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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072247 ID=TCONS_00072247|Name=TCONS_00072247|organism=Clytia hemisphaerica|type=transcript|length=2037bp
GATAAATCTAAGAATTTGTGTGTACGGTTTTCTTCTGTCTTTATTCTATG
AGCTCCTATATACTACTAATTCCTCCAAGGAGCTGATAGCTATATCAACA
ATCTTGCGCATAATGATGCTCAATGTGTGTTGATATCCGCTAGCAGAGCT
AACAACCCCGTTGaaaaaaaaaatgttccacATTTACTCCAAATaaaatt
ctctaaaataaatattaaataattttttttttttactagtTCCCTAATGG
TTCAATGTTTCCTAGAAATAAAATATGCACTTttaatcaaataataaaat
actacaattttgttttctgtgttttctttttaatgtaTTATACGTCTTTT
TACCATTGATAATGTTTCAATAATTCAAATTGTTAATTAAATCATCAGTG
TCAGAAACACTTGATCTTCGGATAGAATGGGCATCAATTTTCAATGCGAT
GGAGGGTAGCTAATTTCTTGGTTAAttttctatcttttattgtccaTGGC
AATATTATCTAATACACAGTATCTCATGTTTGGCGACTCAAGTATTCTTC
ATCTTCGTCATCTTTGTCAGAAGATTCTTCTAATCACTAGTATTGGTGTT
GAGCAGCGGGCGAGGGTTATACGACTGTGTTTGCCTTACTTTGATCAGCa
aacattttcttgaaagcTGCAACAATTTGATTTCCTTCGGTTGATTGCcg
ctgttgtttttttttggataaaCTTTCTGTTGAGCTCTCAGATTCTTCGA
TTACTCATTTTACTATACATAACTTCTGTATGATTGAATGATCGGTttga
aaatgtttgtttgtttaaaaacaATTGCTTTGTTTTTTAACCTTTGTTGA
GGTTTTTTTCTCATAGCTTGTGTTTACCCCATCTTGGGTATATTGTGGta
atttcatttgtttattgCTTGTTTGGCTCACATGCTGCATTGCTTGTTGC
TTTGTTTTGGCTTATTTCTTCTGTTTGTTGATGATTTATAATATGCCATT
TAACTCCTTTGCTGCATAGATGGTAGATACTGTTTCTTTCACGTTCTTTT
GACGATATAAGAATTTCTTTATCATGCCCTTTTtgattttccccgatttt
tagAACAGCATCACATCAAATTTCGATGCTATGGTTTCCTGACCATAGGT
TAAATGTCTTTTGTTGAATTAAATGCATGTTTCACCTTACTTCTTAGGAA
TCTGATAACGCATTACTATCTCGGAAAACTATTACTGCGTTGCGTCTTAC
AACCATGGATCAACTTAGCATTCCTCTGTCGATGCAATCGTTTTTACTGC
GATGTAACCATGGGCAGCTTCTTCATAATGTTTCGTTATGTTATTCTGTT
TTCTCAGTGAAACCATGCCTTTCTTCACTTCAGATAACCTTGACCATCAA
ATTATGTCTCTCAGGACATTTTTAACCATAGTTATTCAATAATGTTCTTG
TGTATCTCTCAGGACAAGTTTAAAGACATACTTTCAGGATTCAGGACGTG
TATAACAATACAATTTCTTCATCGTAACCCTGACATGGGAAGCTTCCGGG
TACTGACCTTGCTCAAGGGAGCCCGGGATCAGTTTAGCGTCATGTTCTGG
ACGTTACGACTTCAATAAATCATATCAATAACATAAACAATGTCAATGAA
TCAATGCCAAGAAACTTCGAATAGCCATATCAACTCGATGTATAATTTGA
CTATTTCAATTATAAAATATCTCAAATATTCCATGCAAATGTTTCACTGT
TTTGTTTATCTTTATAGCTCTCAAGCTAAATCTCGAATCCCCAGAACAAC
ACAGCAAATACCAAATCCTTTAAGATCTCGGTAGAACCTCCATTTGTTAG
CCTTGTGAGCTAACAAAGTGTTGTTCTGGGGGTGCGATAAATCTAAGAAT
TTGTGTGTACGGTTTTCTTCTGTCTTTATTCTATGAGCTCCTATATACTA
CTAATTCCTCCAAGGAGCTGATAGCTATATCAACAATCTTGCGCATAATG
ATGCTCAATGTGTGTTGATATCCGCTAGCAGAGCTAA Run BLAST on NCBI transcript from alignment at scaffold_71:958426..960462 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072247 ID=TCONS_00072247|Name=TCONS_00072247|organism=Clytia hemisphaerica|type=transcript|length=2037bp|location=Sequence derived from alignment at scaffold_71:958426..960462 (Clytia hemisphaerica)
TTAGCTCTGCTAGCGGATATCAACACACATTGAGCATCATTATGCGCAAG
