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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072252 ID=TCONS_00072252|Name=TCONS_00072252|organism=Clytia hemisphaerica|type=transcript|length=1578bp
CTTTCTTTTAAATCTGACAAAAGCGTAACAGATACTTTCTTTAGAAGATA
ATATACTAATTGCAGCAGTATATGCTATATAAATAAGATTCAAGATATTC
CAAGATATTTTGTCAAGCTTTTTGGAAGGCGCTCCTTCAAGAACGAGGTA
TTGAAATATTGTAAACAAGCCACTCTGGTTAGGTCCTTCAAACTGCACTC
TTCCATTTGTATTTTTGTCACTATCAAGGTTTTCTCATCTAAAACGGCCA
ACTCTTTCATGCTCCAGTTAAAATCATAAGCGTCAATCCGTCTCCACCCC
TCACTGAATGTTTTTTGGACGTCAGTTTTCAGATTGTAGCTCCAGATGTG
ATAATTCGTATGTCCTTTTTCTGCGATTGCAGAAATGTATTGCTCGTTAA
ACGCACAAAAAAGTCTGAAAGAGGTTTTCCAATTCCATGTTGGAAGTTCG
ATCACTTTCACCAATTGACTTGTCTCTTCAGACacgttaaatattttcaa
acaggATGGTGTATCGTGAATATCGTTCCAGACTGTTAGAAAGAAGCATT
TCTCAAGAGGAGTTACGTCACTTATGAGCCTTTGTTCGTCGTCCCATTGC
GGGATATTTAGTTTGCAATGGTTGCCATTGAAATCAAAGGCGTCGAAAAA
TACGTCCGTTGAATCGTGCCGAAGTTGAATTTTCTTTAAGTAGACTCTTT
CTAGATCTTCATTCAAGTATACATCAGCAAATCTAAAGGTGAAACATGTT
GTAAGTGTGATACGTTTGAAAGGCGTTATATGTTCGTCGTCAAATTTCAC
CAAATCGATTAAATCGATTAAAGGCGATTGCAGCTCTGTCATGATGACCA
AATAGTTGTTCTTAATCCTGACATAGATACCTGTCGGTGTGGACGGGTAA
TTGATTTCCAATACATCATGGCTGTTAGTGACTTCATTGACAATAATCCT
CGTTGGTCTACGCAAGTATTTCCTTAAAGTTTCACTGGCGATATTCAAGA
CCTTCTCACTTTCGAATATCACAACTGAGAACCAACGAGTTGTTTTCGGA
TCATATTTGATACAGCAAAAAAACCAGCTTGTCAAatttctaaaatcaaa
tctcACACTACTTCCTAAAATCTGCCGCGATTCTTTATCAACATTATACA
TGAATACAGCAGTATGAATAAAGAGCCCATGATTCACGTCGTTACTCCAT
TTTTTTAGATCTCCTTTTCCATCCCTCATTGCTCTATTATCATATCCTTG
TTGATAAAATGTACTGAAAATTCGATGATCAGCTTTGCTGCTAAATCCAC
AATTTAATCTATTCAATTGTGCATGAAATCTTTGTAAACTGTTATGCAGA
TTGTCTGTTTCCAAACTCCAAATGTCACGTGGGAGAAAAAAGCCTGATAA
ATTTTCTTCGTCCATAGTTTGTCGCTACCTTCGGTGATAATCTTCTGTAC
TATAGATAAGTAAAGTCACTGTAAACTCAGAAAAACGTTCTTAGTTTATT
GACACATCATATTTATAGACATTGTAAGTCTGTTGTGGCTTGGTTTACAA
GATTTTACTTTTAGCTATACGATTCAAG Run BLAST on NCBI protein sequence of TCONS_00072252-protein >TCONS_00072252-protein ID=TCONS_00072252-protein|Name=TCONS_00072252-protein|organism=Clytia hemisphaerica|type=polypeptide|length=441bp
MDEENLSGFFLPRDIWSLETDNLHNSLQRFHAQLNRLNCGFSSKADHRIF
STFYQQGYDNRAMRDGKGDLKKWSNDVNHGLFIHTAVFMYNVDKESRQIL
GSSVRFDFRNLTSWFFCCIKYDPKTTRWFSVVIFESEKVLNIASETLRKY
LRRPTRIIVNEVTNSHDVLEINYPSTPTGIYVRIKNNYLVIMTELQSPLI
