TCONS_00072343 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072343
Unique NameTCONS_00072343
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3303

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072343 ID=TCONS_00072343|Name=TCONS_00072343|organism=Clytia hemisphaerica|type=transcript|length=3303bp
gtttaaaatgtgttttctgactgatgtaaccaacaaaactatagcatgtt
atacattttctgttagacaaactattcctgaatctgaaaattcaaaaatt
gcattgaaaaagtttgatgaagaagaaaatgaagNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNtagcttagtttcggcgaagaaaaaaca
ttttgaaaaaattttcgcagtagatggtgtatcttttaccgaacaataaa
aatttttgcggaaaatttttgtaaatgcctctttgtctcgaaatcttcaa
aatagtgctttttcaataatttttcatctggattttgcttaaaaaaacag
tcataacttttgacacatctttttagaatgattttccgcaaaatttagaa
tagttcaattctttgcggacagtttgaaaaatgttcgaaacaaaaaggtt
aattacccattaaaacttagcactttttataaaagaaggtgatgcaacat
attattaacgtctttttaaagttcataacgtcatttttgcaattaaattc
ttaattactcttaagggatttgattaaaaagcaatttataaaggcaattc
tttgcagttctttgttaaaagtgttaaagaatcgaAAActtaacttttat
gttcagatactaaaatcaattttctgactatggtcagagcccttaagtgt
cCATCTGTCCTCTTTTAGAAAGGTtctaacgtttttattggcacgcgcag
aaaagaaaaaaataattaggtgaagagaaattttttattttgctttgcaa
aaaagtggcaAAAAAGCCCCCCGGTGGCGCGGGCCCTGCGCCACAGGAGG
AAGAAACCCAAAATAAGCTAACAAAATGAGCAATAAtgaataataaatta
aaaaaaaaactatttaccAATTTATAaagtcaattttgttttgaataacg
tGCGATATCGTGCCTAAAATATGATCATCGTGCCTCAAATTATGAAGATC
AAATCATAAGTTATCATTGCAAGATCTTGAAACATTACCCACGTGATCAT
AAGTTGTCGATCTAAGGGAATTGGCAGGGATGTACACAAGATCAGAATTA
AAATAAAAGATCTGAAAGTGATTTCTAGTATgtggtcaaaaattgaattt
ggcgaattttggcaaaaattgttAAATCAAATCTCTGCCGGAAAGCTcat
tttggccaatcgccaaattaaatccacaaCAAAATTAATCCTTCTTAAGG
TATATTACAAAAACAAGTCCATATAATCCGACCGCTAACCGTCAGCAAGT
GTTATTGTCTCTTTTTCTCGAAATTCTGAATATAGTAATATCGTTTCCGC
GTGAAATACCATACAAATATAACTAATACAGCACTGTGCAGCCAGGTGAT
GTAAAATTGATACGAGTACGCGTAACTGGCCGTTAGGAAACATATGAAGG
TGAAAATGCCGCCAGAAGCTTTTCTATACGATTCAATAATACTGGCGGAA
TGGCTGGGTGTTATTGAAAATAAGATTAAACGCCCATAACAGGTCCTGGC
GAATGTCGTTATACTATTTAAAAGAACTATCATCGATATAACCataattt
gtattggaaaattCTCAATAGTCAGTTCTTTGATTAAATTCAAACAGGCA
TAAACAACCATCATTAGAACGTATGTCATTATAAACATAAAATGAACATC
AACCGAATTACTAAGAAATCTTTTCCGTATGTACGCAAGTAAGAGAGTAG
ATGTAAAAACTCCTATAACTGTCGCGAATGCCAGTTTTGACATAGTAAAG
TTGAAATGATATAACGATATCATATTGATAAGAACTTCAGCTTGGAAATA
TTGCCCCATTAGAATGGCAGATGAAAACAAGACCAAGAAAACATCAGCcc
tttttaaaacgtttttcaaaGTCCATAGCTTATGGGTGATCAATATATCA
TCAGATATATTTTCTAAGTCCTTTTGTTTTTCCTCATCTNTACCCACGTG
ATCATAAGTTGTCGATCTAAGGGAATTGGCAGGGATGTACACAAGATCAG
AATCAAAATAAAAGATCTGAAAGTGATTTCTAGTATgtggtcaaaaattg
aatttggcgaattttggcgaAAATTGTTAAATCAAATCTCTGCCGGAAAG
CTcattttggccaatcgccaaattaaatccacaaCAAAATTAATCCTTCT
TAAGGTATATTACAAAAACAAGTCCATATAATCCGACCGCTAACCGTCAG
CAAGTGTTATTGTCTCTTTTTCTCGAAATTCTGAATATAGTAATATCGTT
TCCGCGTGAAATACCATACAAATATAACTAATACAGCACTGTGCAGCCAG
GTGATGTAAAATTGATACGAGTACGCGTAACTGGCCGTTAGGAAACATAT
GAAGGTGAAAATGCCGCCAGAAGCTTTTCTATACGATTCAATAATACTGG
CGGAATGGCTGGGTGTTATTGAAAATAAGATTAAACGCCCATAACAGGTC
CTGGCGAATGTCGTTATACTATTTAAAAGAACTATCATCGATATAACCat
aatttgtattggaaaattCTCAATAGTCAGTTCTTTGATTAAATTCAAAC
AGGCATAAACAACCATCATTAGAACGTATGTCATTATAAACATAAAATGA
ACATCAACCGAATTACTAAGAAATCTTTTCCGTATGTACGCAAGTAAGAG
AGTAGATGTAAAAACTCCTATAACTGTCGCGAATGCCAGTTTTGACATAG
TAAAGTTGAAATGATATAACGATATCATATTGATAAGAACTTCAGCTTGG
AAATATTGCCCCATTAGAATGGCAGATGAAAACAAGACCAAGAAAACATC
AGCcctttttaaaacgtttttcaaaGTCCATAGCTTATGGGTGATCAATA
TATCATCAGATATATTTTCTAAGTCCTTTTGTTTTTCCTCATCTTTCGCA
AATGTAACATTCTCGTGAGCTTTTTCCAGTATTTCACATTTTATTTGTTG
ATAAATTGGGTCCAACGTCAGGTTTGATATACAAAAACAAGCTGCTATCC
ACATTAGAATAAATGATATAGCCAGGAACAACCCAACAAAGTTGTTTTGG
TTAATAATCCATGTGTTATGGATTATCTCGAATTTGATACCAAGGAAGAG
GAGAGGAGTGCACGGTGCCAGAGATAAACATACGGCACCGACAATTTGCC
ACATCGAGAAGATTTTGCCAAGCTCTTCACGATTGTATATTCTGGAAATT
TCACCTAAGATGAATAAAATCCTTTTTATGCTTTAAATGTCTTTCGATTA
TCA
Run BLAST on NCBI

