTTTAGAATTAACTTCACAGATA
AATCGTCAAAAATAGGGCGGAAAGGATCGCGGCGATCTTTTGTACATACA
TACTGGTATAGGACCGAAAAAAAATTAGAGATCTCACTTAATGGGTTAAA
TACCCTAGCCAATATTCTTGAAGCCTATGTAATCTTTTCTAAAGAGATTT
TATCGTTATTCAGCGGCCAGTATAGGTGAAAAACCCAATCATAAGCGGTT
TAAATAAGGACTAGAGCGTAAATGTGACCAGGATTAACCGAGAGCTGGCG
TAAAAAGGGTACGTTAAGCTAGGTGGAAATTTTCAGTTGTATTGAAGTTT
TTATAAGATGCTCACATAATTGGTTATTCAAAACAATAGAGATGACGCGT
TCTTTAGAAAAATATAATAAAAGTTTTTGTTTGAATAGTTAACGACCAAT
CCAATGACAAAAGTTCTTGTAAATGTTCAACTTGACCCGAAATTTTAATC
CCCTGCTTACTATTACTACCTATAGTTTTTATGGAATGAAACTTATGCGA
CATTAGACTATGCTATAGTCTAAGACGAGTTTTATCTAAAAGGAACAAAC
GTGAAAACGAGAGTTATTTCGGGGTAGCTGTTGTCTTAAAGACACAGATT
CTATTTTCCGCCACGCAACATATTATGTTTTATAATATACAAACTATGTT
ATATCATAATAATATATTATCTGGACGGATAGCATCGTCTAATGCGAGTG
TGTTTACTCGAGTATTTACTTTGTTTATGTATAAGACGGCTACACGTTTT
TTTATATAAGAACATCCAAAATTTTTGAAGCCTTCGGATGTTTTTAGCCT
TTAGAGTTTTAAGCCTAAAAATATTCTTAAAATGTTCTTATTTTCGGCTT
TTTTGAGTACTTTTGTCCATTTTCTAAGAAATTAGGTGTTTTAGCGTCCA
CCAAGTCTTAAAATGTTCTTAACTTGTTCTTAATATTTTATTGGCCAGTG
AAGCCTTATGTTCTTATTAAAAAACGTGTAGTGCCCTATATTTTCCTACA
AACTTACGATTATGACATCTAATTTTCTAAATACACTCACAATAGTGTAT
TTTACATTTTGTAATATTTTGTTTTGCTTTAAGGATATGGGGTTTACCTC
ATCCCGGGGAGAGGGCACTCGATTTAAAAACAACCGAGCGTGCGGCCTAA
AATTAGGCCTTTAATATCGGACCCTTGCACTGCAGAGAAAATTTTGCCCA
ATTTGAGTGAGTTTGGGCGAGAAATGGACCCTTACGGTGCATCTTCTTGA
AAGTCTTTGACTATTCAAGGGCAAAATATGATCAGATTTTTCAAACTTTA
CATCCTTACAGTGCAATTTTTTCTTTTCCTTGCTCATTTCGACCCTTAGA
GCACTTTGAAAAGCTTGGAAAAAGAACCCTTAAGGGCCGCACATACGGTA
GATCGTTTACCTTGAATGCCACCATCCCCGGGGGACTTTATAACCGATGG
ATTTTGTTTTTTCTTTTAGTTGGACATTGATAAGCAAAAATGCCAGCCAT
TTCAAATAACTTACGAAACTACATAGAGCTGGTGGAAGAACGGAATATAT
CATACAGGAAATCAGCCATCTTTTGGGATCAGGTACACAAATATGCCAAT
ATCTCACTAATCATTTTGACCTCTGTTGCGACTGTCTTATCTGTAATGGA
AAGTTCGATTCCAGTGTATGTTGTTCCGATAATTACTGGAATTGCGACGA
TGATTTCAAGCATGATCGGTGTCTTTAAACCATACGAAAAACNTACTGGG
ATTGCGACGATGATTTCAAGCATGATCGGTGTCCTTAAACCATACGAAAA
ACGAAATGAACAAATGGCTTCTTCAAGGAAATTTAAGAAACTGATGTTAA
ATTTAATTTCAGCTGAAAGTATTGATGATTATAAGAAAGTGAGATCTGAA
ATCCAAGATGCAATGTTGGATGAACCTTTTACGAGCTCTGTTAAAAAATT
GAAGAAACAGCGAGCCGCTGAGAAAAAGGATGCAATTGGTGTGAAATCTA
CAGATTGTAAAATACAGATCGGGGGCCAAGACGAAAACGAAGTTTTCCAA
AAGACCAACGCACTGAAAAATATAAAGAAAAATCAAAAGAAAACAGATAG
ACTACAATTATGGGCTTTAAGTACTAATCTGAAAATGGAAGTGTACAAGG
