|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072382 ID=TCONS_00072382|Name=TCONS_00072382|organism=Clytia hemisphaerica|type=transcript|length=807bp
CAAgtacaataaaaaaaatgtttaaaaaggaAAGCAAacgtttttcaata
tttatacTCATTGCTGGTGCGATTACTTTACAATTGACCGCGGTCCAGAC
TGAATGGTGGTGGCAACAAGCATCACCAGTTAGAAGTGTTGCAGAGATTA
AATCATCCAAGACCTTCTTTTGGAAAGGTTTAAGGAAAGCGTGTTTGTCA
ATTCCACCGGCAACCGAAGAAATATGTAAACCACTGAAGGATTATGGGAT
GGATGGAGATTCGATAACGGCAGTCCGCTGGTTAATGTATATTTCAATTG
GAATTGCATGTTTGGAGCTTGTTTTCATGATGATCATTTATTTGGTAACT
CGTCGTTTATTCATGGACCTCGTGGCAATTTCGTCATTACTTGCTGCATT
GGTGGCAACAGCTGGTCTTGGGTTGTACACCAAAGAAAACCCAACGTTGT
TTAGTTTCTTTGATCTCTATGGTTACTCGTACATCTGTGGATGGTTAGGT
GTCTGTTGTCATGTGCTAGCCTCGTATGCATCACTGTTGCTACGTCTGGA
CCATAATGGTGTCTCGTTCCTTGGTGAAAAAGAAATGGTGCGCCATGATC
GTAAAAAGTCGACGGCCGTTGAACttgaatgaaatttgaattCGAATTCG
AAATACAATACAATCCAAACAAACGGGGAAACGGGAGTTTTTTCGGTATC
AGTTACGTATGATTCATCACAAAAGTCGTGCTTTTTCTACATCCATGAAG
AAACGGCTTTAAACTCTCGCACGCTATATTTTTCATGCATAACCATCAAC
TTTTATG Run BLAST on NCBI protein sequence of TCONS_00072382-protein >TCONS_00072382-protein ID=TCONS_00072382-protein|Name=TCONS_00072382-protein|organism=Clytia hemisphaerica|type=polypeptide|length=209bp
STIKKMFKKESKRFSIFILIAGAITLQLTAVQTEWWWQQASPVRSVAEIK
SSKTFFWKGLRKACLSIPPATEEICKPLKDYGMDGDSITAVRWLMYISIG
IACLELVFMMIIYLVTRRLFMDLVAISSLLAALVATAGLGLYTKENPTLF
SFFDLYGYSYICGWLGVCCHVLASYASLLLRLDHNGVSFLGEKEMVRHDR
KKSTAVELE Run BLAST on NCBI transcript from alignment at scaffold_77:498593..501534+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072382 ID=TCONS_00072382|Name=TCONS_00072382|organism=Clytia hemisphaerica|type=transcript|length=2942bp|location=Sequence derived from alignment at scaffold_77:498593..501534+ (Clytia hemisphaerica)
CAAgtacaataaaaaaaatgtttaaaaaggaAAGCAAacgtttttcaata
tttatacTCATTGCTGGTGCGATTACTTTACAATTGACCGCGGTCCAGAC
TGAATGGTGGTGGCAACAAGCATCACCAGTTAGAAGTGTTGCAGAGATTA
AATCATCCAAGACCTTCTTTTGGAAAGGTTTAAGGAAAGCGTGTTTGTCA
ATTCCACCGGCAACCGAAGAAATATGTAAACCACTGAAGGATTATGGGAT
GGATGGAGGTAAGTTACGTGATTTTACATTATAGATACTGTCCTCGACTA
CATGTATTTTGTCTACCCATATAACAGActtgcattatgcttagcattct
attgttcNCCCttgattacatgtttttttaataagtgtCTACCCCTATAT
CAGTcttgcattatgcttagcattctattgttcttaaacaataggCTACA
ATAGAGCCACTGTtaaggtaccaaaaactgagcctgcgaATGCTTATAAa
ctttatgcttataaaaatatgaaGGTGGGCCAAAACTGCAGGTTGTCCCA
AAGCGTTTCAGAGCGTGTATCTGCCATAACTTTCGTGTCTGTGCGTTACA
CCCCTAGAAagattgggtgttttagagtccgtgaagctttaaaattgttc
ttaacttgctgttaatattttggtaatgggagcctcatgttcttataaag
attgTTCTTGTTTTATCAGATTCGATAACGGCAGTCCGCTGGTTAATGTA
TATTTCAATTGGAATTGCATGTTTGGAGCTTGTTTTCATGATGATCATTT
ATTTGGTAACTCGTCGTTTATTCATGGACCTCGTGGCAATTTCGTCATTA
CTTGCTGGTGAGCTGgcttttatcaattatttcagAGCTGGAAAATATTG
AAAGATGCCATTGGATTGCCTTTGAAAGAGGGCAACTTGCTGCCCACTTA
AGCTCACAATTAGCGAGTTTGTGTATCAGTGTTTTCCTGCGACGGAAATG
GCTACCTTCTCATCTGTCtctttttattcttattttttgaagcctttgga
tgttcctTACTCTTGGTAAAGTTTTCCAACACTCCCCCCCCATGAAACTT
ATTAGGATCCTCCCCCCATTTactattttttaagaattttttcagccttC