protein sequence of TCONS_00072343-protein

>TCONS_00072343-protein ID=TCONS_00072343-protein|Name=TCONS_00072343-protein|organism=Clytia hemisphaerica|type=polypeptide|length=315bp
MWQIVGAVCLSLAPCTPLLFLGIKFEIIHNTWIINQNNFVGLFLAISFIL
MWIAACFCISNLTLDPIYQQIKCEILEKAHENVTFAKDEEKQKDLENISD
DILITHKLWTLKNVLKRADVFLVLFSSAILMGQYFQAEVLINMISLYHFN
FTMSKLAFATVIGVFTSTLLLAYIRKRFLSNSVDVHFMFIMTYVLMMVVY
ACLNLIKELTIENFPIQIMVISMIVLLNSITTFARTCYGRLILFSITPSH
SASIIESYRKASGGIFTFICFLTASYAYSYQFYITWLHSAVLVIFVWYFT
RKRYYYIQNFEKKRQ
Run BLAST on NCBI

transcript from alignment at scaffold_76:177867..181169

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072343 ID=TCONS_00072343|Name=TCONS_00072343|organism=Clytia hemisphaerica|type=transcript|length=3303bp|location=Sequence derived from alignment at scaffold_76:177867..181169 (Clytia hemisphaerica)
TGATAATCGAAAGACATTTAAAGCATAAAAAGGATTTTATTCATCTTAGG TGAAATTTCCAGAATATACAATCGTGAAGAGCTTGGCAAAATCTTCTCGA TGTGGCAAATTGTCGGTGCCGTATGTTTATCTCTGGCACCGTGCACTCCT CTCCTCTTCCTTGGTATCAAATTCGAGATAATCCATAACACATGGATTAT TAACCAAAACAACTTTGTTGGGTTGTTCCTGGCTATATCATTTATTCTAA TGTGGATAGCAGCTTGTTTTTGTATATCAAACCTGACGTTGGACCCAATT TATCAACAAATAAAATGTGAAATACTGGAAAAAGCTCACGAGAATGTTAC ATTTGCGAAAGATGAGGAAAAACAAAAGGACTTAGAAAATATATCTGATG ATATATTGATCACCCATAAGCTATGGACtttgaaaaacgttttaaaaagg GCTGATGTTTTCTTGGTCTTGTTTTCATCTGCCATTCTAATGGGGCAATA TTTCCAAGCTGAAGTTCTTATCAATATGATATCGTTATATCATTTCAACT TTACTATGTCAAAACTGGCATTCGCGACAGTTATAGGAGTTTTTACATCT ACTCTCTTACTTGCGTACATACGGAAAAGATTTCTTAGTAATTCGGTTGA TGTTCATTTTATGTTTATAATGACATACGTTCTAATGATGGTTGTTTATG CCTGTTTGAATTTAATCAAAGAACTGACTATTGAGaattttccaatacaa attatGGTTATATCGATGATAGTTCTTTTAAATAGTATAACGACATTCGC CAGGACCTGTTATGGGCGTTTAATCTTATTTTCAATAACACCCAGCCATT CCGCCAGTATTATTGAATCGTATAGAAAAGCTTCTGGCGGCATTTTCACC TTCATATGTTTCCTAACGGCCAGTTACGCGTACTCGTATCAATTTTACAT CACCTGGCTGCACAGTGCTGTATTAGTTATATTTGTATGGTATTTCACGC GGAAACGATATTACTATATTCAGAATTTCGAGAAAAAGAGACAATAACAC TTGCTGACGGTTAGCGGTCGGATTATATGGACTTGTTTTTGTAATATACC TTAAGAAGGATTAATTTTGttgtggatttaatttggcgattggccaaaat gAGCTTTCCGGCAGAGATTTGATTTAACAATTTtcgccaaaattcgccaa attcaatttttgaccacATACTAGAAATCACTTTCAGATCTTTTATTTTG