TCONS_00072312 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072312
Unique NameTCONS_00072312
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1617

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072312 ID=TCONS_00072312|Name=TCONS_00072312|organism=Clytia hemisphaerica|type=transcript|length=1617bp
GCTGAAGGTAGCGATTTACCGAGACGAACCAATCAACAAAACAATATAAA
AGCTGTGATGATTGATAGGTAAGTATAAATAGAGATAGAGTCTCGTAAGC
GAAAATCACTATCATTTCCTAGTATTGCTCAATGTCAATCGAAACAGTTT
TGTCATATATGTGCTGATAATATTATGCTTGCTGATTGCTGAAGGTAGCG
ATTTACCGAGACGGACCAATCAACGAAACGATATAAAAGCTGTGATGATT
GATATGTAAGTATAAATAGAGATAGAAAGTCTCGTAAGCGAAAATCATAA
TTATTTCGATTACGAGGAACTGAGTGACAAGACAACATTAATTTTGAGCA
ACAATGGTTTTCAAGATTATTTTACTGTGTGCTGTAATAGGTTTTTCTTT
CCAAGCACAAACACTGCGCGAGTTGAAATTCGTTGGAGGTTCAGTCGGAA
CAACATCCGTTTACAGCCTACCAAGTTGGAAAGCTGAAAATGCCTTTCTG
CAGGGTAGCGACCAAGTATGGCACAGTGGAAGAAATGCCCAAGGCACTGG
CAACCTTGATTACGCTTTTCCTCACTTGATCTGGTACAAATTCCGACAAG
CTTTTATTCCAGCACGTTTGTCTTTTAAGTCAAGACCTACATCGAATTCT
GGATGTGGGTCACATGGTTGTGCTGCAACAAAGTATCAATTTATTGGTAC
CAACGACCCTAAATGTGATCAATATTCCAAATGGACTGTTGTATGTGAAA
ACCTTTCTGGCGATGGAATAAGCAATATCAACAGTTCACCAAAATATTGT
ACAGTTGATGAAAGCATGCGTGAATCATTCAGTTGTTTGGGAATCAGTGT
TTTGGACAGCGCATATACTGGTGCAAGTGAAGTCTCCATCAATGGGATCC
GAATGTGGGCTAGAGACTAGAATCAATCTGTAATAATATTTTCATACAat
gtttatttgaaaatatNTGGTACCAACGACCCTAAATGTGATCAATATTC
CAAATGGACTGTTGTATGTGAAGACCTTTCTGGCGATGGAATAAGCAATA
TCAACAGTTCACCAAAATATTGTACAGTTGATGAAAGCATGCGTGAATCA
TTCAGTTGTTTGGGAATCAGTGTTTTGGACAGCGCATATACTGGTGCAAG
TGAAGTCTCCATCAATGGGATCCGAATGTGGGCTAGAGACTAGAATCAAT
CTGTAATAATATTTTCATACAatgtttatttgaaaatatgaaaaaaactt
ttcgttTCTTAGTTTAAATTTGTCTATCATTAATTTTCAGCAGATACAAA
TCATGAGCACGTCCAATAACTTTCgcatctgaattttttttttgttattg
tgCACCTTGAAACTATATATAAGTGTTCCACTTTTTCAGGACACacttat
atattttcttttggaCGGTAAGCGCTTCGAAAACTTCCCCAAGGTATCAC
TGTAAGGCGTTAAGGGCTTTACTataaattattatttatttcaGTTTGTA
TTTCATGTATAATTCATCTCTTTCTATCTCTTAATaaagaacaaaatttt
gaatctAAAGACAATGTAATATTGAGTTCATTTTCCAAAGAAGCTTTTAC
TGTTTTTTCCCATTGAA
Run BLAST on NCBI

transcript from alignment at scaffold_76:102012..107272+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072312 ID=TCONS_00072312|Name=TCONS_00072312|organism=Clytia hemisphaerica|type=transcript|length=5261bp|location=Sequence derived from alignment at scaffold_76:102012..107272+ (Clytia hemisphaerica)
GCTGAAGGTAGCGATTTACCGAGACGAACCAATCAACAAAACAATATAAA
AGCTGTGATGATTGATAGGTAAGTATAAATAGAGATAGAGTCTCGTAAGC
GAAAATCACTATCATTTCCTAGTATTGCTCAATGTCAATCGAAACAGTTT
TGTCATATATGTGCTGATAATATTATGCTTGCTGATTGCTGAAGGTAGCG
ATTTACCGAGACGGACCAATCAACGAAACGATATAAAAGCTGTGATGATT