ATGAGCAGAAATGGTTGAAATTTAAAAAAGAAGAAGGAATCACGCGTACT
TTTGATGATAGTGAAAGTGTAAATGATAGCTGTGAGAATAAAGTGCTGAA
AAACAGTGACGGTCGAGCTATGGATCAGATTGATTCTGAAAGCACCACCA
AATTATCGGAGGAAGGAATGGATTTGGCTATAGACTTAGACAGACCATTT
GAATCACGTAGATCATTTGACCATACAGATGGTGGTAGCATTAAACCAAT
GCAGAAGTCAACACCAACAAAGCTTCAAGATGTGCCAGAGGACAAGAATC
CCTTATTGATGAATACTACAACAGATATGAATCATATCAAGCCTGATCAT
GATTTTATGGCAATTCGAGTGCAACCATCTGGTAAATCAAACATAGAATC
TAGCTCGAAGTGTTTAAATATACCACAGAATCCTGATGTAACTTTGGTGC
CACTTACTTCGGAGAAACACCTTATTGGCGACCACGAAGACCATAGTCAA
TTATCCCGACAGAACGCAGTAATCAGTGATCATTTGAATAACAACGATAA
CGAAGAATCACTCAAAAACAACTGACGGACTATTTTTTTAAAACTTAATT
TGTATAGGTTCAAAATGTGCTATTCCATTTTATATCCATACAGGAGGGTG
GACGAGCATTTTCAGAGGGTAAACCGAGAAGAATTTCCAGGGGTCTAAGG
AAAGTTATTTTTAAAGAAAGTTATTCTAAAAATTCCAGTGGGTAAATGAC
TAATTTTAGTTCGTCAACCTAAGGTATTAAGAAAAAGATTTTCAAGACTT
TTAGCAAATTTTGCCATCTTCCAGGGGGCATCATTACATGCATTGTACAT
TTTGAAAAACTTTTTTTGGCTTAAAAAGACTCGTCTACCCCCCTGTATGG
AAATTAAATGGAACAGCCCAATTAGAAAGAGGCAACATGTTATAATACAA
CTTTATTTGGGAACTAGACGATGTTAAAGGACGTTTTTTGACGATTGTAC
CAGCTGAAGTGTATGGAAGAAAACACAAAGGACCAGAGCTTTGATGAACA
ATTTATGCTCGTTAAGCTCGATAACTTTTACATGAACACATATTCATTTA
CTTATATAGAAGAAAATTTTATTCCTACTGAAGAAATCTTGTCCGGACGA
TCTCAATCGAACGCAATCGAATCTCAATCGAATATTACTGCAATTTTCAG
ATTCGATTGATATTCGATTGAGTTCGAATGATGTTCGATTGCGTTCGATT
GCGTTCGATCGTCGCTTCATTGACCCCCGGATTGTTCATCGCATAATTTC
TACGGGAAATTGAAAGTAATTTCATTCGGCTTGTGATATTTGAGAGCTTA
GATGTCGGGAAGCTGCAAGAATAAAGCCAGACGATCTCAATCGAACGGAA
TCGACGATCGAAACAGTCGAACAACAATCGAACCAATCGAATATTACCCA
GAATTTTGACGTTCGATTGAGATTCGATTGCGTTCGACAATCGAATTTCA
ATCGGTCGATTGCGTTGGATTGATGTTCGATTGCGTTCGACAATCGAATT
TCAATCGGTCGATTGCGTTCGATTTGGTTCGACTGGTTCGATCGTCGATT
CCGTTCGATTGAGATCGTCTTGTTTTGTTGACAAATAGTCTGTATGTAAA
GGACCAAAATTAAATCAATTTGTAATTACATTTCAGGGTGTGTTTTTCAC
TCCTTTACTTGATAATTACACCTCTGTCTCAATGCCCTGATGGAACTTTT
GTGCAACACCCG Coding sequence (CDS) from alignment at scaffold_77:43277..47688- >TCONS_00072396 ID=TCONS_00072396|Name=TCONS_00072396|organism=Clytia hemisphaerica|type=CDS|length=1236bp|location=Sequence derived from alignment at scaffold_77:43277..47688- (Clytia hemisphaerica)
ATGCCAGCCATTTCAAATAACTTACGAAACTACATAGAGCTGGTGGAAGA
ACGGAATATATCATACAGGAAATCAGCCATCTTTTGGGATCAGGTACACA
AATATGCCAATATCTCACTAATCATTTTGACCTCTGTTGCGACTGTCTTA
