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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072367 ID=TCONS_00072367|Name=TCONS_00072367|organism=Clytia hemisphaerica|type=transcript|length=1305bp
taaagttgttgttgttgttatttcatttgaaatataTATTTCTATTTGAA
AGACTGAAAAATCTTCCTAAATCATCATTGTTTAGTCAATAAATAATGGC
ACAGGCTGGAAAAGTTGCAGAAATCTTTACGACTGCTGGCGAATCTTTCA
CCAAACTGGGTAACCTGGCAATGTCTTTGCAACCCGGAGCAGAAAAGGGG
TCTACAGATAGCAAATGGGGTGATGAAGAAATTGATATGCTGCACTCCGC
TGTCAAACAGTTTGGATCAGAAGTAGAAAAAATCAGCACCAAAGTACGTT
CCAAAGCTTCGGCGCAACAAAAGTTAGTGCTGAGACAGAAAGCTCTTCTT
CAAGGATCAAATGCAGGTGCATCTTCTGTGAAAATCAATTCAACTCTTGG
GACCAATTTTCAAACTATTCAGACATTGAACTCATCAAATGTAACAAATG
CAACCATTGTTGGGTTGAGACCACAGATAAAAGTTGCCACAACACCACGT
CAGATTGGACAAAAAGGCCCTTATCAGACGATGACTATTCGTGGAGCTAC
ACCTATGAACACAAcacaaatgaccaaaaaaattcGGCTTGATGCCTCAT
CCTTAAGTGCTCTCACATCCAATTCGCCCATGAACACAATAATCAGACAG
AGCAATCCTGTTGCGATTGCCCCTGCTGGAAACACTGGTGCTATAGGNAT
TCGCCCATGAACACTATAATCAGACAGAGCAATCCTGTTGCGATTGCCCC
TGCTGGAAACACTGGTGCTATAGGTGTTCCAATTATGGCTTCTAGTCAAG
GTTTTCAAGTTATTGTTCCTCCACAAAAGACTGCTGTGAGTGGAGCTACA
ATGCTACCTGTCTCTTTATTACAATCTGGAATTGTGCAGAAAGTTTCTAA
TGTTGCCTCTGCAGCAAATGTTGACATTGAGAGTTAATTTAACATATTTT
TCATTCTCACTCATAGCTTATTTCTCTCTGTGTATttattgtttaatttt
tttgagtcgaatGAGGTAATATAAGGTCTAAGACAAAGAGGTATTTAACT
TGCTCAGCAAACAGCAAAGGGTGCCTTTTTTAataattgaacaaaaattc
GATTTCTTTACAAGAGCATATTTTTCTGAACTTTTATTGTTACATGGTGT
TGTTCCTGCAGCAGATAATCTCAGATCAATTCCTCTAAAAAGTTTCCTTG
TATAAAATTGTCTTGAAGGCCTATTGATATAGTGTTTCTAATATGaagct
tcatttttatttaatgtATTATAATTTAGTAGAACAATATATTCAGTAAA
AGAAA Run BLAST on NCBI protein sequence of TCONS_00072367-protein >TCONS_00072367-protein ID=TCONS_00072367-protein|Name=TCONS_00072367-protein|organism=Clytia hemisphaerica|type=polypeptide|length=204bp
MAQAGKVAEIFTTAGESFTKLGNLAMSLQPGAEKGSTDSKWGDEEIDMLH
SAVKQFGSEVEKISTKVRSKASAQQKLVLRQKALLQGSNAGASSVKINST
LGTNFQTIQTLNSSNVTNATIVGLRPQIKVATTPRQIGQKGPYQTMTIRG
ATPMNTTQMTKKIRLDASSLSALTSNSPMNTIIRQSNPVAIAPAGNTGAI
XIRP Run BLAST on NCBI transcript from alignment at scaffold_77:338311..339684+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072367 ID=TCONS_00072367|Name=TCONS_00072367|organism=Clytia hemisphaerica|type=transcript|length=1374bp|location=Sequence derived from alignment at scaffold_77:338311..339684+ (Clytia hemisphaerica)
taaagttgttgttgttgttatttcatttgaaatataTATTTCTATTTGAA
AGACTGAAAAATCTTCCTAAATCATCATTGTTTAGTCAATAAATAATGGC
ACAGGCTGGAAAAGTTGCAGAAATCTTTACGACTGCTGGCGAATCTTTCA
CCAAACTGGGTAACCTGGCAATGTCTTTGCAACCCGGAGCAGAAAAGGGG
TCTACAGATAGCAAATGGGGTGATGAAGAAATTGATATGCTGCACTCCGC
TGTCAAACAGTTTGGATCAGAAGTAGAAAAAATCAGCACCAAAGTACGTT
CCAAAGCTTCGGCGCAACAAAAGTTAGTGCTGAGACAGAAAGCTCTTCTT
CAAGGATCAAATGCAGGTGCATCTTCTGTGAAAATCAATTCAACTCTTGG
GACCAATTTTCAAACTATTCAGACATTGAACTCATCAAATGTAACAAATG
CAACCATTGTTGGGTTGAGACCACAGATAAAAGTTGCCACAACACCACGT
CAGATTGGACAAAAAGGCCCTTATCAGACGATGACTATTCGTGGAGCTAC
