TCONS_00072292 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072292
Unique NameTCONS_00072292
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length254

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072292 ID=TCONS_00072292|Name=TCONS_00072292|organism=Clytia hemisphaerica|type=transcript|length=254bp
gttcttgaaatGAAGACAATGACATGGCAAATATGTACAGGAATAAAAAC
TAGAATAAAATAAATGTCCAAATCCAATGTGGGTGTTACTTAGGTAAAGA
TGAAATATAGGAAGAAATAGAATGCTGGGCGTGCAAGCGCTGGGACAGGG
GCATATGTAAATAGAGGTATATTGCATCAGACTTCCAATCACCCATGACT
GCAATGGAGTCAAGAGGTACCCCGGCCTCCAAAGCAAAGGTGGCCCCACC
ACGT
Run BLAST on NCBI

transcript from alignment at scaffold_74:1407..1660

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072292 ID=TCONS_00072292|Name=TCONS_00072292|organism=Clytia hemisphaerica|type=transcript|length=254bp|location=Sequence derived from alignment at scaffold_74:1407..1660 (Clytia hemisphaerica)
ACGTGGTGGGGCCACCTTTGCTTTGGAGGCCGGGGTACCTCTTGACTCCA
TTGCAGTCATGGGTGATTGGAAGTCTGATGCAATATACCTCTATTTACAT
ATGCCCCTGTCCCAGCGCTTGCACGCCCAGCATTCTATTTCTTCCTATAT
TTCATCTTTACCTAAGTAACACCCACATTGGATTTGGACATTTATTTTAT
TCTAGTTTTTATTCCTGTACATATTTGCCATGTCATTGTCTTCatttcaa
gaac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044890XLOC_044890Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072292-exon-scaffold_74-1491911889:1407..1660TCONS_00072292-exon-scaffold_74-1491911889:1407..1660Clytia hemisphaericaexon
TCONS_00072292-exon-scaffold_74-1510915933:1407..1660TCONS_00072292-exon-scaffold_74-1510915933:1407..1660Clytia hemisphaericaexon
TCONS_00072292-exon-scaffold_74-1575043694:1407..1660TCONS_00072292-exon-scaffold_74-1575043694:1407..1660Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_74supercontigscaffold_74:1407..1660 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0220925	0	1.09386	4.24929	0.88633	3.08819	1.35183	0.99244	1.90537	5.87958	1.80793	0.478881	1.20671	0.93336	1.06449	0	0.678123	0	0	1.06515	0.979021	0	0.554246	1.37348	1.13603	0	0	0.661944	1.86094
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072292 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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