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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072355 ID=TCONS_00072355|Name=TCONS_00072355|organism=Clytia hemisphaerica|type=transcript|length=2135bp
TAAAGCttaggaaaaactttttttgaaaaaagaattgggCAAGAAAGAAG
TAACGAGAGGAAAACTCCTAAGTTTTCGTGACTAAAAGGGCTAAGACAGT
GTTCAGCTCAGCACGGTGCACTGGGAATTGGCTGTTTTATTGTCGAAAAT
CTCCTTTGAAAGAATTAACACTATATTAACTCAAGTAAATGAAATTGATC
CACAAAAACCGTAAGAATGAaagtaaaaatgtttttgataacAATCTTGT
TCGCTGGTCTTCTCCACATCACAACTCTGGTCATAGCTTCAAACGAAGCA
CTTACGCCAGACAATACAacacttgaaaaaaataacacaaCACTCGCAAC
AGACAACGCAACGCTTGCGATAAATAACCAAACACTTGGACAAAATGATA
CTACAGTTGCAGCAAATAATACCACCATCGGTAGCCATGGCAACAACCAA
AATATAACATCGGAAACAGATGAGACAATAGAGACGACAAAAGAAAAGGA
GAATGGAACTAGCattgaagaaaaagaattaCTACATGCGATCTTCTGGG
AAGTCAAACCGTTCATCTTCAAGAACTCGAAAGGAGAGATTGATGGAATC
ATTCCACAGATCTTTGAGCAAGCAAGTGTCTTTTGTAACGGTCGCAAGCC
TTTCATTCATTATAAAGTGAAAATGGATTCAAGGCGTGACTTTTATGATC
TGGCTCGATCAAACGTATCGTACCATTCAAACACATCCGTGTTAAAAAGT
GTCGACAAACAGCGGGCTTTCTGGGCCCCAGTCCTCTCCCCTACTAATAC
AAAGAACGACGGCTTTCTTAAAGAGCGAGCTCTCAGATCAtttcaaatct
taaaaacaacCCACATCAGTATTATCGTGAGACGGGACTTAATTTCATTA
CCTAACAAAATTTTCCGTGGCATCATGGCGTGCGAACAAATTTTCGTTCT
CGCAATTTTGCTAGCGATTATTGTTGGTATTTTTCTGTGGGTCATCGAAA
GATACCAAAACACCGATTTCCCGAATTCCTTTTGCCGAGGCGCGATGACT
GGTTTGTATTGGTCGATTGTTTCCATGACGACGGTAGGTTACGGAGATAT
TCAGCCGTCGTCGGCCGTGGGACGATTCGTGACGTGTTTCTGGTTGTTCA
TCGGAGTTATGGTAGGTTGTGTGATGACTGCAACGGTGACGGACGTCGTG
GCTGGAAACGATTTTGATATCCAAAATAAAAAGGTAGCTGTACTCGAAAA
CTCTTTTGAGGAGCGAACAGCGGAGAAGCAATATCGCACTAACGTGGTAT
CAGCAAAATCGTATGATGAAGTATTAGAAATGGTACGAAAACAAGAAGTC
TTTGCCGCCATGATGAATTCAGACGTAGCCGCATGGTATGACGAAATCAT
AAGTGATGATACAGCGGAAGTACCTTTGAGGATGGTTGCTAAGTTACCGG
CCAATCTGTACGTACATTGCTTGTTACCAACCGATCTCCTCCATAAGATG
AAGGTGATCTTCAAATGCATGTATTACCAGAAAGATGAAGTGTACACGTT
TGCCGAGGAGTCTTTCAAAGTGCATCATCATCCGCAGAACATCTACATCG
GTTCCACAGGTGATCTCATGAGTGAGAATGTCTTTTGTCGCGCTATTATC
GGTTTACTAGCCGGTTTGATCATTCTCGGTTTCGGATTCGATGGTTGGAA
GTATGTTCAGTTCCGAGTGAACACCAAGAAACACGGTGCAACAAACGGGG
AGAATAAAGAAATGACCAAGTATTATAACTCAGCACAAGCAGCTGCACTC
ATATAAGACAAGTTCTCTCGTTGAGACACCTGTTAATAACATTTCCAGTT
