TCONS_00072306 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072306
Unique NameTCONS_00072306
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length485

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072306 ID=TCONS_00072306|Name=TCONS_00072306|organism=Clytia hemisphaerica|type=transcript|length=485bp
ACCTTTTTGTCTAGCTTTCAACGTAATCCTAATTTAACTTTTTCTCGCTT
TCGTCTCTGCCAGGAGGACCCATAACTCGCCCTGGTCGGTACAATGGATC
TTGCTCACTTTCGTCTCTGCCAGGAGGACCCATAACTCGCCCTGGTCGGT
ATAAGGCTTCTGGATCTTGCTTACTTTCGTCTCTGCCAGGAGGACCCATA
ACTCGCCCTGGTCGGTACAATGGATCTTGCTCACTTTCGTCTCTGCCAGG
AGGACCCATAACCCGCCCTGGTCGGTATAAGGCTTTGGGTATCTTGTAGC
CTTCTGCAATAGAACATAAAGCCAAGACAGCAGCAAAAATTGCGACTGTT
GCAGGCTTCATGCTAAAATTGTGAAATAGATATTTGTGAAACTTTTCTTC
TGATTTTGTCAAATCCTATTTTGCCAATGGCAAATTACAATGCTGTGAGA
AGCTTTTAACGGTGTAACCCAGTCCGGAAAGTTTG
Run BLAST on NCBI

transcript from alignment at scaffold_76:60059..61827+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072306 ID=TCONS_00072306|Name=TCONS_00072306|organism=Clytia hemisphaerica|type=transcript|length=1769bp|location=Sequence derived from alignment at scaffold_76:60059..61827+ (Clytia hemisphaerica)
ACCTTTTTGTCTAGCTTTCAACGTAATCCTAATTTAACTTTTTCTCGCTT
TCGTCTCTGCCAGGAGGACCCATAACTCGCCCTGGTCGGTACAATGGATC
TTGCTCACTTTCGTCTCTGCCAGGAGGACCCATAACTCGCCCTGGTCGGT
ATAAGGCTTCTGGATCTTGCTCGCTTTCGTCTCTCCCCACAGGCCCCATA
ACTCGCCCTGGTCGGTACAATGGACCTTGCTTACTTTCGTGTCTGCCAGG
AGGACCCATAACCCGCCCTGGTCGGTATAAGGCTTCTGGATCTTGCTCGC
TTTCGTCTCTCCCCACAGGCCCCATAACTCGCCCTGGTCGGTACAATGGA
CCTTGCTTACTTTCGTGTCTGCCAGGAGGACCCATAACCCGCCCTGGTCG
GTATAAGGCTTCTGGATCTTGCTCGCTTTCGTCTCTCCCCACAGGCCCCA
TAACTCGCCCTGGTCGGTACAATGGACCTTGCTTACTTTCGTGTCTGCCA
GGAGGACCCATAACCCGCCCTGGTCGGTATAAGGCTTCTGGATCTTGCTC
GCTTTCGTCTCTCCCCACAGGCCCCATAACTCGCCCTGGTCGGTACAATG
GACCTTGCTTACTTTCGTCTCTGCCAGGAGGACCCATAACTCGCCCTGGT
CGGTATAAGGCTTCTGGATCTTGCTTACTTTCGTCTCTGCCAGGAGGTCC
CATAACTCGTCCTGGTCGGTACAATGGATCTTGCTTACTTTCGTCTCTGC
CAGGAGGACCCATAACTCGCCCTGGTCGGTACAATGGATCTTGCTCACTT
TCGTCTCTGCCAGGAGGACCCATAACTCGTCCTGGTCGGTACAATGGATC
TTGCTTGCTTTCGTCTCTGCCAGGAGGACCCATAACTCGTCCTGGTCGGT
ACAATGGATCTTGCTTGCTTTCGTCTCTGCCAGGAGGACCCATAACTCGT
CCTGGTCGGTACAATGGATCTTGCTTGCTTTCGTCTCTGCCAGGAGGACC
CATAACTCGTCCTGGTCGGTACAATGGATCTTGCTTGCTTTCGTCTCTGC
CAGGAGGACCCATAACTCGTCCTGGTCGGTACAATGGATCTTGCTTGCTT
TCGTCTCTGCCAGGAGGACCCATAACTCGTCCTGGTCGGTACAATGGATC
TTGCTTGCTTTCGTCTCTGCCAGGAGGACCCATAACTCGTCCTGGTCGGT
ACAATGGATCTTGCTTGCTTTCGTCTCTGCCAGGAGGACCCATAACTCGT