DLIDLVKFDDEHITPFKRITLTTCFTFRFADVYLNEDLERVYLKKIQLRH
DSTDVFFDAFDFNGNHCKLNIPQWDDEQRLISDVTPLEKCFFLTVWNDIH
DTPSCLKIFNVSEETSQLVKVIELPTWNWKTSFRLFCAFNEQYISAIAEK
GHTNYHIWSYNLKTDVQKTFSEGWRRIDAYDFNWSMKELAVLDEKTLIVT
KIQMEECSLKDLTRVACLQYFNTSFLKERLPKSLTKYLGIS Run BLAST on NCBI transcript from alignment at scaffold_71:1089421..1090998 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072252 ID=TCONS_00072252|Name=TCONS_00072252|organism=Clytia hemisphaerica|type=transcript|length=1578bp|location=Sequence derived from alignment at scaffold_71:1089421..1090998 (Clytia hemisphaerica)
CTTGAATCGTATAGCTAAAAGTAAAATCTTGTAAACCAAGCCACAACAGA
CTTACAATGTCTATAAATATGATGTGTCAATAAACTAAGAACGTTTTTCT
GAGTTTACAGTGACTTTACTTATCTATAGTACAGAAGATTATCACCGAAG
GTAGCGACAAACTATGGACGAAGAAAATTTATCAGGCTTTTTTCTCCCAC
GTGACATTTGGAGTTTGGAAACAGACAATCTGCATAACAGTTTACAAAGA
TTTCATGCACAATTGAATAGATTAAATTGTGGATTTAGCAGCAAAGCTGA
TCATCGAATTTTCAGTACATTTTATCAACAAGGATATGATAATAGAGCAA
TGAGGGATGGAAAAGGAGATCTAAAAAAATGGAGTAACGACGTGAATCAT
GGGCTCTTTATTCATACTGCTGTATTCATGTATAATGTTGATAAAGAATC
GCGGCAGATTTTAGGAAGTAGTGTgagatttgattttagaaatTTGACAA
GCTGGTTTTTTTGCTGTATCAAATATGATCCGAAAACAACTCGTTGGTTC
TCAGTTGTGATATTCGAAAGTGAGAAGGTCTTGAATATCGCCAGTGAAAC
TTTAAGGAAATACTTGCGTAGACCAACGAGGATTATTGTCAATGAAGTCA
CTAACAGCCATGATGTATTGGAAATCAATTACCCGTCCACACCGACAGGT
ATCTATGTCAGGATTAAGAACAACTATTTGGTCATCATGACAGAGCTGCA
ATCGCCTTTAATCGATTTAATCGATTTGGTGAAATTTGACGACGAACATA
TAACGCCTTTCAAACGTATCACACTTACAACATGTTTCACCTTTAGATTT
GCTGATGTATACTTGAATGAAGATCTAGAAAGAGTCTACTTAAAGAAAAT
TCAACTTCGGCACGATTCAACGGACGTATTTTTCGACGCCTTTGATTTCA
ATGGCAACCATTGCAAACTAAATATCCCGCAATGGGACGACGAACAAAGG
CTCATAAGTGACGTAACTCCTCTTGAGAAATGCTTCTTTCTAACAGTCTG
GAACGATATTCACGATACACCATcctgtttgaaaatatttaacgtGTCTG
AAGAGACAAGTCAATTGGTGAAAGTGATCGAACTTCCAACATGGAATTGG
AAAACCTCTTTCAGACTTTTTTGTGCGTTTAACGAGCAATACATTTCTGC
AATCGCAGAAAAAGGACATACGAATTATCACATCTGGAGCTACAATCTGA
AAACTGACGTCCAAAAAACATTCAGTGAGGGGTGGAGACGGATTGACGCT
TATGATTTTAACTGGAGCATGAAAGAGTTGGCCGTTTTAGATGAGAAAAC
CTTGATAGTGACAAAAATACAAATGGAAGAGTGCAGTTTGAAGGACCTAA
CCAGAGTGGCTTGTTTACAATATTTCAATACCTCGTTCTTGAAGGAGCGC
CTTCCAAAAAGCTTGACAAAATATCTTGGAATATCTTGAATCTTATTTAT
ATAGCATATACTGCTGCAATTAGTATATTATCTTCTAAAGAAAGTATCTG