ATTCTGATCTTGTGTACATCCCTGCCAATTCCCTTAGATCGACAACTTAT GATCACGTGGGTANAGATGAGGAAAAACAAAAGGACTTAGAAAATATATC TGATGATATATTGATCACCCATAAGCTATGGACtttgaaaaacgttttaa aaaggGCTGATGTTTTCTTGGTCTTGTTTTCATCTGCCATTCTAATGGGG CAATATTTCCAAGCTGAAGTTCTTATCAATATGATATCGTTATATCATTT CAACTTTACTATGTCAAAACTGGCATTCGCGACAGTTATAGGAGTTTTTA CATCTACTCTCTTACTTGCGTACATACGGAAAAGATTTCTTAGTAATTCG GTTGATGTTCATTTTATGTTTATAATGACATACGTTCTAATGATGGTTGT TTATGCCTGTTTGAATTTAATCAAAGAACTGACTATTGAGaattttccaa tacaaattatGGTTATATCGATGATAGTTCTTTTAAATAGTATAACGACA TTCGCCAGGACCTGTTATGGGCGTTTAATCTTATTTTCAATAACACCCAG CCATTCCGCCAGTATTATTGAATCGTATAGAAAAGCTTCTGGCGGCATTT TCACCTTCATATGTTTCCTAACGGCCAGTTACGCGTACTCGTATCAATTT TACATCACCTGGCTGCACAGTGCTGTATTAGTTATATTTGTATGGTATTT CACGCGGAAACGATATTACTATATTCAGAATTTCGAGAAAAAGAGACAAT AACACTTGCTGACGGTTAGCGGTCGGATTATATGGACTTGTTTTTGTAAT ATACCTTAAGAAGGATTAATTTTGttgtggatttaatttggcgattggcc aaaatgAGCTTTCCGGCAGAGATTTGATTTaacaatttttgccaaaattc gccaaattcaatttttgaccacATACTAGAAATCACTTTCAGATCTTTTA TTTTAATTCTGATCTTGTGTACATCCCTGCCAATTCCCTTAGATCGACAA CTTATGATCACGTGGGTAATGTTTCAAGATCTTGCAATGATAACTTATGA TTTGATCTTCATAATTTGAGGCACGATGATCATATTTTAGGCACGATATC GCacgttattcaaaacaaaattgacttTATAAATTggtaaatagtttttt ttttaatttattattcaTTATTGCTCATTTTGTTAGCTTATTTTGGGTTT CTTCCTCCTGTGGCGCAGGGCCCGCGCCACCGGGGGGCTTTTTtgccact tttttgcaaagcaaaataaaaaatttctcttcacctaattatttttttct tttctgcgcgtgccaataaaaacgttagaACCTTTCTAAAAGAGGACAGA TGgacacttaagggctctgaccatagtcagaaaattgattttagtatctg aacataaaagttaagTTTtcgattctttaacacttttaacaaagaactgc aaagaattgcctttataaattgctttttaatcaaatcccttaagagtaat taagaatttaattgcaaaaatgacgttatgaactttaaaaagacgttaat aatatgttgcatcaccttcttttataaaaagtgctaagttttaatgggta attaacctttttgtttcgaacatttttcaaactgtccgcaaagaattgaa ctattctaaattttgcggaaaatcattctaaaaagatgtgtcaaaagtta tgactgtttttttaagcaaaatccagatgaaaaattattgaaaaagcact attttgaagatttcgagacaaagaggcatttacaaaaattttccgcaaaa atttttattgttcggtaaaagatacaccatctactgcgaaaattttttca aaatgttttttcttcgccgaaactaagctaNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNcttcattttcttcttcatcaaactttttcaa tgcaatttttgaattttcagattcaggaatagtttgtctaacagaaaatg tataacatgctatagttttgttggttacatcagtcagaaaacacatttta aac

