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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072266 ID=TCONS_00072266|Name=TCONS_00072266|organism=Clytia hemisphaerica|type=transcript|length=229bp
TGATCATCAATAAAGTGTTTGGTTTGGAAAGTGATAAAAACTGACTTCAT
TCCATTTCTTTTAAAAGTTTCCATATCTGTTCGATCAACCCTAAAGACAC
TGGTAACAGAAGATCTTACTTAACTGGTACCCAGTTTTAAGtttCCTGAT
CTGTCCAATCAATCCTAAAGACGCAGGCAACAGAAAATCATAACTGGTAC
CCAGTTTTAAGGTATCATTACACCCCATC Run BLAST on NCBI transcript from alignment at scaffold_72:149643..157616- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072266 ID=TCONS_00072266|Name=TCONS_00072266|organism=Clytia hemisphaerica|type=transcript|length=7974bp|location=Sequence derived from alignment at scaffold_72:149643..157616- (Clytia hemisphaerica)
TGATCATCAATAAAGTGTTTGGTTTGGAAAGTGATAAAAACTGACTTCAT
TCCATTTCTTTTAAAAGGTATGGATTTAACACTGCATTTGACAATTAACT
GATTAATTTTGAGGTCTCTTGTAACGGTGGGTAGACTTACTGCTCCAGTT
CTAACACTGCATTTTTGCCCTGCATTTGACAATTAATTTCAATTAGCAAC
TTCTACCCCTGAGGTCTCTTGTAACGGTGGGTGGACTGTTCCAGTTCTAG
TCTGTTACTCCCCCTGTGGACGACATCGATTTTTTCTAAAATAAAATGTG
AAAAAAAACTTGAATGTAAGGCGAAACAAAAAAAATTTCTTGTTTCCGGA
AACCGGCCGGGTGAAAAATTTTTTTTTTTCTGACCCGGCCGCAAACTTTT
TTTCAGCATTGGATCAATTTTGGGAAAAAAACTTTTTTTTGAAAAAAACT
TTTTTTATCTTTTCTTGCAAAACATAAGATTAGAAGAGTTAAAGAGATTT
AGTTACGCATTGTGTTAATCAAGTTACTTATGTAAATAAAGAGAAGACAT
TTGGTAAATAAAGAAAATATTGAGACGTGAAGAATTTATATAAATAGAAT
ACCCGTTGTTTGGTCTGTACGTTAACGTCCGAAAACAAGAATAAAAGAGA
AAATGTTTTGAAAATATTAACGAAAAGTAATCTTCTCTAAAGCGGTAGTG
GGATAGTTGTGTGTAGTGTGAGAGGAAATCTTATAGTATCAAAGTATCAG
TCATGCAATATGGATTTACAAGCTGTTATAATCAATGTTAAAACAACTGA
TGTGAATGGAAAACTGCAAGTAAATGTTCACAACCGAATTAAAAGAGTGC
ATCCTTTGGAATCTTTTAAAAGTATTCTTCGTTCTGTCTATTCTTTCTAT
GTCAGCGAAAAGGTTGAAGTACGGGTTTCCAGTACAAATGAACGCAAAGA
AGAAGCTTCTATCGATTATGAGGAGACTTTAGCTTTGGCTAACGAGATAT
TTACAGTTAAAACAATAAGTTTTAATATCATTGAAAGTAAAGACGAAACC
AGTGAAGCAACGTTAGAGAAGAGAAAGCAAAGAACCGTCAACGAAGCTTT
AATGGGGAAAGACCTACCAGTTCTTCTGAAGACATTACCAGAAAAAGATA
AGAAAGATGCATTACACAATGAATTAGTTCGCGATTTGCAAAGGGAACCT
TTCCTCGCTGGAAGGGCCTCACAGGAGGAAGGCCAAAAAGCTATACGCGA
TATAAGCAATGCTTTATGGTATTTGGATGGACGATCCAAGACAATTAATG
ACGCATCGACAAAGAGATCACAAGTTACATCCGTCCCTGCAAGGTAACTT
TCGTAATTATTTTAGAGTGCAAAATTAGGCTAAAACAAAATAGATTTTCA
