TCONS_00072299 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072299
Unique NameTCONS_00072299
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length770

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072299 ID=TCONS_00072299|Name=TCONS_00072299|organism=Clytia hemisphaerica|type=transcript|length=770bp
GGCCACCTAAAtcctagggggcacctaaattcTTAGGGGGGACCTAGGAC
CTGCTTATAAGCCATGGTCTGATATGATGGTTAACCTTTGTGTGCTCAGA
TCATGATTGTTTTCTGCTGtgtaaagggatgggtgaaaacaaaacaatct
gaCAAATAGGTATGCTTTCTCAAAATTGTAAGGGCCGCGCTCTTCTAAAA
GGACTAGCAGCAGTGACAACAAAGATGCGTGATTGTGTTACGAAATAGGC
TTTAGGGCGCGCGCTGTATcaataaaatttagttttttactttcttttct
gaccagacgatctcaatcgaacagaatcaatgatcgaaccagtcaaacca
aatcgaatgcaatcaaccgattgaaattcgattgtcggacgcaattgaat
ctcaatcaaacatcaaaattctgggtaatattcgattggtagtttgattg
ttgttcgactgctGCGTTTGATTGTCGTTTAATTGTCTTTCGACTGCGTT
TGATTGCTCTACAGTATGCTCTAAAGAAGGCTGATTTTCCATCGTAAATC
AAAGAAGAAAGTTTGACGCCCTCTGATGTCCCGAAAAGATACAATCCACC
ACTTTTGTCATACTTTCTCAACCGTATGGAAAGGATATGATTTGTCACGT
GACctaatttggcaatttttcctTCCACCCTTATGATAACACTTGCTTTT
CTCATCCGGCCCTTACTCGCTTCAGGTCGAATCCTTAGGTCACGGTTCAA
AACCACATGTTAGCAAAGCA
Run BLAST on NCBI

protein sequence of TCONS_00072299-protein

>TCONS_00072299-protein ID=TCONS_00072299-protein|Name=TCONS_00072299-protein|organism=Clytia hemisphaerica|type=polypeptide|length=99bp
MRKASVIIRVEGKIAKLGHVTNHILSIRLRKYDKSGGLYLFGTSEGVKLS
SLIYDGKSAFFRAYCRAIKRSRKTIKRQSNAAVEQQSNYQSNITQNFDV
Run BLAST on NCBI

transcript from alignment at scaffold_75:8302..9071

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072299 ID=TCONS_00072299|Name=TCONS_00072299|organism=Clytia hemisphaerica|type=transcript|length=770bp|location=Sequence derived from alignment at scaffold_75:8302..9071 (Clytia hemisphaerica)
TGCTTTGCTAACATGTGGTTTTGAACCGTGACCTAAGGATTCGACCTGAA
GCGAGTAAGGGCCGGATGAGAAAAGCAAGTGTTATCATAAGGGTGGAagg
aaaaattgccaaattagGTCACGTGACAAATCATATCCTTTCCATACGGT
TGAGAAAGTATGACAAAAGTGGTGGATTGTATCTTTTCGGGACATCAGAG
GGCGTCAAACTTTCTTCTTTGATTTACGATGGAAAATCAGCCTTCTTTAG
AGCATACTGTAGAGCAATCAAACGCAGTCGAAAGACAATTAAACGACAAT
CAAACGCagcagtcgaacaacaatcaaactaccaatcgaatattacccag
aattttgatgtttgattgagattcaattgcgtccgacaatcgaatttcaa
tcggttgattgcattcgatttggtttgactggttcgatcattgattctgt
tcgattgagatcgtctggtcagaaaagaaagtaaaaaactaaattttatt
gATACAGCGCGCGCCCTAAAGCCTATTTCGTAACACAATCACGCATCTTT
GTTGTCACTGCTGCTAGTCCTTTTAGAAGAGCGCGGCCCTTACAATTTTG
AGAAAGCATACCTATTTGtcagattgttttgttttcacccatccctttac
aCAGCAGAAAACAATCATGATCTGAGCACACAAAGGTTAACCATCATATC
AGACCATGGCTTATAAGCAGGTCCTAGGTCCCCCCTAAgaatttaggtgc
cccctaggaTTTAGGTGGCC

Coding sequence (CDS) from alignment at scaffold_75:8302..9071

>TCONS_00072299 ID=TCONS_00072299|Name=TCONS_00072299|organism=Clytia hemisphaerica|type=CDS|length=300bp|location=Sequence derived from alignment at scaffold_75:8302..9071 (Clytia hemisphaerica)
ATGAGAAAAGCAAGTGTTATCATAAGGGTGGAaggaaaaattgccaaatt
agGTCACGTGACAAATCATATCCTTTCCATACGGTTGAGAAAGTATGACA
AAAGTGGTGGATTGTATCTTTTCGGGACATCAGAGGGCGTCAAACTTTCT
TCTTTGATTTACGATGGAAAATCAGCCTTCTTTAGAGCATACTGTAGAGC
AATCAAACGCAGTCGAAAGACAATTAAACGACAATCAAACGCagcagtcg
aacaacaatcaaactaccaatcgaatattacccagaattttgatgtttga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044895XLOC_044895Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072299-proteinTCONS_00072299-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072299-exon-scaffold_75-1491911889:8302..9071TCONS_00072299-exon-scaffold_75-1491911889:8302..9071Clytia hemisphaericaexon
TCONS_00072299-exon-scaffold_75-1510915933:8302..9071TCONS_00072299-exon-scaffold_75-1510915933:8302..9071Clytia hemisphaericaexon
TCONS_00072299-exon-scaffold_75-1575043694:8302..9071TCONS_00072299-exon-scaffold_75-1575043694:8302..9071Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_75supercontigscaffold_75:8302..9071 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.252961	0.74003	0.859892	0.840637	2.89962	3.8319	4.44835	7.66182	6.85897	6.22844	7.91457	6.70142	5.13886	6.11982	0.431462	0.462441	0.189897	0.340616	1.14284	0.286069	0.428009	0.536832	0.291129	0.264175	1.07919	3.67302	0.520289	0.370178	0.280767	0.143028
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072299 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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