GATATGTAAGTATAAATAGAGATAGAAAGTCTCGTAAGCGAAAATCATAA
TTATTTCGATTACGAGGAACTGAGTGACAAGACAACATTAATTTTGAGCA
ACAATGGTTTTCAAGATTATTTTACTGTGTGCTGTAATAGGTTTTTCTTT
CCAAGGTAAATTGTATTGTGTTTTTGACTGCAAACGTGGTGTATATCAGC
TGGCTCAAATTTATTGGGAACTTGGTACCTCAGGAAAATGGGAGTTTTAA
TCtaaatttcaaagaattttaaagAGATATTGTGCTGTGAAATGGAATTT
AATTACACGACGATGGAggcttttttagaaataaatttgagaaaagcgtg
aaaaaaagaacaaactatataagaacattaggcttcgACATGGctgtaaa
atgttaagaaaaagttgagaacattttgagtctttgcggactctaaaaga
cacaatttcttagaaaaCCCAATAAAAATACTCATCATAAAAGGGTgaga
ttaagaacattttaagaaactgtttaggctcaaaactcaaaaagttactt
AATTAAGAAACTAAGAAAGTCCGAGGACTTCAAAAAATTAGTTgatgatc
ttataaaaaaatacgtgTAGTACCTGAAAAGGCCACGGGCTCTGCCGAAA
ATCTTTTGATAAGTGAGGTAAGGGTAAGGGTAccaggtttgcgaggtgac
gggtatgtccaagcaaaaattcagaaatcggCCCTTTGAGAAAAGACtga
atttcaaagtttttgtgACTCTTTGATGGactatttttacaatttttagc
tcaaaattaCCTGATTTAATGACTTTTTAAGGGTGTCGTCGATGTTTGAT
ATTATgtaatttttggacctattcAGAGGTTCAATTGctaaattttcgtt
tttgtacccctttgatgGACTTTCGAGCACGTACCAAGTATACCCACTTT
TCCAAGTATCTctcgggaaattttttttaagccGGTGTGTTTTTAGCCGT
TCTAATCTTAGCCATTCGATTAAGTTATTTGTAACGCCAACATGTTTTCT
ACAACATGGCTTATTGTAATCCATTTCTTTATAGCACAAACACTGCGCGA
GTTGAAATTCGTTGGAGGTTCAGTCGGAACAACATCCGTTTACAGCCTAC
CAAGTTGGAAAGCTGAAAATGCCTTTCTGCAGGTTTGTGATTAAAACCTT
AATTgtcaactacacgtttttttttattagaacaccttaaatttggctga
gcctggatgtgcttattttttagcaattttcagcctagaatgttcttaaa
tgcgttcttaatttttcagactactctaaatcgacaatatgatacaaaat
aaagagcactcaaatttggcaaaatttggacaatatttgactctcgactt
ttgaagatccacccctaaattcggtagaaaactgcttaaaaagaggaaaa
aattgtagtttcttgtcatttttttccaaactgaggctgggcatgttctt
aagatgttcttaatttttcgacgaatttcagcctatatgttcttataaac
taggttctaataaaaaaaaaacgtgtaggtttAATTCCCACCTAACTTCT
TTGTATAGATCAAACTCCTACATCCCTTTAAAGTAGCTCTGAAACGAATA
GgaaatttatatatttatatattcTTCTGACTTTTATAAAATACAACACG
ACACTCTGCTTTGACGTGATGATCTGATAAGCTTTTTCNAAACGAATAGg
aaatttatatatttatatattcTTCTGACTTTTATAAAATACAACACGAC
ACTCTGCTTTGACGTGATGATCTGATAAGCTCTTTCAGCAAAAAAACATT
ACATCTAACACTGCCTCTTGATTCTTTTGATTGGAAACAAAAGCGCAAGC
AATTGGTTTCTAAagtgatttttggtgttttgatataattttgctttatt
tcgGCTAATCACCACGTTCATATAAAATAATCNGCCTCTTGATTCTTTTG
ATTGGAAACAAAAGCGCAAGCAACTGGTTTCTAAAGTaatttttggtgtt
ttgatataattttgctttatttctaatatttctttttttatccaAAATCT
AGATGATAATCATAGAGAGTACGTCAAAACTGAGCAGATCTTCTTACTGA
GCCACATCTTTTAAAGCGAATACGTTTCGTGCGTAGTGTAATCACGATCT
GTTTGGAGATTACCTCAAACCTAAACCCATTCGCTTTGAGCCTgcataca
tttttgttttgcttttaacCTTCAATTCAATTANTTTCGTGCGTAGTGTA
ATCACGATCTGTTTGGAGATTACCTCAAACCTAAACACATTCGCTTTGAG
CCTgcatacatttttgttttgtttttaacctACAATTCAATTGTATAGCG
TGTGGAAAAGATAAATCAGGGCATTATTTTCTTTAATATCAATAATTTAA
AAAgcgaaaatgaaaataaaactcgAAGAAACAAAAggagaaaatgaatt
