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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072343 ID=TCONS_00072343|Name=TCONS_00072343|organism=Clytia hemisphaerica|type=transcript|length=3303bp
gtttaaaatgtgttttctgactgatgtaaccaacaaaactatagcatgtt
atacattttctgttagacaaactattcctgaatctgaaaattcaaaaatt
gcattgaaaaagtttgatgaagaagaaaatgaagNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNtagcttagtttcggcgaagaaaaaaca
ttttgaaaaaattttcgcagtagatggtgtatcttttaccgaacaataaa
aatttttgcggaaaatttttgtaaatgcctctttgtctcgaaatcttcaa
aatagtgctttttcaataatttttcatctggattttgcttaaaaaaacag
tcataacttttgacacatctttttagaatgattttccgcaaaatttagaa
tagttcaattctttgcggacagtttgaaaaatgttcgaaacaaaaaggtt
aattacccattaaaacttagcactttttataaaagaaggtgatgcaacat
attattaacgtctttttaaagttcataacgtcatttttgcaattaaattc
ttaattactcttaagggatttgattaaaaagcaatttataaaggcaattc
tttgcagttctttgttaaaagtgttaaagaatcgaAAActtaacttttat
gttcagatactaaaatcaattttctgactatggtcagagcccttaagtgt
cCATCTGTCCTCTTTTAGAAAGGTtctaacgtttttattggcacgcgcag
aaaagaaaaaaataattaggtgaagagaaattttttattttgctttgcaa
aaaagtggcaAAAAAGCCCCCCGGTGGCGCGGGCCCTGCGCCACAGGAGG
AAGAAACCCAAAATAAGCTAACAAAATGAGCAATAAtgaataataaatta
aaaaaaaaactatttaccAATTTATAaagtcaattttgttttgaataacg
tGCGATATCGTGCCTAAAATATGATCATCGTGCCTCAAATTATGAAGATC
AAATCATAAGTTATCATTGCAAGATCTTGAAACATTACCCACGTGATCAT
AAGTTGTCGATCTAAGGGAATTGGCAGGGATGTACACAAGATCAGAATTA
AAATAAAAGATCTGAAAGTGATTTCTAGTATgtggtcaaaaattgaattt
ggcgaattttggcaaaaattgttAAATCAAATCTCTGCCGGAAAGCTcat
tttggccaatcgccaaattaaatccacaaCAAAATTAATCCTTCTTAAGG
TATATTACAAAAACAAGTCCATATAATCCGACCGCTAACCGTCAGCAAGT
GTTATTGTCTCTTTTTCTCGAAATTCTGAATATAGTAATATCGTTTCCGC
GTGAAATACCATACAAATATAACTAATACAGCACTGTGCAGCCAGGTGAT
GTAAAATTGATACGAGTACGCGTAACTGGCCGTTAGGAAACATATGAAGG
TGAAAATGCCGCCAGAAGCTTTTCTATACGATTCAATAATACTGGCGGAA
TGGCTGGGTGTTATTGAAAATAAGATTAAACGCCCATAACAGGTCCTGGC
GAATGTCGTTATACTATTTAAAAGAACTATCATCGATATAACCataattt
gtattggaaaattCTCAATAGTCAGTTCTTTGATTAAATTCAAACAGGCA
TAAACAACCATCATTAGAACGTATGTCATTATAAACATAAAATGAACATC
AACCGAATTACTAAGAAATCTTTTCCGTATGTACGCAAGTAAGAGAGTAG
ATGTAAAAACTCCTATAACTGTCGCGAATGCCAGTTTTGACATAGTAAAG
TTGAAATGATATAACGATATCATATTGATAAGAACTTCAGCTTGGAAATA
TTGCCCCATTAGAATGGCAGATGAAAACAAGACCAAGAAAACATCAGCcc
tttttaaaacgtttttcaaaGTCCATAGCTTATGGGTGATCAATATATCA
TCAGATATATTTTCTAAGTCCTTTTGTTTTTCCTCATCTNTACCCACGTG
ATCATAAGTTGTCGATCTAAGGGAATTGGCAGGGATGTACACAAGATCAG
AATCAAAATAAAAGATCTGAAAGTGATTTCTAGTATgtggtcaaaaattg
aatttggcgaattttggcgaAAATTGTTAAATCAAATCTCTGCCGGAAAG
CTcattttggccaatcgccaaattaaatccacaaCAAAATTAATCCTTCT