AAGAGCCTTTAAGAATCCCATCAAAACACGGTGGATTGAAACTGAATAGG
CAATAGTCAACTACATTGAGGTACTGCCTGACTCAACCTAATGGAGAACG
ATTATATCTTGTTTACATTTTCAGATTTGCTAAGTATCAAGGTTACCAAA
ATTGGGAAAAATGGAAGAAGAAGCCAAGACTAGAAAAAGAAAAATGTCAT
CAATACGCAGGTAATAACTCTCGCTGATTTTTATTGTGATCAAGTATTAA
GTATTACACCCCTTTGGTATGAGCTTCTTAAGTTTACTTGTGCTACATTT
CATATTTCGTCATTCTACCTTCCAATCCCAAACAAGTTTTTCTTTGCATT
ATTCAGCTGCTCTTGTTGAAACTTTGGAAAGACGGTGTATTATATGGCCT
CAAGACTGGAAAAAAGACATATTGGACCTAGCGGCTTCGCTGTCATCTTA
TGGAAACGAGTTAGCTAAAGCAAATGAGGAGCAACAGACGAGGCAGTCAC
AATTATATCCACAACGGGATGTAAGAATTTCAATCTACCGTAAAAAGCTT
TTTCTAAGAACAATTCTATATGATCGTAATCGCTTAATAAATTCGGCTAA
AATATGATAACAATCTGAGCATGAGCCACAGAAGATACTAAGAAAGTACC
GCGATTTTAAACCCATTTTTAGTTCTTAAGTGAATAATCTTAGTGCATTA
AGAAATTCTTATGACCATTTCAAATTGAAATTTTTGAAAAAATAAGAACA
ACATTTACTGGTTCTTATAAAAATGCATGTATGGTATTTGCTTGAATGTT
GTTTCATCCTTTTTAATTTCTTTTTCTTTTTTTGCTACAGATTTCGAAAA
ATGCGTCATTTCAATATTGGCCTTCCGTCCAGAAAATCAATGTTTCAAAG
AATCTTAAACGTTTGTCAGCGAAACTATTTGATCTAAATGAAAAGGAGCC
AGTAATGATAACAGAAGAGGATTTTGACGAGAACCTCTCCCGATTTGATC
AATTAGCAGCCATAAAAGAAATAGCATTAGAAGTGCCCTGCATATCTCTA
AGGTATGACCACAAGATGATTATCGCTCTTTATTTTATAAGACAAGAGCT
GTTTCTCACGAAATTGTTTCCTTTACCTTTCATAATCACCTGCTAAATGA
AAAATCGGAGTCTCTCATTTTCATTTTCATTTTAAGGCAAACAAAGTTAT
AATTGAAACAGATCGATTAATTTCCTATTTTTCAGATATGATCCAGGTGG
TGGTGCAAGTGTTCTTCATTTTATTCAAAAAGTTCCGAGGTTGTTCGACG
ATTCTGATCGAATGAATGTTGCAGTAGAGATGTTAAAACTACTTGAACCT
GAAATTCCCATTTTCCACACACGTGCAATGAGAAAAAAGTTCCACAAAGA
GGTCAAACCACTAAACTCTGCAACTCCGCCTTATTTGATAAGACACGTTT
ACCGCACCCTGACCGGTGATGCAAGTGCTGAAGTGACAGAAATTGAAATC
GACGAGAAAGTAAAGTTGGCCATAGAGACTGAGGACCCAGATTTGATTAT
TGATTTGAGAAACCTCAATAAAGGAAGACCCGCTGATACATTCAACGAAT
TTTTCAACGAACTCGAGAAAATTGTCGAGGAAATCACAGCTGCAGACGAA
AGAAGGCACGGCGTGGCTCACATGAGCGAATTCTTGAGTATTCAAGATTT
GATCAAACAAGTCAAAATGCGCTTGCCAGAAGATGCCAAGATTCCGTCAG
AATCAACAGTAATTCACTCTTTTTCACCCCCTAACCTACACAAGAAAACA
TCAGAATACTACACTGGTCGTATCAATCTAAAGCATACAATACAACGGAG
ACAGCTACGTGCATACCATACTGATGCTCACTGGTGTTCGGCTTTGTATC
GGTACATGCGTGAAATGGCCATACTTTCTCGCAAGAATTCTGTATTCCTC
TCTTGTGATGATAAAGCCAAGGTTGATTTTGGCGAACCTGGCTCTGCTGT
TTCTACTGGCGTTCGTGGTAGAAGAAGCATTGTTCCGTCTACATCACTTC
TTGGAGCCCTTGATCATGATGTTAATCAAAAAGGTAAAGATACTGAATAA
TCTTCAAAATTCATTAATTCATTAAGACACCCTGAGGTATTAAGTAATTT
