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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072327 ID=TCONS_00072327|Name=TCONS_00072327|organism=Clytia hemisphaerica|type=transcript|length=1947bp
TATGGCCAATATGGTAGTTTCACAAGCTGAATATGTTCGAATTTGCTACT
ACACGAATTGGTCACAATATCGTCCAGGAAAAGCCAAGTTTTCACCATCA
CACATCGATCCTTTTCTTTGCACACATATCGTCTATGCTTTTGCAAAGAT
CGTCGAACATCGTTTGGAACCTTATGAATGGAATGATGATGAATATGCAA
ATTATTACAAACAAATCATTAATTTAAAGAACAAAAATCCAGCATTGAAG
ATTCTACTTGCTGTTGGTGGATGGAATCACGAATCTCAAGGAAGTCCTTT
CTCCGAAATGGTAAAGACACGCTCAAACAGACAAGGATTCATTCAACAAA
GTATCCGGTTCCTCAGACAACGAGGTTTCGATGGATTGGATTTAGATTGG
GAATATCCAGCCAGTAGAACATCTCCATTATCGGACAAACAAAGATTCAC
AGTCCTTTGCAAAGAACTTCAACAAGCCTTCGACCAAGAAGCTCGATCTT
CTGGCAAAGAAAGATTAATGCTGACAGCAGCCGTAGCAGCAGGAAAGGCA
ACCATCCAAAGAGCTTACGAAGTTTCAAAACTCGGCCAATCTTTGGATAT
GTTGCATTTGATGAGTTACGACCTTGCAGGAGCTTGGGATGGTAAAACTG
GTCACCACACATCAATGGATGCTAACAGGAAATGGTCCGTTCCCGTTGGA
TTAGATACATGGATTAACGGTGGATTTCCAGCTAATAAGATTGCGTTGGG
TTTGGGAACATACGGCAGATCATTCACATTGACTTCAAAGTCCAATTCAA
AGATGGGAGAAAAATGTAAAGGAGCTGGAGCAAGTGGTCCTTCCACCAGA
GAAAGTGGATTTCTCTCTTATTACGAAATTTGCGACAAAATTAAATCTGG
AATGAAAGTAGTTCAACATCCTAAAGCAATGGCACCATATGGTCACAAAG
ACAATTATTGGGTTGGTTATGATgacattgaaagtttgagataTAAAGTC
AAGAAACTGATCAAAGGACGCGGATTAAAAGGAGCCATGTTTTGGTCACT
TgatttggatgacttttctggaGCTCATTGTAACCAAGGAAAATTCCCTT
TGCTGAATGCTGTAAAGAAAGAACTTGGTGCACAAGGAACAGTTACTTCA
ATCATCTCCAAATCAGCTCACATCAAAACCAAACCAAAGATTGGCGAGAA
GTTATTGAAGAGCACCCGAACAACCACCACAACAACAAAAGCACCAATGA
AATCAGCATCAAACAAAAAACGATGTTTTGCAGCCAACGTGTGGCTTGGT
CATGCTGCAATGGATCAATGGTGCATTCGAAACTGTGCCGACGGAAACTG
TGATCCTCGCTTTTGTTCCTGTGAAGAAACATCAATGAAATTATctacga
caacgaccactcaaccgacaacaacgaccactcaaccgacaacaacgacc
actccatatacaacaacgaccaccaaGCCTACGACAATGGCCATCCGACA
AACCACTACTACCATCAGGCCAACAACTACCACAAAACCCAAAAAAATGA
TAATTCGACCAATAACAACAACCACTCCACAAACAACAGCTACTGTCCAA
TCATCAATTATGACGACTCAACCAACAGCAACGGCCGTTCAACAAAGCAT
GAAGAAATCCACCAATAATCCAGACCAATCTTCAAACAtcatgaaaaata
caaaaagaacaaagaaatgttttgcCATAAACATTTGGTATGGTCAACCA
TTAATCAACGATTGGTGTCAAAAGAATTGTCGTGATGATTCATGTGAAGG
TTACAAAAATTATTGCTCCTGTGATCCTGACTGGAAACCAAATACCTCTT