TAAGGTATATTACAAAAACAAGTCCATATAATCCGACCGCTAACCGTCAG
CAAGTGTTATTGTCTCTTTTTCTCGAAATTCTGAATATAGTAATATCGTT
TCCGCGTGAAATACCATACAAATATAACTAATACAGCACTGTGCAGCCAG
GTGATGTAAAATTGATACGAGTACGCGTAACTGGCCGTTAGGAAACATAT
GAAGGTGAAAATGCCGCCAGAAGCTTTTCTATACGATTCAATAATACTGG
CGGAATGGCTGGGTGTTATTGAAAATAAGATTAAACGCCCATAACAGGTC
CTGGCGAATGTCGTTATACTATTTAAAAGAACTATCATCGATATAACCat
aatttgtattggaaaattCTCAATAGTCAGTTCTTTGATTAAATTCAAAC
AGGCATAAACAACCATCATTAGAACGTATGTCATTATAAACATAAAATGA
ACATCAACCGAATTACTAAGAAATCTTTTCCGTATGTACGCAAGTAAGAG
AGTAGATGTAAAAACTCCTATAACTGTCGCGAATGCCAGTTTTGACATAG
TAAAGTTGAAATGATATAACGATATCATATTGATAAGAACTTCAGCTTGG
AAATATTGCCCCATTAGAATGGCAGATGAAAACAAGACCAAGAAAACATC
AGCcctttttaaaacgtttttcaaaGTCCATAGCTTATGGGTGATCAATA
TATCATCAGATATATTTTCTAAGTCCTTTTGTTTTTCCTCATCTTTCGCA
AATGTAACATTCTCGTGAGCTTTTTCCAGTATTTCACATTTTATTTGTTG
ATAAATTGGGTCCAACGTCAGGTTTGATATACAAAAACAAGCTGCTATCC
ACATTAGAATAAATGATATAGCCAGGAACAACCCAACAAAGTTGTTTTGG
TTAATAATCCATGTGTTATGGATTATCTCGAATTTGATACCAAGGAAGAG
GAGAGGAGTGCACGGTGCCAGAGATAAACATACGGCACCGACAATTTGCC
ACATCGAGAAGATTTTGCCAAGCTCTTCACGATTGTATATTCTGGAAATT
TCACCTAAGATGAATAAAATCCTTTTTATGCTTTAAATGTCTTTCGATTA
TCA Run BLAST on NCBI protein sequence of TCONS_00072343-protein >TCONS_00072343-protein ID=TCONS_00072343-protein|Name=TCONS_00072343-protein|organism=Clytia hemisphaerica|type=polypeptide|length=315bp
MWQIVGAVCLSLAPCTPLLFLGIKFEIIHNTWIINQNNFVGLFLAISFIL
MWIAACFCISNLTLDPIYQQIKCEILEKAHENVTFAKDEEKQKDLENISD
DILITHKLWTLKNVLKRADVFLVLFSSAILMGQYFQAEVLINMISLYHFN
FTMSKLAFATVIGVFTSTLLLAYIRKRFLSNSVDVHFMFIMTYVLMMVVY
ACLNLIKELTIENFPIQIMVISMIVLLNSITTFARTCYGRLILFSITPSH
SASIIESYRKASGGIFTFICFLTASYAYSYQFYITWLHSAVLVIFVWYFT
RKRYYYIQNFEKKRQ Run BLAST on NCBI transcript from alignment at scaffold_76:177867..181169 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072343 ID=TCONS_00072343|Name=TCONS_00072343|organism=Clytia hemisphaerica|type=transcript|length=3303bp|location=Sequence derived from alignment at scaffold_76:177867..181169 (Clytia hemisphaerica)
TGATAATCGAAAGACATTTAAAGCATAAAAAGGATTTTATTCATCTTAGG
TGAAATTTCCAGAATATACAATCGTGAAGAGCTTGGCAAAATCTTCTCGA
TGTGGCAAATTGTCGGTGCCGTATGTTTATCTCTGGCACCGTGCACTCCT
CTCCTCTTCCTTGGTATCAAATTCGAGATAATCCATAACACATGGATTAT
TAACCAAAACAACTTTGTTGGGTTGTTCCTGGCTATATCATTTATTCTAA
TGTGGATAGCAGCTTGTTTTTGTATATCAAACCTGACGTTGGACCCAATT
TATCAACAAATAAAATGTGAAATACTGGAAAAAGCTCACGAGAATGTTAC
ATTTGCGAAAGATGAGGAAAAACAAAAGGACTTAGAAAATATATCTGATG
ATATATTGATCACCCATAAGCTATGGACtttgaaaaacgttttaaaaagg
