TCONS_00072247 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072247
Unique NameTCONS_00072247
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2037

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072247 ID=TCONS_00072247|Name=TCONS_00072247|organism=Clytia hemisphaerica|type=transcript|length=2037bp
GATAAATCTAAGAATTTGTGTGTACGGTTTTCTTCTGTCTTTATTCTATG
AGCTCCTATATACTACTAATTCCTCCAAGGAGCTGATAGCTATATCAACA
ATCTTGCGCATAATGATGCTCAATGTGTGTTGATATCCGCTAGCAGAGCT
AACAACCCCGTTGaaaaaaaaaatgttccacATTTACTCCAAATaaaatt
ctctaaaataaatattaaataattttttttttttactagtTCCCTAATGG
TTCAATGTTTCCTAGAAATAAAATATGCACTTttaatcaaataataaaat
actacaattttgttttctgtgttttctttttaatgtaTTATACGTCTTTT
TACCATTGATAATGTTTCAATAATTCAAATTGTTAATTAAATCATCAGTG
TCAGAAACACTTGATCTTCGGATAGAATGGGCATCAATTTTCAATGCGAT
GGAGGGTAGCTAATTTCTTGGTTAAttttctatcttttattgtccaTGGC
AATATTATCTAATACACAGTATCTCATGTTTGGCGACTCAAGTATTCTTC
ATCTTCGTCATCTTTGTCAGAAGATTCTTCTAATCACTAGTATTGGTGTT
GAGCAGCGGGCGAGGGTTATACGACTGTGTTTGCCTTACTTTGATCAGCa
aacattttcttgaaagcTGCAACAATTTGATTTCCTTCGGTTGATTGCcg
ctgttgtttttttttggataaaCTTTCTGTTGAGCTCTCAGATTCTTCGA
TTACTCATTTTACTATACATAACTTCTGTATGATTGAATGATCGGTttga
aaatgtttgtttgtttaaaaacaATTGCTTTGTTTTTTAACCTTTGTTGA
GGTTTTTTTCTCATAGCTTGTGTTTACCCCATCTTGGGTATATTGTGGta
atttcatttgtttattgCTTGTTTGGCTCACATGCTGCATTGCTTGTTGC
TTTGTTTTGGCTTATTTCTTCTGTTTGTTGATGATTTATAATATGCCATT
TAACTCCTTTGCTGCATAGATGGTAGATACTGTTTCTTTCACGTTCTTTT
GACGATATAAGAATTTCTTTATCATGCCCTTTTtgattttccccgatttt
tagAACAGCATCACATCAAATTTCGATGCTATGGTTTCCTGACCATAGGT
TAAATGTCTTTTGTTGAATTAAATGCATGTTTCACCTTACTTCTTAGGAA
TCTGATAACGCATTACTATCTCGGAAAACTATTACTGCGTTGCGTCTTAC
AACCATGGATCAACTTAGCATTCCTCTGTCGATGCAATCGTTTTTACTGC
GATGTAACCATGGGCAGCTTCTTCATAATGTTTCGTTATGTTATTCTGTT
TTCTCAGTGAAACCATGCCTTTCTTCACTTCAGATAACCTTGACCATCAA
ATTATGTCTCTCAGGACATTTTTAACCATAGTTATTCAATAATGTTCTTG
TGTATCTCTCAGGACAAGTTTAAAGACATACTTTCAGGATTCAGGACGTG
TATAACAATACAATTTCTTCATCGTAACCCTGACATGGGAAGCTTCCGGG
TACTGACCTTGCTCAAGGGAGCCCGGGATCAGTTTAGCGTCATGTTCTGG
ACGTTACGACTTCAATAAATCATATCAATAACATAAACAATGTCAATGAA
TCAATGCCAAGAAACTTCGAATAGCCATATCAACTCGATGTATAATTTGA
CTATTTCAATTATAAAATATCTCAAATATTCCATGCAAATGTTTCACTGT
TTTGTTTATCTTTATAGCTCTCAAGCTAAATCTCGAATCCCCAGAACAAC
ACAGCAAATACCAAATCCTTTAAGATCTCGGTAGAACCTCCATTTGTTAG
CCTTGTGAGCTAACAAAGTGTTGTTCTGGGGGTGCGATAAATCTAAGAAT
TTGTGTGTACGGTTTTCTTCTGTCTTTATTCTATGAGCTCCTATATACTA
CTAATTCCTCCAAGGAGCTGATAGCTATATCAACAATCTTGCGCATAATG
ATGCTCAATGTGTGTTGATATCCGCTAGCAGAGCTAA
Run BLAST on NCBI