CAAAGCAGCGAGAAGGATGAGTAATCAGAAAGGCTTATCTAAAAAGCAGC
TCTTAGCAGTATTCAATGAAAGAATAATTACACACAAACAGAAGCCCAGT
CCGTTTTAAACTGGGGATTTGACAACTCTTGATGTCTTTTGACTATTATT
GACCGAAAAACGGCTAAGCAGCGACAAAGGATAAAAAATTGATTCAGAGT
AAATTAATAATGagcaaaattgttaaaattgaaCTGTATTTTGATAGGAT
AAGTTTGTGTATATTGGTTTTCAAAAAGACGAGGT Run BLAST on NCBI protein sequence of TCONS_00072355-protein >TCONS_00072355-protein ID=TCONS_00072355-protein|Name=TCONS_00072355-protein|organism=Clytia hemisphaerica|type=polypeptide|length=529bp
MKVKMFLITILFAGLLHITTLVIASNEALTPDNTTLEKNNTTLATDNATL
AINNQTLGQNDTTVAANNTTIGSHGNNQNITSETDETIETTKEKENGTSI
EEKELLHAIFWEVKPFIFKNSKGEIDGIIPQIFEQASVFCNGRKPFIHYK
VKMDSRRDFYDLARSNVSYHSNTSVLKSVDKQRAFWAPVLSPTNTKNDGF
LKERALRSFQILKTTHISIIVRRDLISLPNKIFRGIMACEQIFVLAILLA
IIVGIFLWVIERYQNTDFPNSFCRGAMTGLYWSIVSMTTVGYGDIQPSSA
VGRFVTCFWLFIGVMVGCVMTATVTDVVAGNDFDIQNKKVAVLENSFEER
TAEKQYRTNVVSAKSYDEVLEMVRKQEVFAAMMNSDVAAWYDEIISDDTA
EVPLRMVAKLPANLYVHCLLPTDLLHKMKVIFKCMYYQKDEVYTFAEESF
KVHHHPQNIYIGSTGDLMSENVFCRAIIGLLAGLIILGFGFDGWKYVQFR
VNTKKHGATNGENKEMTKYYNSAQAAALI Run BLAST on NCBI transcript from alignment at scaffold_77:129465..133385+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072355 ID=TCONS_00072355|Name=TCONS_00072355|organism=Clytia hemisphaerica|type=transcript|length=3921bp|location=Sequence derived from alignment at scaffold_77:129465..133385+ (Clytia hemisphaerica)
TAAAGCttaggaaaaactttttttgaaaaaagaattgggCAAGAAAGAAG
TAACGAGAGGAAAACTCCTAAGTTTTCGTGACTAAAAGGGCTAAGACAGT
GTTCAGCTCAGCACGGTGCACTGGGAATTGGCTGTTTTATTGTCGAAAAT
CTCCTTTGAAAGAATTAACACTATATTAACTCAAGTAAGTAATCGAATga
atatataaaataaaaatcaggCTTCAAAGCCGCATGATGCAAATTTAGAT
CTCCATTTCTTATAAGAGTCAAGAAATTTGAGGAATAAGGTTAGCAAAAG
TGTGTTATTTGATGTCGAAATACATCCAGTATTATTGGACATCGTTTAAA
GATTTATTGCGATTAAGATCAATATACATCAAGGTTACAGCTACGAGAGA
CCTTGAACCATAAACACATGATAGTGTTGTTCTTGTGGGAAAAGGTGCGA
TGAAAAGTTGGTTCTTAGTAAAGCTCTCGCTCAAGGAGAGATAATTTTTA
TATCAAACTTATTCCAAAATGATTAgtgttaaaaatgaagaaactgTTAA
CAATACAATGAATAATGTAAGGAAAACCAACTTTGCGCTTTTTCGCCcct
aactttttgagattaAGGCTTTTTTCCTTCGTTCACTCCTTTCTTTTGTC
TTCCAGCTTTTTTTtacttcttgatttttttttcatctactCGTTTAATC
TTCATTTCATTAGCGTTTTAAATAGAaacacaaaaaattaaattagcaAA