GCTGATGTTTTCTTGGTCTTGTTTTCATCTGCCATTCTAATGGGGCAATA
TTTCCAAGCTGAAGTTCTTATCAATATGATATCGTTATATCATTTCAACT
TTACTATGTCAAAACTGGCATTCGCGACAGTTATAGGAGTTTTTACATCT
ACTCTCTTACTTGCGTACATACGGAAAAGATTTCTTAGTAATTCGGTTGA
TGTTCATTTTATGTTTATAATGACATACGTTCTAATGATGGTTGTTTATG
CCTGTTTGAATTTAATCAAAGAACTGACTATTGAGaattttccaatacaa
attatGGTTATATCGATGATAGTTCTTTTAAATAGTATAACGACATTCGC
CAGGACCTGTTATGGGCGTTTAATCTTATTTTCAATAACACCCAGCCATT
CCGCCAGTATTATTGAATCGTATAGAAAAGCTTCTGGCGGCATTTTCACC
TTCATATGTTTCCTAACGGCCAGTTACGCGTACTCGTATCAATTTTACAT
CACCTGGCTGCACAGTGCTGTATTAGTTATATTTGTATGGTATTTCACGC
GGAAACGATATTACTATATTCAGAATTTCGAGAAAAAGAGACAATAACAC
TTGCTGACGGTTAGCGGTCGGATTATATGGACTTGTTTTTGTAATATACC
TTAAGAAGGATTAATTTTGttgtggatttaatttggcgattggccaaaat
gAGCTTTCCGGCAGAGATTTGATTTAACAATTTtcgccaaaattcgccaa
attcaatttttgaccacATACTAGAAATCACTTTCAGATCTTTTATTTTG
ATTCTGATCTTGTGTACATCCCTGCCAATTCCCTTAGATCGACAACTTAT
GATCACGTGGGTANAGATGAGGAAAAACAAAAGGACTTAGAAAATATATC
TGATGATATATTGATCACCCATAAGCTATGGACtttgaaaaacgttttaa
aaaggGCTGATGTTTTCTTGGTCTTGTTTTCATCTGCCATTCTAATGGGG
CAATATTTCCAAGCTGAAGTTCTTATCAATATGATATCGTTATATCATTT
CAACTTTACTATGTCAAAACTGGCATTCGCGACAGTTATAGGAGTTTTTA
CATCTACTCTCTTACTTGCGTACATACGGAAAAGATTTCTTAGTAATTCG
GTTGATGTTCATTTTATGTTTATAATGACATACGTTCTAATGATGGTTGT
TTATGCCTGTTTGAATTTAATCAAAGAACTGACTATTGAGaattttccaa
tacaaattatGGTTATATCGATGATAGTTCTTTTAAATAGTATAACGACA
TTCGCCAGGACCTGTTATGGGCGTTTAATCTTATTTTCAATAACACCCAG
CCATTCCGCCAGTATTATTGAATCGTATAGAAAAGCTTCTGGCGGCATTT
TCACCTTCATATGTTTCCTAACGGCCAGTTACGCGTACTCGTATCAATTT
TACATCACCTGGCTGCACAGTGCTGTATTAGTTATATTTGTATGGTATTT
CACGCGGAAACGATATTACTATATTCAGAATTTCGAGAAAAAGAGACAAT
AACACTTGCTGACGGTTAGCGGTCGGATTATATGGACTTGTTTTTGTAAT
ATACCTTAAGAAGGATTAATTTTGttgtggatttaatttggcgattggcc
aaaatgAGCTTTCCGGCAGAGATTTGATTTaacaatttttgccaaaattc
gccaaattcaatttttgaccacATACTAGAAATCACTTTCAGATCTTTTA
TTTTAATTCTGATCTTGTGTACATCCCTGCCAATTCCCTTAGATCGACAA
CTTATGATCACGTGGGTAATGTTTCAAGATCTTGCAATGATAACTTATGA
TTTGATCTTCATAATTTGAGGCACGATGATCATATTTTAGGCACGATATC
GCacgttattcaaaacaaaattgacttTATAAATTggtaaatagtttttt
ttttaatttattattcaTTATTGCTCATTTTGTTAGCTTATTTTGGGTTT
CTTCCTCCTGTGGCGCAGGGCCCGCGCCACCGGGGGGCTTTTTtgccact
tttttgcaaagcaaaataaaaaatttctcttcacctaattatttttttct
tttctgcgcgtgccaataaaaacgttagaACCTTTCTAAAAGAGGACAGA
TGgacacttaagggctctgaccatagtcagaaaattgattttagtatctg
aacataaaagttaagTTTtcgattctttaacacttttaacaaagaactgc
aaagaattgcctttataaattgctttttaatcaaatcccttaagagtaat
taagaatttaattgcaaaaatgacgttatgaactttaaaaagacgttaat
aatatgttgcatcaccttcttttataaaaagtgctaagttttaatgggta