transcript from alignment at scaffold_71:958426..960462

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072247 ID=TCONS_00072247|Name=TCONS_00072247|organism=Clytia hemisphaerica|type=transcript|length=2037bp|location=Sequence derived from alignment at scaffold_71:958426..960462 (Clytia hemisphaerica)
TTAGCTCTGCTAGCGGATATCAACACACATTGAGCATCATTATGCGCAAG ATTGTTGATATAGCTATCAGCTCCTTGGAGGAATTAGTAGTATATAGGAG CTCATAGAATAAAGACAGAAGAAAACCGTACACACAAATTCTTAGATTTA TCGCACCCCCAGAACAACACTTTGTTAGCTCACAAGGCTAACAAATGGAG GTTCTACCGAGATCTTAAAGGATTTGGTATTTGCTGTGTTGTTCTGGGGA TTCGAGATTTAGCTTGAGAGCTATAAAGATAAACAAAACAGTGAAACATT TGCATGGAATATTTGAGATATTTTATAATTGAAATAGTCAAATTATACAT CGAGTTGATATGGCTATTCGAAGTTTCTTGGCATTGATTCATTGACATTG TTTATGTTATTGATATGATTTATTGAAGTCGTAACGTCCAGAACATGACG CTAAACTGATCCCGGGCTCCCTTGAGCAAGGTCAGTACCCGGAAGCTTCC CATGTCAGGGTTACGATGAAGAAATTGTATTGTTATACACGTCCTGAATC CTGAAAGTATGTCTTTAAACTTGTCCTGAGAGATACACAAGAACATTATT GAATAACTATGGTTAAAAATGTCCTGAGAGACATAATTTGATGGTCAAGG TTATCTGAAGTGAAGAAAGGCATGGTTTCACTGAGAAAACAGAATAACAT AACGAAACATTATGAAGAAGCTGCCCATGGTTACATCGCAGTAAAAACGA TTGCATCGACAGAGGAATGCTAAGTTGATCCATGGTTGTAAGACGCAACG CAGTAATAGTTTTCCGAGATAGTAATGCGTTATCAGATTCCTAAGAAGTA AGGTGAAACATGCATTTAATTCAACAAAAGACATTTAACCTATGGTCAGG AAACCATAGCATCGAAATTTGATGTGATGCTGTTctaaaaatcggggaaa atcaAAAAGGGCATGATAAAGAAATTCTTATATCGTCAAAAGAACGTGAA AGAAACAGTATCTACCATCTATGCAGCAAAGGAGTTAAATGGCATATTAT AAATCATCAACAAACAGAAGAAATAAGCCAAAACAAAGCAACAAGCAATG CAGCATGTGAGCCAAACAAGcaataaacaaatgaaattaCCACAATATAC CCAAGATGGGGTAAACACAAGCTATGAGAAAAAAACCTCAACAAAGGTTA AAAAACAAAGCAATtgtttttaaacaaacaaacattttcaaACCGATCAT TCAATCATACAGAAGTTATGTATAGTAAAATGAGTAATCGAAGAATCTGA GAGCTCAACAGAAAGtttatccaaaaaaaaacaacagcgGCAATCAACCG AAGGAAATCAAATTGTTGCAgctttcaagaaaatgtttGCTGATCAAAGT AAGGCAAACACAGTCGTATAACCCTCGCCCGCTGCTCAACACCAATACTA GTGATTAGAAGAATCTTCTGACAAAGATGACGAAGATGAAGAATACTTGA GTCGCCAAACATGAGATACTGTGTATTAGATAATATTGCCAtggacaata aaagatagaaaaTTAACCAAGAAATTAGCTACCCTCCATCGCATTGAAAA TTGATGCCCATTCTATCCGAAGATCAAGTGTTTCTGACACTGATGATTTA ATTAACAATTTGAATTATTGAAACATTATCAATGGTAAAAAGACGTATAA tacattaaaaagaaaacacagaaaacaaaattgtagtattttattatttg attaaAAGTGCATATTTTATTTCTAGGAAACATTGAACCATTAGGGAact agtaaaaaaaaaaaattatttaatatttattttagagaattttATTTGGA GTAAATgtggaacattttttttttCAACGGGGTTGTTAGCTCTGCTAGCG GATATCAACACACATTGAGCATCATTATGCGCAAGATTGTTGATATAGCT ATCAGCTCCTTGGAGGAATTAGTAGTATATAGGAGCTCATAGAATAAAGA CAGAAGAAAACCGTACACACAAATTCTTAGATTTATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044859XLOC_044859Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072247-exon-scaffold_71-1491911889:958426..960462TCONS_00072247-exon-scaffold_71-1491911889:958426..960462Clytia hemisphaericaexon
TCONS_00072247-exon-scaffold_71-1510915933:958426..960462TCONS_00072247-exon-scaffold_71-1510915933:958426..960462Clytia hemisphaericaexon
TCONS_00072247-exon-scaffold_71-1575043694:958426..960462TCONS_00072247-exon-scaffold_71-1575043694:958426..960462Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_71supercontigscaffold_71:958426..960462 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0388159 0.0567774 0.065924 0.0429976 6.84186 5.34663 24.6618 24.229 12.1421 7.09639 8.0264 13.0545 16.1806 9.61243 0.290802 0.664678 0.757394 0.81429 0.0206311 0.0431779 0.437634 0.384416 0.311046 0.303465 22.2775 39.8241 0.212897 0.22721 0.064624 0.109736
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072247 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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