TCONS_00072267 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072267
Unique NameTCONS_00072267
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length578

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072267 ID=TCONS_00072267|Name=TCONS_00072267|organism=Clytia hemisphaerica|type=transcript|length=578bp
cttgcgagtTAAGTAAATGATATAGCccttttgcagcattaatcttcgat
acacattttggcgggacgctagtgtagTGTTACTAACTGATGGGAAAAAT
AAAGAGCTGAAACCAAATTCAGTTTATTATTCTGATACCCACAGAATAAA
TTGAAACCAAAAACCAAGTCAAAGACCTTGGAGTCACTTTGGATGTGGAT
ATGAGCTACAGTCAACATATCTAAAATCAAATCAGCAACGTCAAAGCGAT
TAGCTCATGGATATTCCAAACCTTCAAGACACCGGACACTGATGTAATGC
TAACCCTTTGAAAGTCACTTGCTATTCTGTACCTTGACTACTGCTCCCAG
CTATGGTCTCCGTCAAAGCAATGCCTCACCCAACAATTGGAGCTGCTGCA
AAAATCATTCTTGAACGGGATTTCCTCGTTGAACCACTTGAATTATTGGG
AAAATTGAGTCAACTGAAAATTTACAGTCttgaaagaagaagagaaaGGT
ACAGAATCTACACAGTGCATACTAGAAGATATCACCCCAAACTTCAACTA
CAGTAATGATGCAGGCGGCGTGCATTCC
Run BLAST on NCBI

transcript from alignment at scaffold_72:11758..12335

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072267 ID=TCONS_00072267|Name=TCONS_00072267|organism=Clytia hemisphaerica|type=transcript|length=578bp|location=Sequence derived from alignment at scaffold_72:11758..12335 (Clytia hemisphaerica)
GGAATGCACGCCGCCTGCATCATTACTGTAGTTGAAGTTTGGGGTGATAT
CTTCTAGTATGCACTGTGTAGATTCTGTACCtttctcttcttctttcaaG
ACTGTAAATTTTCAGTTGACTCAATTTTCCCAATAATTCAAGTGGTTCAA
CGAGGAAATCCCGTTCAAGAATGATTTTTGCAGCAGCTCCAATTGTTGGG
TGAGGCATTGCTTTGACGGAGACCATAGCTGGGAGCAGTAGTCAAGGTAC
AGAATAGCAAGTGACTTTCAAAGGGTTAGCATTACATCAGTGTCCGGTGT
CTTGAAGGTTTGGAATATCCATGAGCTAATCGCTTTGACGTTGCTGATTT
GATTTTAGATATGTTGACTGTAGCTCATATCCACATCCAAAGTGACTCCA
AGGTCTTTGACTTGGTTTTTGGTTTCAATTTATTCTGTGGGTATCAGAAT
AATAAACTGAATTTGGTTTCAGCTCTTTATTTTTCCCATCAGTTAGTAAC
Actacactagcgtcccgccaaaatgtgtatcgaagattaatgctgcaaaa
ggGCTATATCATTTACTTAactcgcaag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044874XLOC_044874Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072267-exon-scaffold_72-1491911889:11758..12335TCONS_00072267-exon-scaffold_72-1491911889:11758..12335Clytia hemisphaericaexon
TCONS_00072267-exon-scaffold_72-1510915933:11758..12335TCONS_00072267-exon-scaffold_72-1510915933:11758..12335Clytia hemisphaericaexon
TCONS_00072267-exon-scaffold_72-1575043694:11758..12335TCONS_00072267-exon-scaffold_72-1575043694:11758..12335Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_72supercontigscaffold_72:11758..12335 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.192291	0.468786	0.217722	0.6403	2.72281	2.45898	1.2361	2.52426	0.766156	1.6057	1.55853	0.983699	0.19183	0.664059	0	0.095416	0	0	0.498247	0	0.278877	0	0	0.13214	0.516137	1.19766	0.168297	0.140698	0	0.108725
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072267 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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