GCAAAGCCAGTAAACTTTTTAGtgcaaataaaaacattgaaaaatggTGC
AGCAACACTTGTCCGACTGGTTATTGCCCAAAAGCATTTTGTCATTG Run BLAST on NCBI protein sequence of TCONS_00072327-protein >TCONS_00072327-protein ID=TCONS_00072327-protein|Name=TCONS_00072327-protein|organism=Clytia hemisphaerica|type=polypeptide|length=648bp
MANMVVSQAEYVRICYYTNWSQYRPGKAKFSPSHIDPFLCTHIVYAFAKI
VEHRLEPYEWNDDEYANYYKQIINLKNKNPALKILLAVGGWNHESQGSPF
SEMVKTRSNRQGFIQQSIRFLRQRGFDGLDLDWEYPASRTSPLSDKQRFT
VLCKELQQAFDQEARSSGKERLMLTAAVAAGKATIQRAYEVSKLGQSLDM
LHLMSYDLAGAWDGKTGHHTSMDANRKWSVPVGLDTWINGGFPANKIALG
LGTYGRSFTLTSKSNSKMGEKCKGAGASGPSTRESGFLSYYEICDKIKSG
MKVVQHPKAMAPYGHKDNYWVGYDDIESLRYKVKKLIKGRGLKGAMFWSL
DLDDFSGAHCNQGKFPLLNAVKKELGAQGTVTSIISKSAHIKTKPKIGEK
LLKSTRTTTTTTKAPMKSASNKKRCFAANVWLGHAAMDQWCIRNCADGNC
DPRFCSCEETSMKLSTTTTTQPTTTTTQPTTTTTPYTTTTTKPTTMAIRQ
TTTTIRPTTTTKPKKMIIRPITTTTPQTTATVQSSIMTTQPTATAVQQSM
KKSTNNPDQSSNIMKNTKRTKKCFAINIWYGQPLINDWCQKNCRDDSCEG
YKNYCSCDPDWKPNTSCKASKLFSANKNIEKWCSNTCPTGYCPKAFCH Run BLAST on NCBI transcript from alignment at scaffold_76:153102..155220- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072327 ID=TCONS_00072327|Name=TCONS_00072327|organism=Clytia hemisphaerica|type=transcript|length=2119bp|location=Sequence derived from alignment at scaffold_76:153102..155220- (Clytia hemisphaerica)
TATGGCCAATATGGTAGTTTCACAAGCTGAATATGTTCGAATTTGCTACT
ACACGAATTGGTCACAATATCGTCCAGGAAAAGCCAAGTTTTCACCATCA
CACATCGATCCTTTTCTTTGCACACATATCGTCTATGCTTTTGCAAAGAT
CGTCGAACATCGTTTGGAACCTTATGAATGGAATGATGATGAATATGCAA
ATTATTACAAACAAATCATTAATTTAAAGAACAAAAATCCAGCATTGAAG
ATTCTACTTGCTGTTGGTGGATGGAATCACGAATCTCAAGGAAGTCCTTT
CTCCGAAATGGTAAAGACACGCTCAAACAGACAAGGATTCATTCAACAAA
GTATCCGGTTCCTCAGACAACGAGGTTTCGATGGATTGGATTTAGATTGG
GAATATCCAGCCAGTAGAACATCTCCATTATCGGACAAACAAAGATTCAC
AGTCCTTTGCAAAGAACTTCAACAAGCCTTCGACCAAGAAGCTCGATCTT
CTGGCAAAGAAAGATTAATGCTGACAGCAGCCGTAGCAGCAGGAAAGGCA
ACCATCCAAAGAGCTTACGAAGTTTCAAAACTCGGCCAATCTTTGGATAT
GTTGCATTTGATGAGTTACGACCTTGCAGGAGCTTGGGATGGTAAAACTG
GTCACCACACATCAATGGATGCTAACAGGAAATGGTCCGTTCCCGTTGGA
TTAGATACATGGATTAACGGTGGATTTCCAGCTAATAAGGTAGGTGAAGA
TTCAGATTTAGATTAGGCTTAAACAAAGCGAAGGTTTCAATACTAAAGAA