AAAGAAAAGGTCCCTTATTCTGCTCTAAATAGCTTCATTTTaacctatat
ttaccttatttttgggtttttgcaAGTACAATTTCCAATCCCCCCCGGCA
ATGAGgttccccccgtttattaaaattttgaaaattttccaagccCCCCT
CCCCGGTGTTGTTTTTCagcttttaaatgtttttacctTGTTCTTAATTT
GGGATCAAAGCTTTGCTCTTAGGTTcaaaataaacgggggggggggttag
aaaattttcgagatttaTATAAATGGGGGggacccaaaaataaggtaaat
ataggctaaaatcaggctattttgagcaaaataaggggcgttctctttga
cagctgaaaataatcttaaaaatgaataaacgggGATCTTAATAAGGTTC
GGGGGGttggaaaactttcgaaaaatgaaCAAGCGGGGGGCccatttatt
tggaacctacGAGTATGTtcttacagtggagtctccataactcgaacatg
cacgggggaatacaaatttgttcgagtttaaGAAATCTCGAGTTATGGAg
caaggtttataaggcattgttaactgaatggACCATTtaacttgtttgag
ttaaggcccctaaggagacattcaagtagtagaggttcgagttaaagagg
ctCCACTGtatcagtggcgttgtggcaggggggccggggggccatgcccc
cccccccacccccccaAGCTGAGCTTTATTGAAGGGGCTCCGAAGAGCAA
GGggcaccaaaagagattttttttaaaacgccccaattttaaaaatcata
ctttatgcaccttaaattgcgccccaggaccaatttttCTGAGATagttt
taaaatacttgcaattttttttcgctcGCAATACAGCTAATTGGTAattt
ctttgcaatctagctaaaTTTTACAAGTTTTCTTGTGTACAacatagcat
tattaaatgaaaatctaactgcaccccaagaccaatttgctgacaacaat
attgaaatcataaatcataaattttttcCCTCACAtcgctcgcattacac
attgtttctttaatttgtcaaatttgtctatttttatttagtgatttagg
gtatcttggcagtcgattctcagaattttctagtcggccccaaccatggt
ggggcctgtttttcccttttccattcatcaaagatatctaaactaaatat
ttccttcctcattatgcctaggcaaatgaattagtaaaagcctagaaact
ggtgggtggggGCACCACTTTGAAAGATTGGGGGGAGGGgcaccatttaa
aaaaaattgactttggcccctccagaaaaattttcccacaacgccactgc
actgtatatagtttgttcttatacatTTCAGCATTGGTGGCAACAGCTGG
TCTTGGGTTGTACACCAAAGAAAACCCAACGTTGTTTAGTTTCTTTGATC
TCTATGGTTACTCGTACATCTGTGGATGGTTAGGTGTCTGTTGTCATGTG
CTAGCCTCGTATGCATCACTGTTGCTACGTCTGGACCATAATGGTGTCTC
GTTCCTTGGTGAAAAAGAAATGGTGCGCCATGATCGTAAAAAGTCGACGG
CCGTTGAACttgaatgaaatttgaattCGAATTCGAAATACAATACAATC
CAAACAAACGGGGAAACGGGAGTTTTTTCGGTATCAGTTACGTATGATTC
ATCACAAAAGTCGTGCTTTTTCTACATCCATGAAGAAACGGCTTTAAACT
CTCGCACGCTATATTTTTCATGCATAACCATCAACTTTTATG Coding sequence (CDS) from alignment at scaffold_77:498593..501534+ >TCONS_00072382 ID=TCONS_00072382|Name=TCONS_00072382|organism=Clytia hemisphaerica|type=CDS|length=1890bp|location=Sequence derived from alignment at scaffold_77:498593..501534+ (Clytia hemisphaerica)
AgtacaataaaaaaaatgtttaaaaaggaAAGCAAacgtttttcaatatt
tatacTCATTGCTGGTGCGATTACTTTACAATTGACCGCGGTCCAGACTG
AATGGTGGTGGCAACAAGCATCACCAGTTAGAAGTGTTGCAGAGATTAAA
TCATCCAAGACCTTCTTTTGGAAAGGTTTAAGGAAAGCGTGTTTGTCAAT
TCCACCGGCAACCGAAGAAATATGTAAACCACTGAAGGATTATGGGATGG
ATGGAGATTCGATAACGGCAGTCCGCTGGTTAATGTATATTTCAATTGGA
ATTGCATGTTTGGAGCTTGTTTTCATGATGATCATTTATTTGGTAACTCG
TCGTTTATTCATGGACCTCGTGGCAATTTCGTCATTACTTGCTGCATTGG
TGGCAACAGCTGGTCTTGGGTTGTACACCAAAGAAAACCCAACGTTGTTT
AGTTTCTTTGATCTCTATGGTTACTCGTACATCTGTGGATGGTTAGGTGT
CTGTTGTCATGTGCTAGCCTCGTATGCATCACTGTTGCTACGTCTGGACC
ATAATGGTGTCTCGTTCCTTGGTGAAAAAGAAATGGTGCGCCATGATCGT
AAAAAGTCGACGGCCGTTGAACttgaatgaAgtacaataaaaaaaatgtt
taaaaaggaAAGCAAacgtttttcaatatttatacTCATTGCTGGTGCGA
TTACTTTACAATTGACCGCGGTCCAGACTGAATGGTGGTGGCAACAAGCA