ACCTATGAACACAAcacaaatgaccaaaaaaattcGGCTTGATGCCTCAT
CCTTAAGTGCTCTCACATCCAATTCGCCCATGAACACAATAATCAGACAG
AGCAATCCTGTTGCGATTGCCCCTGCTGGAAACACTGGTGCTATAGGNAT
TCGCCCATGAACACTATAATCAGACAGAGCAATCCTGTTGCGATTGCCCC
TGCTGGAAACACTGGTGCTATAGGTGTTCCAATTATGGCTTCTAGTCAAG
GTTTTCAAGTTATTGTTCCTCCACAAAAGACTGCTGTGAGTGGAGCTACA
ATGCTACCTGTCTCTTTATTACAATCTGGAATTGTGCAGAAAGTTTCTAA
TGTTGCCTCTGCAGCAAATGTTGACATTGAGAGTTAATTTAACATATTTT
TCATTCTCACTCAAAGCTTATTTCTCTCTGTGTATttattgtttaatttt
tttgaNTTAAACATATTTTTCATTCTCACTCATAGCTTATTTCTCTCTGT
GTATttattgtttaatttttttgagtcgaatGAGGTAATATAAGGTCTAA
GACAAAGAGGTATTTAACTTGCTCAGCAAACAGCAAAGGGTGCCTTTTTT
AataattgaacaaaaattcGATTTCTTTACAAGAGCATATTTTTCTGAAC
TTTTATTGTTACATGGTGTTGTTCCTGCAGCAGATAATCTCAGATCAATT
CCTCTAAAAAGTTTCCTTGTATAAAATTGTCTTGAAGGCCTATTGATATA
GTGTTTCTAATATGaagcttcatttttatttaatgtATTATAATTTAGTA
GAACAATATATTCAGTAAAAGAAA Coding sequence (CDS) from alignment at scaffold_77:338311..339684+ >TCONS_00072367 ID=TCONS_00072367|Name=TCONS_00072367|organism=Clytia hemisphaerica|type=CDS|length=615bp|location=Sequence derived from alignment at scaffold_77:338311..339684+ (Clytia hemisphaerica)
ATGGCACAGGCTGGAAAAGTTGCAGAAATCTTTACGACTGCTGGCGAATC
TTTCACCAAACTGGGTAACCTGGCAATGTCTTTGCAACCCGGAGCAGAAA
AGGGGTCTACAGATAGCAAATGGGGTGATGAAGAAATTGATATGCTGCAC
TCCGCTGTCAAACAGTTTGGATCAGAAGTAGAAAAAATCAGCACCAAAGT
ACGTTCCAAAGCTTCGGCGCAACAAAAGTTAGTGCTGAGACAGAAAGCTC
TTCTTCAAGGATCAAATGCAGGTGCATCTTCTGTGAAAATCAATTCAACT
CTTGGGACCAATTTTCAAACTATTCAGACATTGAACTCATCAAATGTAAC
AAATGCAACCATTGTTGGGTTGAGACCACAGATAAAAGTTGCCACAACAC
CACGTCAGATTGGACAAAAAGGCCCTTATCAGACGATGACTATTCGTGGA
GCTACACCTATGAACACAAcacaaatgaccaaaaaaattcGGCTTGATGC
CTCATCCTTAAGTGCTCTCACATCCAATTCGCCCATGAACACAATAATCA
GACAGAGCAATCCTGTTGCGATTGCCCCTGCTGGAAACACTGGTGCTATA
GGNATTCGCCCATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072367-exon-scaffold_77-1491911889:338311..339253 | TCONS_00072367-exon-scaffold_77-1491911889:338311..339253 | Clytia hemisphaerica | exon |
| TCONS_00072367-exon-scaffold_77-1510915933:338311..339253 | TCONS_00072367-exon-scaffold_77-1510915933:338311..339253 | Clytia hemisphaerica | exon |
| TCONS_00072367-exon-scaffold_77-1575043694:338311..339253 | TCONS_00072367-exon-scaffold_77-1575043694:338311..339253 | Clytia hemisphaerica | exon |
| TCONS_00072367-exon-scaffold_77-1491911889:339323..339684 | TCONS_00072367-exon-scaffold_77-1491911889:339323..339684 | Clytia hemisphaerica | exon |
| TCONS_00072367-exon-scaffold_77-1510915933:339323..339684 | TCONS_00072367-exon-scaffold_77-1510915933:339323..339684 | Clytia hemisphaerica | exon |
| TCONS_00072367-exon-scaffold_77-1575043694:339323..339684 | TCONS_00072367-exon-scaffold_77-1575043694:339323..339684 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_77 | supercontig | scaffold_77:338311..339684 + |
Blast
The following BLAST results are available for this feature:
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