AGGTTGAAACCTTCTCCTTGATAGAAACTTAACAGGAAGCTCTATTCAAA
CTTAACTTACACTATTTATCTTATAGGGAGTCTGATCCCATCGGTAACTT
TGATCACAGATGTACCAAGTGATATTGAAGAAAGTTTCTACCGTGGACAA
GTGGCTGTAACGTTAAAAGAGAGCGTGTTCCAACCAAGCTCGAGTTTTCG
AAGTGTTCTTGAAATTCAGAATTCATTGCTCGACAATGGATTTGACAGTA
CAAAAACACCTAACATTTTCATGATGGCTGACGGTGGTCCCGAGCATCGG
GTAAATTTTGAATCGGTCAAGATACCACTCATATTGATGTTTAAAGCTTT
GCAGCTTGACTCTTTGATTGCTATTCGAACAGCACCGGGTCAAAGTTACC
TTAACATCGTCGAAAGAATCATGTCCATTCTGAACATCGGCTTCCAGAAC
GTTGCATTGGAAAGGATGGAATCTTCTTCTGATAAGGAAATAAAGAAGTG
TAAGGATCTATCAGACTTGAGAAAGAGACAAGAAATCAAAGAAGATTGGC
AAAACTCCGTCAAACCAGTCATTGAAACATTGGAAAAACGCACCAAAAGG
CTTGCCTTAAAAGAAGTACCTTTCAAAGTAAGAAACTTGCACATTTCTTC
CAGGACATGTATAAGCTGTTCTCTTGACCAAATATGCTTTTCTTCTCAAG
TTTACCCAATCTTTTACCAAGTAAGGTTTTTCTATGTACTTCAGGTTCTT
GATGCCGCTTCAGATGATTCAATCAAAGACTTCATCGAAAGTGCTGCAGC
TATTGACGTTTCATTACCAACAAAAATCAACAGCAAAAAGATGACAAAAG
TAGATCTTAAATCTTGCGATGATTACCAAACCTTTAAGAAGAATCACTGC
TTTGAGGCTCATTATTCTTTTCAAGTAAGGAATTCATTATAATGATTGGC
ACCAAAGTTATAATAATATTTATATTTCAGGATCCTTGAAAATGTTTATT
TATCAATTATAATGCCCAGACCAGTCACCTTTATCATATCAATTTCTTTC
TTTCTGTTCTAGATTCGACGCTGTAATGATCAAAACTGTTGTCCAGGTGA
AGACATGAAAGAGTTTAAATGGCTACCGTTCCCAGTTCCTGACCCGAACA
ACACCGGGCATTACAAGAAGTTTGAAGATTTATACGGAGAAGAGCCAACA
GAAGAGCACATGCCGTCGAATGTGAATAATGTTCGTAAAGTTTCAGAGCT
TGAGCAAGTGAGTGAACATTCCTGGAGAGTCGTTTCAGTATTTCGTTAAC
ATGGTAATCAAAGAGATAAAGTAAATCTAGACTATCTATTTGCCATCTTT
TGTCGGAATTCATAAGTTTAAATCATGAAAACAAAAGCTAATTATTATTA
ATTATTACTAGTTATTACAAACCATTTCTTTTTCTAGGGATGCAAGAATA
GCTTGATGACAGGCCAGAATGTTAGAGACACGTTTAATTGTAAATCATGT
TCAAAACCTCGATGCATCTACACAAGCAGAGCACTCAGTGACCGAGAAAA
GGAGGAGTTGAAAAACGTAAAACGAAATTATGATTACGTGTGTGGCTGTT
TGATCACACCAGAAGTCTCCTATCTTTCTGGGGAAGTTTTTACGAGACTT
GAGATGCACTGTAACACACCAGTCGAATGGGCATACTACAGTGCGACGAA
GATTCCATTGAAGAAAGACGTATGCTGCCACTGGTCGAGACCTGGAGCGA
CAGTTGACAAAGAAACCAAAAAGGCTTACAAAACCGTCTTACCGATTTGC
GAGACGTGTAAAGCTGAAGGCAAGAAAACCATTACGCGAGGACCGATCAA
AACCGCAAAAGGAAACAAAGCCCGTGCAAGACAATCTAAAATTTAATAAA
CTTGTTGGACGCGTTTGCAACTACCTTTTAAAAGTTTTTGTTATCTTTTT
ACCGCATTTTCTTTTGAAATACATATTAACTAGATACGTTTCATCCATAA
ATCAAGCTAAACGCTTTATGCCATCATTTGCTTAGATATTTATCCGCTTA
TAAATCAAGTTTCGTTCGTTAGTAGTCCGTACTTGTTGTAATTTAGGGCA
TAATTTATGCTGTGTTTATACATAAAAGTTATTCTTAAACTCTATTTCAA
