TCONS_00072253 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072253
Unique NameTCONS_00072253
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length289

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072253 ID=TCONS_00072253|Name=TCONS_00072253|organism=Clytia hemisphaerica|type=transcript|length=289bp
CTGGATGTGTACTCCAAAGACGATCTTGGCAACACCTTCCCCATTCTATG
GATGAATCTGATTCAACCAAATTGCTCCTTGAATACTGTTGAGAATCTCA
ATTGTAGTTTGACAATCCAGAATGTCAATATTCTAATCTCCAAGAAACCA
GCTGATGAGGTTTCAAAAGATCAACCTTTTCCGAGTCAAGAGGATTATGA
CCAAAGCCTTGTATCTTGTACTGAACTGCCGACACATTCGCACCTTCCTG
CTCCGTTCCTTAAAACCTCTCTCGTCCTCTCATCTTCGG
Run BLAST on NCBI

transcript from alignment at scaffold_71:1101415..1101703

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072253 ID=TCONS_00072253|Name=TCONS_00072253|organism=Clytia hemisphaerica|type=transcript|length=289bp|location=Sequence derived from alignment at scaffold_71:1101415..1101703 (Clytia hemisphaerica)
CCGAAGATGAGAGGACGAGAGAGGTTTTAAGGAACGGAGCAGGAAGGTGC
GAATGTGTCGGCAGTTCAGTACAAGATACAAGGCTTTGGTCATAATCCTC
TTGACTCGGAAAAGGTTGATCTTTTGAAACCTCATCAGCTGGTTTCTTGG
AGATTAGAATATTGACATTCTGGATTGTCAAACTACAATTGAGATTCTCA
ACAGTATTCAAGGAGCAATTTGGTTGAATCAGATTCATCCATAGAATGGG
GAAGGTGTTGCCAAGATCGTCTTTGGAGTACACATCCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044865XLOC_044865Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072253-exon-scaffold_71-1491911889:1101415..1101703TCONS_00072253-exon-scaffold_71-1491911889:1101415..1101703Clytia hemisphaericaexon
TCONS_00072253-exon-scaffold_71-1510915933:1101415..1101703TCONS_00072253-exon-scaffold_71-1510915933:1101415..1101703Clytia hemisphaericaexon
TCONS_00072253-exon-scaffold_71-1575043694:1101415..1101703TCONS_00072253-exon-scaffold_71-1575043694:1101415..1101703Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_71supercontigscaffold_71:1101415..1101703 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.441492	0.861049	0	0.489055	2.97688	3.29332	3.40565	6.37665	1.11611	2.30414	0.894581	1.17613	0.880868	0	0.501388	0.807099	2.98284	1.69851	0	0.491105	0	0.624622	0	0.460215	7.58417	5.07652	0.605373	0.646071	0	0.99851
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072253 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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