TTTGATTCTTGAGCGCTTTTACAGTTACAGTTCGATTAAAGCAAGGAACT
TGGTTAAAGTTAGGTGGTTGGCGAACTCTCAACAATAAATAGATTCGACA
GATGAGGTAACGATTCCTTCAGTGTCAGCAAATGTTTTAATTAAAttggt
ttttgatttttgttcttTGATATATCAGCTAAAGTTTTGATTAATGTAAG
TAAGAGCCGCGAAAAGTGTTTCTAGTTACGTAACACCAAACAAAACATCT
TTTCGTATTCGAAGCAGATTGTTCGGAGGGGTTTTATCAgttttatcatt
tgaaaatctctacAACTTCTTACTCGATCGATTCCCCTTGCCATTTGAGT
TCTATGGAGATGTTACTGTACTGTAGTAGCTTTGTTGGAATGTTAATGAT
CACTTTccaaagagagaaaaagaagaataattTAAGTTATCAAAACCTTG
AAGGCTCAATATCCAATAAGAATCTAGATGGAACGATATCGAGGCTCTTC
CTAAAGTTAATCTGGGTAGCTTAACGCGCTTAACAACATTTATGTCAAAG
GTTTAAAGGTTTAATACTCGGCCAGACTCGGCCCCACGCGCTTCGAGTCT
TTAAGTGTGTCTTTAAAACAAAACTCAGTTTGCACGGTCGTGATTAAACG
TTTCTGCTCGAAATATTAAGTCAAGATTATTGTTGTAATAATatcgtact
ttttcatttgtttttaataatcggaaaagaaattgtgaaatttttttgat
ttttcatttctttatttgcttgtgaGATACTAAACCTAACACATTTTTGT
TCTTtgaagagagagaaaaaatgttttggcGAATTTCTGGTTAGTTTACa
gactttcattttaaaaagagattttattTCAACATTTATTCGTGTATCCC
ACTGTAAACTTTTTCTAAGGTCANgctttcattaaaaaaaaaaactttca
aacttttattCGTGTATCCCGCTGTAAACTTTTTCTAAGGTCATTTTTTC
TGATCGTCTGAAGAACTATTTCGTCATTTTCACATCCGAAACTTTTCCAA
GAATCAAAACCATTTGAAAGGATGATCATTTCTAAATATGGTCAAATTCA
TTACATCAACACAGCGGGTTTCTCTCATAAATGGCCATTTCCCACTTTTC
CGGAATCAAGAACCTGCCTATCCACTCTCAGGCTTTACCTTGCTTTGACT
TTacttttttcacctttcagGTAAATGAAATTGATCCACAAAAACCGTAA
GAATGAaagtaaaaatgtttttgataacAATCTTGTTCGCTGGTCTTCTC
CACATCACAACTCTGGTCATAGCTTCAAACGAAGCACTTACGCCAGACAA
TACAacacttgaaaaaaataacacaaCACTCGCAACAGACAACGCAACGC
TTGCGATAAATAACCAAACACTTGGACAAAATGATACTACAGTTGCAGCA
AATAATACCACCATCGGTAGCCATGGCAACAACCAAAATATAACATCGGA
AACAGATGAGACAATAGAGACGACAAAAGAAAAGGAGAATGGAACTAGCa
ttgaagaaaaagaattaCTACATGCGATCTTCTGGGAAGTCAAACCGTTC
ATCTTCAAGAACTCGAAAGGAGAGATTGATGGAATCATTCCACAGATCTT
TGAGCAAGCAAGTGTCTTTTGTAACGGTCGCAAGCCTTTCATTCATTATA
AAGTGAAAATGGATTCAAGGCGTGACTTTTATGATCTGGCTCGATCAAAC
GTATCGTACCATTCAAACACATCCGTGTTAAAAAGTGTCGACAAACAGCG
GGCTTTCTGGGCCCCAGTCCTCTCCCCTACTAATACAAAGAACGACGGCT
TTCTTAAAGAGCGAGCTCTCAGATCAtttcaaatcttaaaaacaacCCAC
ATCAGTATTATCGTGAGACGGGACTTAATTTCATTACCTAACAAAATTTT
CCGTGGCATCATGGCGTGCGAACAAATTTTCGTTCTCGCAATTTTGCTAG
CGATTATTGTTGGTATTTTTCTGTGGGTCATCGAAAGATACCAAAACACC
GATTTCCCGAATTCCTTTTGCCGAGGCGCGATGACTGGTTTGTATTGGTC