TGAGCCATAAATTATCAAAAATGGCAAAAAAAAATTATTTTCCGGCCGGC
CGCATGATAACTTTTTTCCTTCACCCGCATTCCGGAAACAAAACAATTTT
TATCATTCGCCTAAGAGCGGTCCAATCGAATACAATACACCGTTTAGGAG
TCTCGCTATCTTCACGGTACTCCATTGCAGAGGCCAGTAAAAATGGTAGG
TAAAAATGCGCACTTTAGTACTGTGAAAGGTTAGAGGAATGTAAACATTG
TGAATTTTTTTCTCTCCTTTAAAGAGAATGATTTAGATATTTGAACATGA
TATCAATGATAATTTTATAAGTCTCTCCTGAAAATTTCACAAATATTCAT
CAACAGGAAAAGAAGTTATGATTAAAAGGAGTTCTTTACCAACTGTTTTT
CTGCTATGTTTCCTTATGAGAACCAGATGTTTACCTACCGTTTTTTTACG
GAGGAGAGTGAATTTTCCGTGGTCGCTAAAATCAAAACAATGGAAAATTA
GATTGACGCGTGCGCAGTCGACACTCCTAAACGGTGTATTGAATCAATCG
AACGCAATTGAACATAATCGAATACAATTGAATCAATCGAAGCAATCAAA
CGGCAAATCCTGGGTAATATTTGATTGCGATTCGATTGCGTTCAACAATA
GAATCGTAATTATTCGATTGCGTTCAATTGCGTTTTAATTTATTATTCAA
TTTATTTATTCAATTTATTATTATTCAGGGGTCTGGTTACTAACGTCAAT
TTTCATCTGGTTACTAACATCAATTTTCATTCACAACGTGAAGGCTTCTT
TACCGTTTCCCTGCACATCATCTTTGACGCAGGGGTTTTATTGTTGCATT
GCGTAAAAGTTTCCTACCGTGGTGTTCGAATTATAGGAAAAATAGAGGAA
GAAATAAACTAGAAAATGTCACTAACGTTTTAGTATATATGATAAGGTAG
CAGATTTCTGATCTGGGGCATAATCTATGAAAAAATGTCTACCCTATGGA
GATAGTCCTTTATTTTCAAGCAGATATTAGTATATATGATAAGGTAGCAG
ATTTCTGATCTGGGGCATAATCTATGAAAAAATGTCTACCTTGGAGAGGG
TTTATTTTCAAGCAGATAACAATAATAATTTTTTTGTTTCTTTACAGTTT
CCATATCTGTTCGATCAACCCTAAAGACACTGGTAACAGAAGATCTTACT
TAACTGGTACCCAGTTTTAAGGTACATTTTATCATTTATTAGGGTTCAGA
AAAAAAAGTTAACACATGCAAACAGTTACATCATTATGCCAAAAACATTT
TGTTCAACCACCTTCACTTCAAGATAGGCCACCATAGAATGAACGACACG
TTTGTTAAATTTTCTAAAATTTTCCATCCACAACGGTCCTTATTAGGATC
ACCACGTTTATTGATTTTTGAAAATATTTTCAGCTGCCAAAAGGAAAGTC
CCTTATTTTGATCCAAATAGCCTGATTTTACCCTGTATTTACTCTATTTT
GGAATTTTTCAGAAGTACAATTTCTCAGGCCCGGGAAGTTTTGAAAAAGT
TCAACCCCCAAGTTTATTTTGTTAAGCACCTGAGAATACGCATAAAAGTT
TTCTATTTTTAGTTAGCAGATTTCTGATTGGCGTAATCTGTGAAAAATGT
CTTCCCTGGGGAGGGTTTATCTTCAGACATAATAATTTTTTTCGTTTTTT
TTTTTTACAGTTTCCTGATCTNTACGCATAAAAGTTTTCTATTTTTAGTT
AGCAGATTTCTGATTGGCGTAATCTGTGAAAAATGTCTTCCCTGGGGAGG
GTTTATCTTCAGACATAATAATTTTTTTCGTTGTTTTTTTTTACAGTTTC
CTGATCTGTCCAATCAATCCTAAAGACGCAGGCAACAGAAAATCATAACT
GGTACCCAGTTTTAAGGTACATTTAAATTTATTTATTGTATTGAGATTCA
GAAAAAAGGTTAACAGTATTAAGACCCCATTAGGTTTCCACAAATTCTCG
ATTTTGTCATGATTAGTTAGTCATAGTGCAGACCCCCTTAAAAAATAGAC
TCAAAAAGGCAAAAGAATGTGGTCTGAAAGAAAAGCCTCCTTCATAGATA
AAAGGAAAGGCAATAAATAGTAAAGGCGTTGAATCTTTATGTTGAATCTT
