TCONS_00072289 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072289
Unique NameTCONS_00072289
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length663

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072289 ID=TCONS_00072289|Name=TCONS_00072289|organism=Clytia hemisphaerica|type=transcript|length=663bp
TTAAGGCATAAACCTTAGTTTTAATCCATTTTTGGTCAATCAAACACTCT
CACCTTTTTCAGTGTGCAGCCATTTTGTTTGCTTTTGTTTGGTCTGCATT
TTATTTCACTTTTCCCACCATTTTNttttgtttgtttttgtttggtcTGC
ATTTTATTTCACTTTTCCCACCATTTTGGTTATTCTGCATTTTTCTGTGT
TTGATAAGCATTTGGTCAGTATTTTATTCATTCAATTTATGTCAATTTGA
TATGCATTTCCTTTTGTTATAATTTATTCCAATTTTTCTCATAatttatt
ttggtctgtaaattagACTTTTTGATCTGCCTATAAATGCCACATCATCA
CTCAGACCTCACTTCAACAGAGACTTCAAGGAGTGAAGACCTCCTCTGAC
ATGATgtcaactcaaatcaaatgagatCAATCAATAGTCTCTTTAGTTAC
TCACATATACAAGcacattcaattttcattttcattttcacacaGTTGGT
GTTAGTCTTGACACACCCTGTGTTCTGCTGCCTGCTTACAGCATTCCACC
TCAGGCCAGCTGtttgaacactaCATTACTACACATCAATAAATTAATGC
ACTGAACAGTGTTACAAACACGGCGTTATTGTTTATTCAATCTCATCCTG
ACGCTACACCCTT
Run BLAST on NCBI

transcript from alignment at scaffold_74:13268..14413+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072289 ID=TCONS_00072289|Name=TCONS_00072289|organism=Clytia hemisphaerica|type=transcript|length=1146bp|location=Sequence derived from alignment at scaffold_74:13268..14413+ (Clytia hemisphaerica)
TTAAGGCATAAACCTTAGTTTTAATCCATTTTTGGTCAATCAAACACTCT
CACCTTTTTCAGTGTGCAGCCATTTTGTTTGCTTTTGTTTGGTCTGCATT
TTATTTCACTTTTCCCACCATTTTNttttgtttgtttttgtttggtcTGC
ATTTTATTTCACTTTTCCCACCATTTTGGTTATTCTGCATTTTTCTGTGT
TTGATAAGCATTTGGTCAGTATTTTATTCATTCAATTTATGTCAATTTGA
TATGCATTTCCTTTTGTTATAATTTATTCCAATTTTTCTCATAatttatt
ttggtctgtaaattagACTTTTTGATCTGCCTATAAATGCCACATCATCA
CTCAGACCTCACTTCAACAGAGACTTCAAGGAGTGAAGACCTCCTCTGAC
ATGATgtcaactcaaatcaaatgagatCAATCAATAGTCTCTTTAGTTAC
TCACATATACAAGCACattcaatcttcattttcacaCAGTTGGTGTTAGT
CTTGACACACCCTGTGTTCTGCTGCCTGCTTACAGCATTCTACCTCAGGC
CAGCNTTTAGTTACTCACATATACAAGcacattcaattttcattttcatt
ttcacacaGTTGGTGTTAGTCTTGACACACCCTGTGTTCTGCTGCCTGCT
TACAGCATTCCACCTCAGGCCAGCTGGtgagttttttgtttcttttctct
gTCTCTATTTGTGGCACCTAAGTTAAGTTAAGTTAGATTTTCTTTCACAT
TATATTAGTACTTCAATCATTCATTTATACATTTGTTGTTTTCTACTTCT
ACTTTTGTTCTCATAGACTTACATCCTTTTGTACCTAAGttagattattt
tattttcattcattagacttagtatttttcaatttttatNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNttattttcagtttga
acactaCATTACTACACATCAATAAATTAATGCACTGAACAGTGTTACAA
ACACGGCGTTATTGTTTATTCAATCTCATCCTGACGCTACACCCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044887XLOC_044887Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072289-exon-scaffold_74-1491911889:13268..13721TCONS_00072289-exon-scaffold_74-1491911889:13268..13721Clytia hemisphaericaexon
TCONS_00072289-exon-scaffold_74-1510915933:13268..13721TCONS_00072289-exon-scaffold_74-1510915933:13268..13721Clytia hemisphaericaexon
TCONS_00072289-exon-scaffold_74-1575043694:13268..13721TCONS_00072289-exon-scaffold_74-1575043694:13268..13721Clytia hemisphaericaexon
TCONS_00072289-exon-scaffold_74-1491911889:13836..13943TCONS_00072289-exon-scaffold_74-1491911889:13836..13943Clytia hemisphaericaexon
TCONS_00072289-exon-scaffold_74-1510915933:13836..13943TCONS_00072289-exon-scaffold_74-1510915933:13836..13943Clytia hemisphaericaexon
TCONS_00072289-exon-scaffold_74-1575043694:13836..13943TCONS_00072289-exon-scaffold_74-1575043694:13836..13943Clytia hemisphaericaexon
TCONS_00072289-exon-scaffold_74-1491911889:14313..14413TCONS_00072289-exon-scaffold_74-1491911889:14313..14413Clytia hemisphaericaexon
TCONS_00072289-exon-scaffold_74-1510915933:14313..14413TCONS_00072289-exon-scaffold_74-1510915933:14313..14413Clytia hemisphaericaexon
TCONS_00072289-exon-scaffold_74-1575043694:14313..14413TCONS_00072289-exon-scaffold_74-1575043694:14313..14413Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_74supercontigscaffold_74:13268..14413 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.27955	1.05257	1.40717	0.789925	5.35818	5.00209	4.66783	4.28765	1.60512	2.67703	0	2.36848	1.86475	2.05783	0.922946	1.79804	0.948732	1.26926	0.91325	1.56493	0.686575	1.13348	1.17406	1.8719	3.93724	3.13944	0.679685	0	2.46829	2.70829
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072289 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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