GATTGTTTCCATGACGACGGTAGGTTACGGAGATATTCAGCCGTCGTCGG
CCGTGGGACGATTCGTGACGTGTTTCTGGTTGTTCATCGGAGTTATGGTA
GGTTGTGTGATGACTGCAACGGTGACGGACGTCGTGGCTGGAAACGATTT
TGATATCCAAAATAAAAAGGTAGCTGTACTCGAAAACTCTTTTGAGGAGC
GAACAGCGGAGAAGCAATATCGCACTAACGTGGTATCAGCAAAATCGTAT
GATGAAGTATTAGAAATGGTACGAAAACAAGAAGTCTTTGCCGCCATGAT
GAATTCAGACGTAGCCGCATGGTATGACGAAATCATAAGTGATGATACAG
CGGAAGTACCTTTGAGGATGGTTGCTAAGTTACCGGCCAATCTGTACGTA
CATTGCTTGTTACCAACCGATCTCCTCCATAAGATGAAGGTGATCTTCAA
ATGCATGTATTACCAGAAAGATGAAGTGTACACGTTTGCCGAGGAGTCTT
TCAAAGTGCATCATCATCCGCAGAACATCTACATCGGTTCCACAGGTGAT
CTCATGAGTGAGAATGTCTTTTGTCGCGCTATTATCGGTTTACTAGCCGG
TTTGATCATTCTCGGTTTCGGATTCGATGGTTGGAAGTATGTTCAGTTCC
GAGTGAACACCAAGAAACACGGTGCAACAAACGGGGAGAATAAAGAAATG
ACCAAGTATTATAACTCAGCACAAGCAGCTGCACTCATATAAGACAAGTT
CTCTCGTTGAGACACCTGTTAATAACATTTCCAGTTCAAAGCAGCGAGAA
GGATGAGTAATCAGAAAGGCTTATCTAAAAAGCAGCTCTTAGCAGTATTC
AATGAAAGAATAATTACACACAAACAGAAGCCCAGTCCGTTTTAAACTGG
GGATTTGACAACTCTTGATGTCTTTTGACTATTATTGACCGAAAAACGGC
TAAGCAGCGACAAAGGATAAAAAATTGATTCAGAGTAAATTAATAATGag
caaaattgttaaaattgaaCTGTATTTTGATAGGATAAGTTTGTGTATAT
TGGTTTTCAAAAAGACGAGGT Coding sequence (CDS) from alignment at scaffold_77:129465..133385+ >TCONS_00072355 ID=TCONS_00072355|Name=TCONS_00072355|organism=Clytia hemisphaerica|type=CDS|length=1590bp|location=Sequence derived from alignment at scaffold_77:129465..133385+ (Clytia hemisphaerica)
ATGAaagtaaaaatgtttttgataacAATCTTGTTCGCTGGTCTTCTCCA
CATCACAACTCTGGTCATAGCTTCAAACGAAGCACTTACGCCAGACAATA
CAacacttgaaaaaaataacacaaCACTCGCAACAGACAACGCAACGCTT
GCGATAAATAACCAAACACTTGGACAAAATGATACTACAGTTGCAGCAAA
TAATACCACCATCGGTAGCCATGGCAACAACCAAAATATAACATCGGAAA
CAGATGAGACAATAGAGACGACAAAAGAAAAGGAGAATGGAACTAGCatt
gaagaaaaagaattaCTACATGCGATCTTCTGGGAAGTCAAACCGTTCAT
CTTCAAGAACTCGAAAGGAGAGATTGATGGAATCATTCCACAGATCTTTG
AGCAAGCAAGTGTCTTTTGTAACGGTCGCAAGCCTTTCATTCATTATAAA
GTGAAAATGGATTCAAGGCGTGACTTTTATGATCTGGCTCGATCAAACGT
ATCGTACCATTCAAACACATCCGTGTTAAAAAGTGTCGACAAACAGCGGG
CTTTCTGGGCCCCAGTCCTCTCCCCTACTAATACAAAGAACGACGGCTTT
CTTAAAGAGCGAGCTCTCAGATCAtttcaaatcttaaaaacaacCCACAT
CAGTATTATCGTGAGACGGGACTTAATTTCATTACCTAACAAAATTTTCC