TCACCAGTTAGAAGTGTTGCAGAGATTAAATCATCCAAGACCTTCTTTTG
GAAAGGTTTAAGGAAAGCGTGTTTGTCAATTCCACCGGCAACCGAAGAAA
TATGTAAACCACTGAAGGATTATGGGATGGATGGAGATTCGATAACGGCA
GTCCGCTGGTTAATGTATATTTCAATTGGAATTGCATGTTTGGAGCTTGT
TTTCATGATGATCATTTATTTGGTAACTCGTCGTTTATTCATGGACCTCG
TGGCAATTTCGTCATTACTTGCTGCATTGGTGGCAACAGCTGGTCTTGGG
TTGTACACCAAAGAAAACCCAACGTTGTTTAGTTTCTTTGATCTCTATGG
TTACTCGTACATCTGTGGATGGTTAGGTGTCTGTTGTCATGTGCTAGCCT
CGTATGCATCACTGTTGCTACGTCTGGACCATAATGGTGTCTCGTTCCTT
GGTGAAAAAGAAATGGTGCGCCATGATCGTAAAAAGTCGACGGCCGTTGA
ACttgaatgaAgtacaataaaaaaaatgtttaaaaaggaAAGCAAacgtt
tttcaatatttatacTCATTGCTGGTGCGATTACTTTACAATTGACCGCG
GTCCAGACTGAATGGTGGTGGCAACAAGCATCACCAGTTAGAAGTGTTGC
AGAGATTAAATCATCCAAGACCTTCTTTTGGAAAGGTTTAAGGAAAGCGT
GTTTGTCAATTCCACCGGCAACCGAAGAAATATGTAAACCACTGAAGGAT
TATGGGATGGATGGAGATTCGATAACGGCAGTCCGCTGGTTAATGTATAT
TTCAATTGGAATTGCATGTTTGGAGCTTGTTTTCATGATGATCATTTATT
TGGTAACTCGTCGTTTATTCATGGACCTCGTGGCAATTTCGTCATTACTT
GCTGCATTGGTGGCAACAGCTGGTCTTGGGTTGTACACCAAAGAAAACCC
AACGTTGTTTAGTTTCTTTGATCTCTATGGTTACTCGTACATCTGTGGAT
GGTTAGGTGTCTGTTGTCATGTGCTAGCCTCGTATGCATCACTGTTGCTA
CGTCTGGACCATAATGGTGTCTCGTTCCTTGGTGAAAAAGAAATGGTGCG
CCATGATCGTAAAAAGTCGACGGCCGTTGAACttgaatga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072382-exon-scaffold_77-1491911889:498593..498850 | TCONS_00072382-exon-scaffold_77-1491911889:498593..498850 | Clytia hemisphaerica | exon |
| TCONS_00072382-exon-scaffold_77-1510915933:498593..498850 | TCONS_00072382-exon-scaffold_77-1510915933:498593..498850 | Clytia hemisphaerica | exon |
| TCONS_00072382-exon-scaffold_77-1575043694:498593..498850 | TCONS_00072382-exon-scaffold_77-1575043694:498593..498850 | Clytia hemisphaerica | exon |
| TCONS_00072382-exon-scaffold_77-1491911889:499312..499449 | TCONS_00072382-exon-scaffold_77-1491911889:499312..499449 | Clytia hemisphaerica | exon |
| TCONS_00072382-exon-scaffold_77-1510915933:499312..499449 | TCONS_00072382-exon-scaffold_77-1510915933:499312..499449 | Clytia hemisphaerica | exon |
| TCONS_00072382-exon-scaffold_77-1575043694:499312..499449 | TCONS_00072382-exon-scaffold_77-1575043694:499312..499449 | Clytia hemisphaerica | exon |
| TCONS_00072382-exon-scaffold_77-1491911889:501124..501534 | TCONS_00072382-exon-scaffold_77-1491911889:501124..501534 | Clytia hemisphaerica | exon |
| TCONS_00072382-exon-scaffold_77-1510915933:501124..501534 | TCONS_00072382-exon-scaffold_77-1510915933:501124..501534 | Clytia hemisphaerica | exon |
| TCONS_00072382-exon-scaffold_77-1575043694:501124..501534 | TCONS_00072382-exon-scaffold_77-1575043694:501124..501534 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_77 | supercontig | scaffold_77:498593..501534 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR004031 | PMP22/EMP/MP20/Claudin |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0016021 |
integral component of membrane |
Blast
The following BLAST results are available for this feature:
|