attaacctttttgtttcgaacatttttcaaactgtccgcaaagaattgaa
ctattctaaattttgcggaaaatcattctaaaaagatgtgtcaaaagtta
tgactgtttttttaagcaaaatccagatgaaaaattattgaaaaagcact
attttgaagatttcgagacaaagaggcatttacaaaaattttccgcaaaa
atttttattgttcggtaaaagatacaccatctactgcgaaaattttttca
aaatgttttttcttcgccgaaactaagctaNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNcttcattttcttcttcatcaaactttttcaa
tgcaatttttgaattttcagattcaggaatagtttgtctaacagaaaatg
tataacatgctatagttttgttggttacatcagtcagaaaacacatttta
aac Coding sequence (CDS) from alignment at scaffold_76:177867..181169 >TCONS_00072343 ID=TCONS_00072343|Name=TCONS_00072343|organism=Clytia hemisphaerica|type=CDS|length=948bp|location=Sequence derived from alignment at scaffold_76:177867..181169 (Clytia hemisphaerica)
ATGTGGCAAATTGTCGGTGCCGTATGTTTATCTCTGGCACCGTGCACTCC
TCTCCTCTTCCTTGGTATCAAATTCGAGATAATCCATAACACATGGATTA
TTAACCAAAACAACTTTGTTGGGTTGTTCCTGGCTATATCATTTATTCTA
ATGTGGATAGCAGCTTGTTTTTGTATATCAAACCTGACGTTGGACCCAAT
TTATCAACAAATAAAATGTGAAATACTGGAAAAAGCTCACGAGAATGTTA
CATTTGCGAAAGATGAGGAAAAACAAAAGGACTTAGAAAATATATCTGAT
GATATATTGATCACCCATAAGCTATGGACtttgaaaaacgttttaaaaag
gGCTGATGTTTTCTTGGTCTTGTTTTCATCTGCCATTCTAATGGGGCAAT
ATTTCCAAGCTGAAGTTCTTATCAATATGATATCGTTATATCATTTCAAC
TTTACTATGTCAAAACTGGCATTCGCGACAGTTATAGGAGTTTTTACATC
TACTCTCTTACTTGCGTACATACGGAAAAGATTTCTTAGTAATTCGGTTG
ATGTTCATTTTATGTTTATAATGACATACGTTCTAATGATGGTTGTTTAT
GCCTGTTTGAATTTAATCAAAGAACTGACTATTGAGaattttccaataca
aattatGGTTATATCGATGATAGTTCTTTTAAATAGTATAACGACATTCG
CCAGGACCTGTTATGGGCGTTTAATCTTATTTTCAATAACACCCAGCCAT
TCCGCCAGTATTATTGAATCGTATAGAAAAGCTTCTGGCGGCATTTTCAC
CTTCATATGTTTCCTAACGGCCAGTTACGCGTACTCGTATCAATTTTACA
TCACCTGGCTGCACAGTGCTGTATTAGTTATATTTGTATGGTATTTCACG
CGGAAACGATATTACTATATTCAGAATTTCGAGAAAAAGAGACAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00072343-exon-scaffold_76-1491911889:177867..181169 | TCONS_00072343-exon-scaffold_76-1491911889:177867..181169 | Clytia hemisphaerica | exon |
| TCONS_00072343-exon-scaffold_76-1510915933:177867..181169 | TCONS_00072343-exon-scaffold_76-1510915933:177867..181169 | Clytia hemisphaerica | exon |
| TCONS_00072343-exon-scaffold_76-1575043694:177867..181169 | TCONS_00072343-exon-scaffold_76-1575043694:177867..181169 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_76 | supercontig | scaffold_76:177867..181169 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR020846 | MFS_dom |
Blast
The following BLAST results are available for this feature:
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