CTGAAATCCACAATTTGCTAATTCTCGGTTTTACTGGATAATAAATGTTT
TTTCCCATATTAAAAAACAAAAAAACTAAACGAACCATATTTCCTTTAAT
ATTATCTTTAGATTGCGTTGGGTTTGGGAACATACGGCAGATCATTCACA
TTGACTTCAAAGTCCAATTCAAAGATGGGAGAAAAATGTAAAGGAGCTGG
AGCAAGTGGTCCTTCCACCAGAGAAAGTGGATTTCTCTCTTATTACGAAA
TTTGCGACAAAATTAAATCTGGAATGAAAGTAGTTCAACATCCTAAAGCA
ATGGCACCATATGGTCACAAAGACAATTATTGGGTTGGTTATGATGACAT
TGAAAGTTTGAGATATAAAGTCAAGAAACTGATCAAAGGACGCGGATTAA
AAGGAGCCATGTTTTGGTCACTTGATTTGGATGACTTTTCTGGAGCTCAT
TGTAACCAAGGAAAATTCCCTTTGCTGAATGCTGTAAAGAAAGAACTTGG
TGCACAAGGAACAGTTACTTCAATCATCTCCAAATCAGCTCACATCAAAA
CCAAACCAAAGATTGGCGAGAAGTTATTGAAGAGCACCCGAACAACCACC
ACAACAACAAAAGCACCAATGAAATCAGCATCAAACAAAAAACGATGTTT
TGCAGCCAACGTGTGGCTTGGTCATGCTGCAATGGATCAATGGTGCATTC
GAAACTGTGCCGACGGAAACTGTGATCCTCGCTTTTGTTCCTGTGAAGAA
ACATCAATGAAATTATCTACGACAACGACCACTCAACCGACAACAACGAC
CACTCAACCGACAACAACGACCACTCCATATACAACAACGACCACCAAGC
CTACGACAATGGCCATCCGACAAACCACTACTACCATCAGGCCAACAACT
ACCACAAAACCCAAAAAAATGATAATTCGACCAATAACAACAACCACTCC
ACAAACAACAGCTACTGTCCAATCATCAATTATGACGACTCAACCAACAG
CAACGGCCGTTCAACAAAGCATGAAGAAATCCACCAATAATCCAGACCAA
TCTTCAAACATCATGAAAAATACAAAAAGAACAAAGAAATGTTTTGCCAT
AAACATTTGGTATGGTCAACCATTAATCAACGATTGGTGTCAAAAGAATT
GTCGTGATGATTCATGTGAAGGTTACAAAAATTATTGCTCCTGTGATCCT
GACTGGAAACCAAATACCTCTTGCAAAGCCAGTAAACTTTTTAGTGCAAA
TAAAAACATTGAAAAATGGTGCAGCAACACTTGTCCGACTGGTTATTGCC
CAAAAGCATTTTGTCATTG Coding sequence (CDS) from alignment at scaffold_76:153102..155220- >TCONS_00072327 ID=TCONS_00072327|Name=TCONS_00072327|organism=Clytia hemisphaerica|type=CDS|length=3888bp|location=Sequence derived from alignment at scaffold_76:153102..155220- (Clytia hemisphaerica)
ATTGCGTTGGGTTTGGGAACATACGGCAGATCATTCACATTGACTTCAAA
GTCCAATTCAAAGATGGGAGAAAAATGTAAAGGAGCTGGAGCAAGTGGTC
CTTCCACCAGAGAAAGTGGATTTCTCTCTTATTACGAAATTTGCGACAAA
ATTAAATCTGGAATGAAAGTAGTTCAACATCCTAAAGCAATGGCACCATA
TGGTCACAAAGACAATTATTGGGTTGGTTATGATGACATTGAAAGTTTGA
GATATAAAGTCAAGAAACTGATCAAAGGACGCGGATTAAAAGGAGCCATG
TTTTGGTCACTTGATTTGGATGACTTTTCTGGAGCTCATTGTAACCAAGG
AAAATTCCCTTTGCTGAATGCTGTAAAGAAAGAACTTGGTGCACAAGGAA
CAGTTACTTCAATCATCTCCAAATCAGCTCACATCAAAACCAAACCAAAG
ATTGGCGAGAAGTTATTGAAGAGCACCCGAACAACCACCACAACAACAAA