Coding sequence (CDS) from alignment at scaffold_76:177867..181169

>TCONS_00072343 ID=TCONS_00072343|Name=TCONS_00072343|organism=Clytia hemisphaerica|type=CDS|length=948bp|location=Sequence derived from alignment at scaffold_76:177867..181169 (Clytia hemisphaerica)
ATGTGGCAAATTGTCGGTGCCGTATGTTTATCTCTGGCACCGTGCACTCC
TCTCCTCTTCCTTGGTATCAAATTCGAGATAATCCATAACACATGGATTA
TTAACCAAAACAACTTTGTTGGGTTGTTCCTGGCTATATCATTTATTCTA
ATGTGGATAGCAGCTTGTTTTTGTATATCAAACCTGACGTTGGACCCAAT
TTATCAACAAATAAAATGTGAAATACTGGAAAAAGCTCACGAGAATGTTA
CATTTGCGAAAGATGAGGAAAAACAAAAGGACTTAGAAAATATATCTGAT
GATATATTGATCACCCATAAGCTATGGACtttgaaaaacgttttaaaaag
gGCTGATGTTTTCTTGGTCTTGTTTTCATCTGCCATTCTAATGGGGCAAT
ATTTCCAAGCTGAAGTTCTTATCAATATGATATCGTTATATCATTTCAAC
TTTACTATGTCAAAACTGGCATTCGCGACAGTTATAGGAGTTTTTACATC
TACTCTCTTACTTGCGTACATACGGAAAAGATTTCTTAGTAATTCGGTTG
ATGTTCATTTTATGTTTATAATGACATACGTTCTAATGATGGTTGTTTAT
GCCTGTTTGAATTTAATCAAAGAACTGACTATTGAGaattttccaataca
aattatGGTTATATCGATGATAGTTCTTTTAAATAGTATAACGACATTCG
CCAGGACCTGTTATGGGCGTTTAATCTTATTTTCAATAACACCCAGCCAT
TCCGCCAGTATTATTGAATCGTATAGAAAAGCTTCTGGCGGCATTTTCAC
CTTCATATGTTTCCTAACGGCCAGTTACGCGTACTCGTATCAATTTTACA
TCACCTGGCTGCACAGTGCTGTATTAGTTATATTTGTATGGTATTTCACG
CGGAAACGATATTACTATATTCAGAATTTCGAGAAAAAGAGACAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044923XLOC_044923Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072343-proteinTCONS_00072343-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072343-exon-scaffold_76-1491911889:177867..181169TCONS_00072343-exon-scaffold_76-1491911889:177867..181169Clytia hemisphaericaexon
TCONS_00072343-exon-scaffold_76-1510915933:177867..181169TCONS_00072343-exon-scaffold_76-1510915933:177867..181169Clytia hemisphaericaexon
TCONS_00072343-exon-scaffold_76-1575043694:177867..181169TCONS_00072343-exon-scaffold_76-1575043694:177867..181169Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_76supercontigscaffold_76:177867..181169 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.44653 6.09985 2.43009 1.40677 0.59046 0.322543 4.48246 4.82026 1.87636 2.35542 1.04619 1.22913 3.3052 3.0839 2.48385 3.05065 2.03217 1.69448 3.03596 2.60926 1.7539 1.95184 4.04448 3.1612 0.603727 0.528772 4.75254 4.01507 1.9076 1.63747
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR020846MFS_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072343 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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