GTGGCATCATGGCGTGCGAACAAATTTTCGTTCTCGCAATTTTGCTAGCG
ATTATTGTTGGTATTTTTCTGTGGGTCATCGAAAGATACCAAAACACCGA
TTTCCCGAATTCCTTTTGCCGAGGCGCGATGACTGGTTTGTATTGGTCGA
TTGTTTCCATGACGACGGTAGGTTACGGAGATATTCAGCCGTCGTCGGCC
GTGGGACGATTCGTGACGTGTTTCTGGTTGTTCATCGGAGTTATGGTAGG
TTGTGTGATGACTGCAACGGTGACGGACGTCGTGGCTGGAAACGATTTTG
ATATCCAAAATAAAAAGGTAGCTGTACTCGAAAACTCTTTTGAGGAGCGA
ACAGCGGAGAAGCAATATCGCACTAACGTGGTATCAGCAAAATCGTATGA
TGAAGTATTAGAAATGGTACGAAAACAAGAAGTCTTTGCCGCCATGATGA
ATTCAGACGTAGCCGCATGGTATGACGAAATCATAAGTGATGATACAGCG
GAAGTACCTTTGAGGATGGTTGCTAAGTTACCGGCCAATCTGTACGTACA
TTGCTTGTTACCAACCGATCTCCTCCATAAGATGAAGGTGATCTTCAAAT
GCATGTATTACCAGAAAGATGAAGTGTACACGTTTGCCGAGGAGTCTTTC
AAAGTGCATCATCATCCGCAGAACATCTACATCGGTTCCACAGGTGATCT
CATGAGTGAGAATGTCTTTTGTCGCGCTATTATCGGTTTACTAGCCGGTT
TGATCATTCTCGGTTTCGGATTCGATGGTTGGAAGTATGTTCAGTTCCGA
GTGAACACCAAGAAACACGGTGCAACAAACGGGGAGAATAAAGAAATGAC
CAAGTATTATAACTCAGCACAAGCAGCTGCACTCATATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072355-exon-scaffold_77-1491911889:129465..129648 | TCONS_00072355-exon-scaffold_77-1491911889:129465..129648 | Clytia hemisphaerica | exon |
| TCONS_00072355-exon-scaffold_77-1510915933:129465..129648 | TCONS_00072355-exon-scaffold_77-1510915933:129465..129648 | Clytia hemisphaerica | exon |
| TCONS_00072355-exon-scaffold_77-1575043694:129465..129648 | TCONS_00072355-exon-scaffold_77-1575043694:129465..129648 | Clytia hemisphaerica | exon |
| TCONS_00072355-exon-scaffold_77-1491911889:131435..133385 | TCONS_00072355-exon-scaffold_77-1491911889:131435..133385 | Clytia hemisphaerica | exon |
| TCONS_00072355-exon-scaffold_77-1510915933:131435..133385 | TCONS_00072355-exon-scaffold_77-1510915933:131435..133385 | Clytia hemisphaerica | exon |
| TCONS_00072355-exon-scaffold_77-1575043694:131435..133385 | TCONS_00072355-exon-scaffold_77-1575043694:131435..133385 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_77 | supercontig | scaffold_77:129465..133385 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR013099 | K_chnl_dom |
Blast
The following BLAST results are available for this feature:
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