GGCAGTGATAAAGTTCACCAATTTTATTTTTACCTACTCCCTTTTTTAAT
TAAATATCTTAAGATTTTCAACATATAATATATAGATTTCTTTCTTTCTA
TTTTAGGTATCATTACACCCCATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072266-exon-scaffold_72-1575043694:157550..157616 | TCONS_00072266-exon-scaffold_72-1575043694:157550..157616 | Clytia hemisphaerica | exon |
| TCONS_00072266-exon-scaffold_72-1575043694:150696..150769 | TCONS_00072266-exon-scaffold_72-1575043694:150696..150769 | Clytia hemisphaerica | exon |
| TCONS_00072266-exon-scaffold_72-1575043694:150001..150070 | TCONS_00072266-exon-scaffold_72-1575043694:150001..150070 | Clytia hemisphaerica | exon |
| TCONS_00072266-exon-scaffold_72-1575043694:149643..149660 | TCONS_00072266-exon-scaffold_72-1575043694:149643..149660 | Clytia hemisphaerica | exon |
| TCONS_00072266-exon-scaffold_72-1510915933:157550..157616 | TCONS_00072266-exon-scaffold_72-1510915933:157550..157616 | Clytia hemisphaerica | exon |
| TCONS_00072266-exon-scaffold_72-1510915933:150696..150769 | TCONS_00072266-exon-scaffold_72-1510915933:150696..150769 | Clytia hemisphaerica | exon |
| TCONS_00072266-exon-scaffold_72-1510915933:150001..150070 | TCONS_00072266-exon-scaffold_72-1510915933:150001..150070 | Clytia hemisphaerica | exon |
| TCONS_00072266-exon-scaffold_72-1510915933:149643..149660 | TCONS_00072266-exon-scaffold_72-1510915933:149643..149660 | Clytia hemisphaerica | exon |
| TCONS_00072266-exon-scaffold_72-1491911889:157550..157616 | TCONS_00072266-exon-scaffold_72-1491911889:157550..157616 | Clytia hemisphaerica | exon |
| TCONS_00072266-exon-scaffold_72-1491911889:150696..150769 | TCONS_00072266-exon-scaffold_72-1491911889:150696..150769 | Clytia hemisphaerica | exon |
| TCONS_00072266-exon-scaffold_72-1491911889:150001..150070 | TCONS_00072266-exon-scaffold_72-1491911889:150001..150070 | Clytia hemisphaerica | exon |
| TCONS_00072266-exon-scaffold_72-1491911889:149643..149660 | TCONS_00072266-exon-scaffold_72-1491911889:149643..149660 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| scaffold_72 | supercontig | scaffold_72:149643..157616 - |
Blast
The following BLAST results are available for this feature:
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