AGCACCAATGAAATCAGCATCAAACAAAAAACGATGTTTTGCAGCCAACG
TGTGGCTTGGTCATGCTGCAATGGATCAATGGTGCATTCGAAACTGTGCC
GACGGAAACTGTGATCCTCGCTTTTGTTCCTGTGAAGAAACATCAATGAA
ATTATCTACGACAACGACCACTCAACCGACAACAACGACCACTCAACCGA
CAACAACGACCACTCCATATACAACAACGACCACCAAGCCTACGACAATG
GCCATCCGACAAACCACTACTACCATCAGGCCAACAACTACCACAAAACC
CAAAAAAATGATAATTCGACCAATAACAACAACCACTCCACAAACAACAG
CTACTGTCCAATCATCAATTATGACGACTCAACCAACAGCAACGGCCGTT
CAACAAAGCATGAAGAAATCCACCAATAATCCAGACCAATCTTCAAACAT
CATGAAAAATACAAAAAGAACAAAGAAATGTTTTGCCATAAACATTTGGT
ATGGTCAACCATTAATCAACGATTGGTGTCAAAAGAATTGTCGTGATGAT
TCATGTGAAGGTTACAAAAATTATTGCTCCTGTGATCCTGACTGGAAACC
AAATACCTCTTGCAAAGCCAGTAAACTTTTTAGTGCAAATAAAAACATTG
AAAAATGGTGCAGCAACACTTGTCCGACTGGTTATTGCCCAAAAGCATTT
TGTCATATGGCCAATATGGTAGTTTCACAAGCTGAATATGTTCGAATTTG
CTACTACACGAATTGGTCACAATATCGTCCAGGAAAAGCCAAGTTTTCAC
CATCACACATCGATCCTTTTCTTTGCACACATATCGTCTATGCTTTTGCA
AAGATCGTCGAACATCGTTTGGAACCTTATGAATGGAATGATGATGAATA
TGCAAATTATTACAAACAAATCATTAATTTAAAGAACAAAAATCCAGCAT
TGAAGATTCTACTTGCTGTTGGTGGATGGAATCACGAATCTCAAGGAAGT
CCTTTCTCCGAAATGGTAAAGACACGCTCAAACAGACAAGGATTCATTCA
ACAAAGTATCCGGTTCCTCAGACAACGAGGTTTCGATGGATTGGATTTAG
ATTGGGAATATCCAGCCAGTAGAACATCTCCATTATCGGACAAACAAAGA
TTCACAGTCCTTTGCAAAGAACTTCAACAAGCCTTCGACCAAGAAGCTCG
ATCTTCTGGCAAAGAAAGATTAATGCTGACAGCAGCCGTAGCAGCAGGAA
AGGCAACCATCCAAAGAGCTTACGAAGTTTCAAAACTCGGCCAATCTTTG
GATATGTTGCATTTGATGAGTTACGACCTTGCAGGAGCTTGGGATGGTAA
AACTGGTCACCACACATCAATGGATGCTAACAGGAAATGGTCCGTTCCCG
TTGGATTAGATACATGGATTAACGGTGGATTTCCAGCTAATAAGATTGCG
TTGGGTTTGGGAACATACGGCAGATCATTCACATTGACTTCAAAGTCCAA
TTCAAAGATGGGAGAAAAATGTAAAGGAGCTGGAGCAAGTGGTCCTTCCA
CCAGAGAAAGTGGATTTCTCTCTTATTACGAAATTTGCGACAAAATTAAA
TCTGGAATGAAAGTAGTTCAACATCCTAAAGCAATGGCACCATATGGTCA
CAAAGACAATTATTGGGTTGGTTATGATGACATTGAAAGTTTGAGATATA
AAGTCAAGAAACTGATCAAAGGACGCGGATTAAAAGGAGCCATGTTTTGG
TCACTTGATTTGGATGACTTTTCTGGAGCTCATTGTAACCAAGGAAAATT
CCCTTTGCTGAATGCTGTAAAGAAAGAACTTGGTGCACAAGGAACAGTTA
CTTCAATCATCTCCAAATCAGCTCACATCAAAACCAAACCAAAGATTGGC
GAGAAGTTATTGAAGAGCACCCGAACAACCACCACAACAACAAAAGCACC
AATGAAATCAGCATCAAACAAAAAACGATGTTTTGCAGCCAACGTGTGGC
TTGGTCATGCTGCAATGGATCAATGGTGCATTCGAAACTGTGCCGACGGA