TTACGCTTTTGTCAGATTTAAAAGAAAG Coding sequence (CDS) from alignment at scaffold_71:1089421..1090998 >TCONS_00072252 ID=TCONS_00072252|Name=TCONS_00072252|organism=Clytia hemisphaerica|type=CDS|length=1326bp|location=Sequence derived from alignment at scaffold_71:1089421..1090998 (Clytia hemisphaerica)
ATGGACGAAGAAAATTTATCAGGCTTTTTTCTCCCACGTGACATTTGGAG
TTTGGAAACAGACAATCTGCATAACAGTTTACAAAGATTTCATGCACAAT
TGAATAGATTAAATTGTGGATTTAGCAGCAAAGCTGATCATCGAATTTTC
AGTACATTTTATCAACAAGGATATGATAATAGAGCAATGAGGGATGGAAA
AGGAGATCTAAAAAAATGGAGTAACGACGTGAATCATGGGCTCTTTATTC
ATACTGCTGTATTCATGTATAATGTTGATAAAGAATCGCGGCAGATTTTA
GGAAGTAGTGTgagatttgattttagaaatTTGACAAGCTGGTTTTTTTG
CTGTATCAAATATGATCCGAAAACAACTCGTTGGTTCTCAGTTGTGATAT
TCGAAAGTGAGAAGGTCTTGAATATCGCCAGTGAAACTTTAAGGAAATAC
TTGCGTAGACCAACGAGGATTATTGTCAATGAAGTCACTAACAGCCATGA
TGTATTGGAAATCAATTACCCGTCCACACCGACAGGTATCTATGTCAGGA
TTAAGAACAACTATTTGGTCATCATGACAGAGCTGCAATCGCCTTTAATC
GATTTAATCGATTTGGTGAAATTTGACGACGAACATATAACGCCTTTCAA
ACGTATCACACTTACAACATGTTTCACCTTTAGATTTGCTGATGTATACT
TGAATGAAGATCTAGAAAGAGTCTACTTAAAGAAAATTCAACTTCGGCAC
GATTCAACGGACGTATTTTTCGACGCCTTTGATTTCAATGGCAACCATTG
CAAACTAAATATCCCGCAATGGGACGACGAACAAAGGCTCATAAGTGACG
TAACTCCTCTTGAGAAATGCTTCTTTCTAACAGTCTGGAACGATATTCAC
GATACACCATcctgtttgaaaatatttaacgtGTCTGAAGAGACAAGTCA
ATTGGTGAAAGTGATCGAACTTCCAACATGGAATTGGAAAACCTCTTTCA
GACTTTTTTGTGCGTTTAACGAGCAATACATTTCTGCAATCGCAGAAAAA
GGACATACGAATTATCACATCTGGAGCTACAATCTGAAAACTGACGTCCA
AAAAACATTCAGTGAGGGGTGGAGACGGATTGACGCTTATGATTTTAACT
GGAGCATGAAAGAGTTGGCCGTTTTAGATGAGAAAACCTTGATAGTGACA
AAAATACAAATGGAAGAGTGCAGTTTGAAGGACCTAACCAGAGTGGCTTG
TTTACAATATTTCAATACCTCGTTCTTGAAGGAGCGCCTTCCAAAAAGCT
TGACAAAATATCTTGGAATATCTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072252-exon-scaffold_71-1491911889:1089421..1090998 | TCONS_00072252-exon-scaffold_71-1491911889:1089421..1090998 | Clytia hemisphaerica | exon |
| TCONS_00072252-exon-scaffold_71-1510915933:1089421..1090998 | TCONS_00072252-exon-scaffold_71-1510915933:1089421..1090998 | Clytia hemisphaerica | exon |
| TCONS_00072252-exon-scaffold_71-1575043694:1089421..1090998 | TCONS_00072252-exon-scaffold_71-1575043694:1089421..1090998 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_71 | supercontig | scaffold_71:1089421..1090998 . |
Blast
The following BLAST results are available for this feature:
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