tttataACTGTGACTCAAAATTCatattttcaactctttttttagGGTAG
CGACCAAGTATGGCACAGTGGAAGAAATGCCCAAGGCACTGGCAACCTTG
ATTACGCTTTTCCTCACTTGATCTGGTACAAATTCCGACAAGCTTTTATT
CCAGCACGTTTGTCTTTTAAGTCAAGACCTACATCGAATTCTGGATGTGG
GTCACATGGTTGTGCTGCAACAAAGTATCAATTTATTGGTACCAACGACC
CTAAATGTGATCAATATTCCAAATGGACTGTTGTATGTGAAAACCTTTCT
GGCGATGGAATAAGGTACTGAACGGTTactgtaaatgttttttataagca
agtgtctgtccctttatcaggctcgcattatgctaagcattctattgttc
tcaaaacaatagagccattgtttagatactaaaaactgagcctgtatatg
cttaaaaacgttatgcttataaaataaaaaacatgtatatgaAATGCCTC
CATACTTAAAGGCCTTAGGATCAGattcgaaaatcaaaaatattttaaaa
atcttacaAATATAATCTGAGAGGTTCCAGGCCGTTTGTTCACTTATTTA
ATAGGTTCATTGCCAACCAGTTAGGCTATCTGAAAGAAAGAATAAAGTAA
TGATAATTTGGGATTTttccataggcgtagcgagataccctgcaaaattt
atggatgagagcggtttttacgacactgtaattattgtctttgttttata
agataatgaatatgtcataaacgtctgcacttcTTAATAAATCTTCCAGA
GTATATCTCGCTTTGCTTTTGTTTTCATATACATATTGCAGCTAATTTCA
ATGTACGTAGGATAAAAAAATGCGGCAAAGAACATATTCTTGGTATgata
atatttttaacttttggaattgtttttgtatttgatttCTCTTGACAAAT
TCGtgttaaaaattcttatttatcCTTTTCCATTGTTCAGCAATATCAAC
AGTTCACCAAAATATTGTACAGTTGATGAAAGCATGCGTGAATCATTCAG
TTGTTTGGGAATCAGTGTTTTGGACAGCGCATATACTGGTGCAAGTGAAG
TCTCCATCAATGGGATCCGAATGTGGGCTAGAGACTAGAATCAATCTGTA
ATAATATTTTCATACAatgtttatttgaaaatatNTGGTACCAACGACCC
TAAATGTGATCAATATTCCAAATGGACTGTTGTATGTGAAGACCTTTCTG
GCGATGGAATAAGGTACTGAACGGTTactgtaaatgttttttataagcaa
gtgtctgtccctttatcaggctcgcattatgctaagcattctattgttct
caaaacaatagagccattgtttagatactaaaaactgagcctgtatatgc
ttaaaaacgttatgcttataaaataaaaaacatgtatatgaAATGCCTCC
ATACTTAAAGGCCTTAGGATCAGattcgaaaatcaaaaatattttaaaaa
tcttacaAATATAATCTGAGAGGTTCCAGGCCGTTTGTTCACTTATTTAA
TAGGTTCATTGCCAACCAGTTAGGCTATCTGAAAGAAAGAATAAAGTAAT
GATAATTTGGGATTTttccataggcgtagcgagataccctgcaaaattta
tggatgagagcggtttttacgacactgtaattattgtctttgttttataa
gataatgaatatgtcataaacgtctgcacttcTTAATAAATCTTCCAGAG
TATATCTCGCTTTGCTTTTGTTTTCATATACATATTGCAGCTAATTTCAA
TGTACGTAGGATAAAAAAATGCGGCAAAGAACATATTCTTGGTATgataa
tatttttaacttttggaattgtttttgtatttgatttCTCTTGACAAATT
CGtgttaaaaattcttatttatcCTTTTCCATTGTTCAGCAATATCAACA
GTTCACCAAAATATTGTACAGTTGATGAAAGCATGCGTGAATCATTCAGT
TGTTTGGGAATCAGTGTTTTGGACAGCGCATATACTGGTGCAAGTGAAGT
CTCCATCAATGGGATCCGAATGTGGGCTAGAGACTAGAATCAATCTGTAA
TAATATTTTCATACAatgtttatttgaaaatatgaaaaaaacttttcgtt
TCTTAGTTTAAATTTGTCTATCATTAATTTTCAGCAGATACAAATCATGA
GCACGTCCAATAACTTTCgcatctgaattttttttttgttattgtgCACC
TTGAAACTATATATAAGTGTTCCACTTTTTCAGGACACacttatatattt
tcttttggaCGGTAAGCGCTTCGAAAACTTCCCCAAGGTATCACTGTAAG
GCGTTAAGGGCTTTACTataaattattatttatttcaGTTTGTATTTCAT
GTATAATTCATCTCTTTCTATCTCTTAATaaagaacaaaattttgaatct
AAAGACAATGTAATATTGAGTTCATTTTCCAAAGAAGCTTTTACTGTTTT
TTCCCATTGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044900XLOC_044900Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072312-exon-scaffold_76-1491911889:102012..102416TCONS_00072312-exon-scaffold_76-1491911889:102012..102416Clytia hemisphaericaexon
TCONS_00072312-exon-scaffold_76-1510915933:102012..102416TCONS_00072312-exon-scaffold_76-1510915933:102012..102416Clytia hemisphaericaexon
TCONS_00072312-exon-scaffold_76-1575043694:102012..102416TCONS_00072312-exon-scaffold_76-1575043694:102012..102416Clytia hemisphaericaexon
TCONS_00072312-exon-scaffold_76-1491911889:103346..103443TCONS_00072312-exon-scaffold_76-1491911889:103346..103443Clytia hemisphaericaexon
TCONS_00072312-exon-scaffold_76-1510915933:103346..103443TCONS_00072312-exon-scaffold_76-1510915933:103346..103443Clytia hemisphaericaexon
TCONS_00072312-exon-scaffold_76-1575043694:103346..103443TCONS_00072312-exon-scaffold_76-1575043694:103346..103443Clytia hemisphaericaexon
TCONS_00072312-exon-scaffold_76-1491911889:104807..105075TCONS_00072312-exon-scaffold_76-1491911889:104807..105075Clytia hemisphaericaexon
TCONS_00072312-exon-scaffold_76-1510915933:104807..105075TCONS_00072312-exon-scaffold_76-1510915933:104807..105075Clytia hemisphaericaexon
TCONS_00072312-exon-scaffold_76-1575043694:104807..105075TCONS_00072312-exon-scaffold_76-1575043694:104807..105075Clytia hemisphaericaexon
TCONS_00072312-exon-scaffold_76-1491911889:105752..106024TCONS_00072312-exon-scaffold_76-1491911889:105752..106024Clytia hemisphaericaexon
TCONS_00072312-exon-scaffold_76-1510915933:105752..106024TCONS_00072312-exon-scaffold_76-1510915933:105752..106024Clytia hemisphaericaexon
TCONS_00072312-exon-scaffold_76-1575043694:105752..106024TCONS_00072312-exon-scaffold_76-1575043694:105752..106024Clytia hemisphaericaexon
TCONS_00072312-exon-scaffold_76-1491911889:106701..107272TCONS_00072312-exon-scaffold_76-1491911889:106701..107272Clytia hemisphaericaexon
TCONS_00072312-exon-scaffold_76-1510915933:106701..107272TCONS_00072312-exon-scaffold_76-1510915933:106701..107272Clytia hemisphaericaexon
TCONS_00072312-exon-scaffold_76-1575043694:106701..107272TCONS_00072312-exon-scaffold_76-1575043694:106701..107272Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_76supercontigscaffold_76:102012..107272 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0.189188	0.225269	0	0	0.124124	0.122029	0.0737928	0.158382	0.0975576	0	0.138254	0.144626	0	0	0	0	0	0	0	0	0	0.146982
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072312 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top