AACTGTGATCCTCGCTTTTGTTCCTGTGAAGAAACATCAATGAAATTATC
TACGACAACGACCACTCAACCGACAACAACGACCACTCAACCGACAACAA
CGACCACTCCATATACAACAACGACCACCAAGCCTACGACAATGGCCATC
CGACAAACCACTACTACCATCAGGCCAACAACTACCACAAAACCCAAAAA
AATGATAATTCGACCAATAACAACAACCACTCCACAAACAACAGCTACTG
TCCAATCATCAATTATGACGACTCAACCAACAGCAACGGCCGTTCAACAA
AGCATGAAGAAATCCACCAATAATCCAGACCAATCTTCAAACATCATGAA
AAATACAAAAAGAACAAAGAAATGTTTTGCCATAAACATTTGGTATGGTC
AACCATTAATCAACGATTGGTGTCAAAAGAATTGTCGTGATGATTCATGT
GAAGGTTACAAAAATTATTGCTCCTGTGATCCTGACTGGAAACCAAATAC
CTCTTGCAAAGCCAGTAAACTTTTTAGTGCAAATAAAAACATTGAAAAAT
GGTGCAGCAACACTTGTCCGACTGGTTATTGCCCAAAAGCATTTTGTCAT
ATGGCCAATATGGTAGTTTCACAAGCTGAATATGTTCGAATTTGCTACTA
CACGAATTGGTCACAATATCGTCCAGGAAAAGCCAAGTTTTCACCATCAC
ACATCGATCCTTTTCTTTGCACACATATCGTCTATGCTTTTGCAAAGATC
GTCGAACATCGTTTGGAACCTTATGAATGGAATGATGATGAATATGCAAA
TTATTACAAACAAATCATTAATTTAAAGAACAAAAATCCAGCATTGAAGA
TTCTACTTGCTGTTGGTGGATGGAATCACGAATCTCAAGGAAGTCCTTTC
TCCGAAATGGTAAAGACACGCTCAAACAGACAAGGATTCATTCAACAAAG
TATCCGGTTCCTCAGACAACGAGGTTTCGATGGATTGGATTTAGATTGGG
AATATCCAGCCAGTAGAACATCTCCATTATCGGACAAACAAAGATTCACA
GTCCTTTGCAAAGAACTTCAACAAGCCTTCGACCAAGAAGCTCGATCTTC
TGGCAAAGAAAGATTAATGCTGACAGCAGCCGTAGCAGCAGGAAAGGCAA
CCATCCAAAGAGCTTACGAAGTTTCAAAACTCGGCCAATCTTTGGATATG
TTGCATTTGATGAGTTACGACCTTGCAGGAGCTTGGGATGGTAAAACTGG
TCACCACACATCAATGGATGCTAACAGGAAATGGTCCGTTCCCGTTGGAT
TAGATACATGGATTAACGGTGGATTTCCAGCTAATAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072327-exon-scaffold_76-1575043694:154482..155220 | TCONS_00072327-exon-scaffold_76-1575043694:154482..155220 | Clytia hemisphaerica | exon |
| TCONS_00072327-exon-scaffold_76-1575043694:153102..154309 | TCONS_00072327-exon-scaffold_76-1575043694:153102..154309 | Clytia hemisphaerica | exon |
| TCONS_00072327-exon-scaffold_76-1510915933:154482..155220 | TCONS_00072327-exon-scaffold_76-1510915933:154482..155220 | Clytia hemisphaerica | exon |
| TCONS_00072327-exon-scaffold_76-1510915933:153102..154309 | TCONS_00072327-exon-scaffold_76-1510915933:153102..154309 | Clytia hemisphaerica | exon |
| TCONS_00072327-exon-scaffold_76-1491911889:154482..155220 | TCONS_00072327-exon-scaffold_76-1491911889:154482..155220 | Clytia hemisphaerica | exon |