TCTGTAATGGAAAGTTCGATTCCAGTGTATGTTGTTCCGATAATTACTGG
AATTGCGACGATGATTTCAAGCATGATCGGTGTCTTTAAACCATACGAAA
AACNTACTGGGATTGCGACGATGATTTCAAGCATGATCGGTGTCCTTAAA
CCATACGAAAAACGAAATGAACAAATGGCTTCTTCAAGGAAATTTAAGAA
ACTGATGTTAAATTTAATTTCAGCTGAAAGTATTGATGATTATAAGAAAG
TGAGATCTGAAATCCAAGATGCAATGTTGGATGAACCTTTTACGAGCTCT
GTTAAAAAATTGAAGAAACAGCGAGCCGCTGAGAAAAAGGATGCAATTGG
TGTGAAATCTACAGATTGTAAAATACAGATCGGGGGCCAAGACGAAAACG
AAGTTTTCCAAAAGACCAACGCACTGAAAAATATAAAGAAAAATCAAAAG
AAAACAGATAGACTACAATTATGGGCTTTAAGTACTAATCTGAAAATGGA
AGTGTACAAGGATGAGCAGAAATGGTTGAAATTTAAAAAAGAAGAAGGAA
TCACGCGTACTTTTGATGATAGTGAAAGTGTAAATGATAGCTGTGAGAAT
AAAGTGCTGAAAAACAGTGACGGTCGAGCTATGGATCAGATTGATTCTGA
AAGCACCACCAAATTATCGGAGGAAGGAATGGATTTGGCTATAGACTTAG
ACAGACCATTTGAATCACGTAGATCATTTGACCATACAGATGGTGGTAGC
ATTAAACCAATGCAGAAGTCAACACCAACAAAGCTTCAAGATGTGCCAGA
GGACAAGAATCCCTTATTGATGAATACTACAACAGATATGAATCATATCA
AGCCTGATCATGATTTTATGGCAATTCGAGTGCAACCATCTGGTAAATCA
AACATAGAATCTAGCTCGAAGTGTTTAAATATACCACAGAATCCTGATGT
AACTTTGGTGCCACTTACTTCGGAGAAACACCTTATTGGCGACCACGAAG
ACCATAGTCAATTATCCCGACAGAACGCAGTAATCAGTGATCATTTGAAT
AACAACGATAACGAAGAATCACTCAAAAACAACTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00072396-exon-scaffold_77-1575043694:47642..47688 | TCONS_00072396-exon-scaffold_77-1575043694:47642..47688 | Clytia hemisphaerica | exon |
| TCONS_00072396-exon-scaffold_77-1575043694:43277..45719 | TCONS_00072396-exon-scaffold_77-1575043694:43277..45719 | Clytia hemisphaerica | exon |
| TCONS_00072396-exon-scaffold_77-1510915933:47642..47688 | TCONS_00072396-exon-scaffold_77-1510915933:47642..47688 | Clytia hemisphaerica | exon |
| TCONS_00072396-exon-scaffold_77-1510915933:43277..45719 | TCONS_00072396-exon-scaffold_77-1510915933:43277..45719 | Clytia hemisphaerica | exon |
| TCONS_00072396-exon-scaffold_77-1491911889:47642..47688 | TCONS_00072396-exon-scaffold_77-1491911889:47642..47688 | Clytia hemisphaerica | exon |
| TCONS_00072396-exon-scaffold_77-1491911889:43277..45719 | TCONS_00072396-exon-scaffold_77-1491911889:43277..45719 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| scaffold_77 | supercontig | scaffold_77:43277..47688 - |
Blast
The following BLAST results are available for this feature:
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