TCONS_00072380 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072380
Unique NameTCONS_00072380
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length308

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072380 ID=TCONS_00072380|Name=TCONS_00072380|organism=Clytia hemisphaerica|type=transcript|length=308bp
TACCAGCTTCTGCGTTTCTTAAGATAATGGACTTCAAATCACCGATCGAA
ACACATTCTAATAACATCTCTGATACCGTGTTGCGTTTAAAAGACGTCCC
ATTTGTGTTCAACAGACGTTCTCCCGTCTCCCCTTCGGTACCGTGCAAAT
CGACAAACAATTTTGGATCGATGGTTTCATTTTCCATATCACCCGTCTCG
ACGTGTATTCGATACNCTCCCCTTCGGTACCGTGTAAATCGACAAACAAT
TTTGGATCGATGGTTTCATTTTCCATATCACCCGTCTCGACGTGTATTCG
ATACAATG
Run BLAST on NCBI

protein sequence of TCONS_00072380-protein

>TCONS_00072380-protein ID=TCONS_00072380-protein|Name=TCONS_00072380-protein|organism=Clytia hemisphaerica|type=polypeptide|length=102bp
PASAFLKIMDFKSPIETHSNNISDTVLRLKDVPFVFNRRSPVSPSVPCKS
TNNFGSMVSFSISPVSTCIRYXPLRYRVNRQTILDRWFHFPYHPSRRVFD
TM
Run BLAST on NCBI

transcript from alignment at scaffold_77:449186..450106+

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072380 ID=TCONS_00072380|Name=TCONS_00072380|organism=Clytia hemisphaerica|type=transcript|length=921bp|location=Sequence derived from alignment at scaffold_77:449186..450106+ (Clytia hemisphaerica)
TACCAGCTTCTGCGTTTCTTAAGATAATGGACTTCAAATCACCGATCGAA
ACACATTCTAATAACATCTCTGATACCTACATACAAAAATGGTACACATA
GTAcgccaaatccgcgaaatttaatccccgcgaaagtttatcccattaaa
gtactacACCAACGTCACTGTACAGTGTGTCCCgcaaaaaagcaaacaaa
tgaCTTTTATACTTAATGTTTCCAttcaaaaacctattcaataaTGGAga
gaaaatggagaaaaaaattttacccccactgtcgaggatattgatttttc
gaagtaccTTACCCCTTGGATATcttactttattagtaaagacccccctg
gatatccactcttaaaaatatgctcaaccccctggatcaCCCATCTTctt
ttataaagatgcttacttCTGGATATCATATTTCTTACTTGAAAAGagac
tttaccccctggatgtccgctcccttgtagatattaaaccccctggatat
ccactggAAATCGTCAACCTCTTGGATatccaatatcctcaacaggggag
GGGCTAtatctggaaaagcccaatcttaGGAATTGAATATTACACAAAAA
GGTAGTCTTCTTTCGATTATTTTAAGCCCAGTTTAGATAAtgaattttta
ggattttactTCATACTTTATTACGAACTTATAACATACCGTGTTGCGTT
TAAAAGACGTCCCATTTGTGTTCAACAGACGTTCTCCCGTCTCCCCTTCG
GTACCGTGCAAATCGACAAACAATTTTGGATCGATGGTTTCATTTTCCAT
ATCACCCGTCTCGACGTGTATTCGATACNCTCCCCTTCGGTACCGTGTAA
ATCGACAAACAATTTTGGATCGATGGTTTCATTTTCCATATCACCCGTCT
CGACGTGTATTCGATACAATG

Coding sequence (CDS) from alignment at scaffold_77:449186..450106+

>TCONS_00072380 ID=TCONS_00072380|Name=TCONS_00072380|organism=Clytia hemisphaerica|type=CDS|length=612bp|location=Sequence derived from alignment at scaffold_77:449186..450106+ (Clytia hemisphaerica)
CCAGCTTCTGCGTTTCTTAAGATAATGGACTTCAAATCACCGATCGAAAC
ACATTCTAATAACATCTCTGATACCGTGTTGCGTTTAAAAGACGTCCCAT
TTGTGTTCAACAGACGTTCTCCCGTCTCCCCTTCGGTACCGTGCAAATCG
ACAAACAATTTTGGATCGATGGTTTCATTTTCCATATCACCCGTCTCGAC
GTGTATTCGATACNCTCCCCTTCGGTACCGTGTAAATCGACAAACAATTT
TGGATCGATGGTTTCATTTTCCATATCACCCGTCTCGACGTGTATTCGAT
ACAATGCCAGCTTCTGCGTTTCTTAAGATAATGGACTTCAAATCACCGAT
CGAAACACATTCTAATAACATCTCTGATACCGTGTTGCGTTTAAAAGACG
TCCCATTTGTGTTCAACAGACGTTCTCCCGTCTCCCCTTCGGTACCGTGC
AAATCGACAAACAATTTTGGATCGATGGTTTCATTTTCCATATCACCCGT
CTCGACGTGTATTCGATACNCTCCCCTTCGGTACCGTGTAAATCGACAAA
CAATTTTGGATCGATGGTTTCATTTTCCATATCACCCGTCTCGACGTGTA
TTCGATACAATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044942XLOC_044942Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072380-proteinTCONS_00072380-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072380-exon-scaffold_77-1491911889:449186..449257TCONS_00072380-exon-scaffold_77-1491911889:449186..449257Clytia hemisphaericaexon
TCONS_00072380-exon-scaffold_77-1510915933:449186..449257TCONS_00072380-exon-scaffold_77-1510915933:449186..449257Clytia hemisphaericaexon
TCONS_00072380-exon-scaffold_77-1575043694:449186..449257TCONS_00072380-exon-scaffold_77-1575043694:449186..449257Clytia hemisphaericaexon
TCONS_00072380-exon-scaffold_77-1491911889:449871..450106TCONS_00072380-exon-scaffold_77-1491911889:449871..450106Clytia hemisphaericaexon
TCONS_00072380-exon-scaffold_77-1510915933:449871..450106TCONS_00072380-exon-scaffold_77-1510915933:449871..450106Clytia hemisphaericaexon
TCONS_00072380-exon-scaffold_77-1575043694:449871..450106TCONS_00072380-exon-scaffold_77-1575043694:449871..450106Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_77supercontigscaffold_77:449186..450106 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0.372289	0	0.447043	0.238535	4.6753	2.80857	1.52335	2.14539	2.34569	0.398395	7.65823	9.4641	1.57513	1.19077	0.821326	1.12006	7.21098	6.88249	0	0	0.397534	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072380 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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