ATTGTTGATATAGCTATCAGCTCCTTGGAGGAATTAGTAGTATATAGGAG
CTCATAGAATAAAGACAGAAGAAAACCGTACACACAAATTCTTAGATTTA
TCGCACCCCCAGAACAACACTTTGTTAGCTCACAAGGCTAACAAATGGAG
GTTCTACCGAGATCTTAAAGGATTTGGTATTTGCTGTGTTGTTCTGGGGA
TTCGAGATTTAGCTTGAGAGCTATAAAGATAAACAAAACAGTGAAACATT
TGCATGGAATATTTGAGATATTTTATAATTGAAATAGTCAAATTATACAT
CGAGTTGATATGGCTATTCGAAGTTTCTTGGCATTGATTCATTGACATTG
TTTATGTTATTGATATGATTTATTGAAGTCGTAACGTCCAGAACATGACG
CTAAACTGATCCCGGGCTCCCTTGAGCAAGGTCAGTACCCGGAAGCTTCC
CATGTCAGGGTTACGATGAAGAAATTGTATTGTTATACACGTCCTGAATC
CTGAAAGTATGTCTTTAAACTTGTCCTGAGAGATACACAAGAACATTATT
GAATAACTATGGTTAAAAATGTCCTGAGAGACATAATTTGATGGTCAAGG
TTATCTGAAGTGAAGAAAGGCATGGTTTCACTGAGAAAACAGAATAACAT
AACGAAACATTATGAAGAAGCTGCCCATGGTTACATCGCAGTAAAAACGA
TTGCATCGACAGAGGAATGCTAAGTTGATCCATGGTTGTAAGACGCAACG
CAGTAATAGTTTTCCGAGATAGTAATGCGTTATCAGATTCCTAAGAAGTA
AGGTGAAACATGCATTTAATTCAACAAAAGACATTTAACCTATGGTCAGG
AAACCATAGCATCGAAATTTGATGTGATGCTGTTctaaaaatcggggaaa
atcaAAAAGGGCATGATAAAGAAATTCTTATATCGTCAAAAGAACGTGAA
AGAAACAGTATCTACCATCTATGCAGCAAAGGAGTTAAATGGCATATTAT
AAATCATCAACAAACAGAAGAAATAAGCCAAAACAAAGCAACAAGCAATG
CAGCATGTGAGCCAAACAAGcaataaacaaatgaaattaCCACAATATAC
CCAAGATGGGGTAAACACAAGCTATGAGAAAAAAACCTCAACAAAGGTTA
AAAAACAAAGCAATtgtttttaaacaaacaaacattttcaaACCGATCAT
TCAATCATACAGAAGTTATGTATAGTAAAATGAGTAATCGAAGAATCTGA
GAGCTCAACAGAAAGtttatccaaaaaaaaacaacagcgGCAATCAACCG
AAGGAAATCAAATTGTTGCAgctttcaagaaaatgtttGCTGATCAAAGT
AAGGCAAACACAGTCGTATAACCCTCGCCCGCTGCTCAACACCAATACTA
GTGATTAGAAGAATCTTCTGACAAAGATGACGAAGATGAAGAATACTTGA
GTCGCCAAACATGAGATACTGTGTATTAGATAATATTGCCAtggacaata
aaagatagaaaaTTAACCAAGAAATTAGCTACCCTCCATCGCATTGAAAA
TTGATGCCCATTCTATCCGAAGATCAAGTGTTTCTGACACTGATGATTTA
ATTAACAATTTGAATTATTGAAACATTATCAATGGTAAAAAGACGTATAA
tacattaaaaagaaaacacagaaaacaaaattgtagtattttattatttg
attaaAAGTGCATATTTTATTTCTAGGAAACATTGAACCATTAGGGAact
agtaaaaaaaaaaaattatttaatatttattttagagaattttATTTGGA
GTAAATgtggaacattttttttttCAACGGGGTTGTTAGCTCTGCTAGCG
GATATCAACACACATTGAGCATCATTATGCGCAAGATTGTTGATATAGCT
ATCAGCTCCTTGGAGGAATTAGTAGTATATAGGAGCTCATAGAATAAAGA
CAGAAGAAAACCGTACACACAAATTCTTAGATTTATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072247-exon-scaffold_71-1491911889:958426..960462 | TCONS_00072247-exon-scaffold_71-1491911889:958426..960462 | Clytia hemisphaerica | exon |
| TCONS_00072247-exon-scaffold_71-1510915933:958426..960462 | TCONS_00072247-exon-scaffold_71-1510915933:958426..960462 | Clytia hemisphaerica | exon |
| TCONS_00072247-exon-scaffold_71-1575043694:958426..960462 | TCONS_00072247-exon-scaffold_71-1575043694:958426..960462 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_71 | supercontig | scaffold_71:958426..960462 . |
Blast
The following BLAST results are available for this feature:
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