| TCONS_00072327-exon-scaffold_76-1491911889:153102..154309 | TCONS_00072327-exon-scaffold_76-1491911889:153102..154309 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_76 | supercontig | scaffold_76:153102..155220 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008061 | chitin binding |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0005975 | carbohydrate metabolic process |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0005975 |
carbohydrate metabolic process |
| molecular_function |
GO:0008061 |
chitin binding |
| molecular_function |
GO:0004553 |
hydrolase activity, hydrolyzing O-glycosyl compounds |
Blast
BLAST of TCONS_00072327 vs. Swiss-Prot (Human)
Match: CHIT1 (Chitotriosidase-1 OS=Homo sapiens GN=CHIT1 PE=1 SV=1) HSP 1 Score: 380.948 bits (977), Expect = 1.448e-124 Identity = 180/369 (48.78%), Postives = 251/369 (68.02%), Query Frame = 2
Query: 41 ICYYTNWSQYRPGKAKFSPSHIDPFLCTHIVYAFAKIVEHRLEPYEWNDDEYANYYKQIINLKNKNPALKILLAVGGWNHESQGSPFSEMVKTRSNRQGFIQQSIRFLRQRGFDGLDLDWEYPASRTSPLSDKQRFTVLCKELQQAFDQEARSSGKERLMLTAAVAAGKATIQRAYEVSKLGQSLDMLHLMSYDLAGAWDGKTGHHTSM-------DANRKWSVPVGLDTWINGGFPANKIALGLGTYGRSFTLTSKSNSKMGEKCKGAGASGPSTRESGFLSYYEICDKIKSGMKVVQHPKAMAPYGHKDNYWVGYDDIESLRYKVKKLIKGRGLKGAMFWSLDLDDFSGAHCNQGKFPLLNAVKKEL 1126
+CY+TNW+QYR G+A+F P +DP LCTH++YAFA + H+L EWND+ Y++ LK NP LK LLA+GGWN +Q F++MV T +NRQ F+ +IRFLR+ FDGLDLDWEYP S+ SP DK+RFT L ++L AF QEA++SGKERL+L+AAV AG+ + YEV K+ Q+LD ++LM+YD G+W+ TGH++ + A +V + W+ G PA+K+ LG+ TYGRSFTL S S++++G G+G GP T+E G L+YYE+C + + +Q K PY +DN WVG+DD+ES + KV L K +GL GAM W+LDLDDF+G CNQG++PL+ +++EL
Sbjct: 25 VCYFTNWAQYRQGEARFLPKDLDPSLCTHLIYAFAGMTNHQLSTTEWNDE---TLYQEFNGLKKMNPKLKTLLAIGGWNFGTQ--KFTDMVATANNRQTFVNSAIRFLRKYSFDGLDLDWEYPGSQGSPAVDKERFTTLVQDLANAFQQEAQTSGKERLLLSAAVPAGQTYVDAGYEVDKIAQNLDFVNLMAYDFHGSWEKVTGHNSPLYKRQEESGAAASLNVDAAVQQWLQKGTPASKLILGMPTYGRSFTLASSSDTRVGAPATGSGTPGPFTKEGGMLAYYEVCSWKGATKQRIQDQK--VPYIFRDNQWVGFDDVESFKTKVSYL-KQKGLGGAMVWALDLDDFAGFSCNQGRYPLIQTLRQEL 385
The following BLAST results are available for this feature:
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