CCTGGTCGGTACAATGGATCTTGCTTGCTTTCGTCTCTGCCAGGAGGACC
CATAACTCGTCCTGGTCGGTACAATGGATCTTGCTTGCTTTCGTCTCTGC
CAGGAGGACCCATAACTCGTCCTGGTCGGTACAATGGATCTTGCTTGCTT
TCGTCTCTGCCAGGAGGACCCATAACTCGCCCTGGTCGGTACAATGGATC
TTGCTCACTTTCGTCTCTGCCAGGAGGACCCATAACTCGCCCTGGTCGGT
ACAATGGATCTTGCTCACTTTCGTCTCTGCCAGGAGGACCCATAACCCGC
CCTGGTCGGTATAAGGCTTTGGGTATCTTGTAGCCTTCTGCAATAGAACA
TAAAGCCAAGACAGCAGCAAAAATTGCGACTGTTGCAGGCTTCATGCTAA
AATTGTGAAATAGATATTTGTGAAACTTTTCTTCTGATTTTGTCAAATCC
TATTTTGCCAATGGCAAATTACAATGCTGTGAGAAGCTTTTAACGGTGTA
ACCCAGTCCGGAAAGTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044898XLOC_044898Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072306-exon-scaffold_76-1491911889:60059..60213TCONS_00072306-exon-scaffold_76-1491911889:60059..60213Clytia hemisphaericaexon
TCONS_00072306-exon-scaffold_76-1510915933:60059..60213TCONS_00072306-exon-scaffold_76-1510915933:60059..60213Clytia hemisphaericaexon
TCONS_00072306-exon-scaffold_76-1575043694:60059..60213TCONS_00072306-exon-scaffold_76-1575043694:60059..60213Clytia hemisphaericaexon
TCONS_00072306-exon-scaffold_76-1491911889:60718..60754TCONS_00072306-exon-scaffold_76-1491911889:60718..60754Clytia hemisphaericaexon
TCONS_00072306-exon-scaffold_76-1510915933:60718..60754TCONS_00072306-exon-scaffold_76-1510915933:60718..60754Clytia hemisphaericaexon
TCONS_00072306-exon-scaffold_76-1575043694:60718..60754TCONS_00072306-exon-scaffold_76-1575043694:60718..60754Clytia hemisphaericaexon
TCONS_00072306-exon-scaffold_76-1491911889:61535..61827TCONS_00072306-exon-scaffold_76-1491911889:61535..61827Clytia hemisphaericaexon
TCONS_00072306-exon-scaffold_76-1510915933:61535..61827TCONS_00072306-exon-scaffold_76-1510915933:61535..61827Clytia hemisphaericaexon
TCONS_00072306-exon-scaffold_76-1575043694:61535..61827TCONS_00072306-exon-scaffold_76-1575043694:61535..61827Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_76supercontigscaffold_76:60059..61827 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.191051	0	0.88386	0.0692429	0	0.751517	26.9069	19.4429	48.4284	20.2018	26.8569	34.4156	4.41626	1.7332	17.6003	24.573	12.5415	12.3503	1.34856	1.4481	79.9467	98.182	260.318	302.11	305.502	297.013	3095.5	3210.95	16.3567	9.7557
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072306 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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