TCONS_00072233 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072233
Unique NameTCONS_00072233
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length379

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072233 ID=TCONS_00072233|Name=TCONS_00072233|organism=Clytia hemisphaerica|type=transcript|length=379bp
AATTTTCATCAGCGTTGAATTTCAATTGTCCAGGACACGCTATACAACTA
ACTGTCAGCCCTTTCCAACAAGCAATATAATGTCTATCGTTATTAGGGTC
TGCAATATTACCACTAAAATTTGGATCTTGTTCCGGACATCTATCTGGAC
ATTGGAAGGTAGTGGCTGGTTCAAAGATTTGTGTTGTAACACAATGATCA
TTTTTGTTGTACAAACATTGGTTGCATTGTTCACTGAATTCTAAAATAGA
CGGCCAACAGGATTGGCAATAAGCGATGCCATGTACACATTGAACGAATG
AATGTTTATTTTGCAGAACGGCGTAATTCCCATCGTGTTTTCCTCTGCAT
AATGAGTGTGGACAGGTCTTGGTTTCTTC
Run BLAST on NCBI

protein sequence of TCONS_00072233-protein

>TCONS_00072233-protein ID=TCONS_00072233-protein|Name=TCONS_00072233-protein|organism=Clytia hemisphaerica|type=polypeptide|length=126bp
EETKTCPHSLCRGKHDGNYAVLQNKHSFVQCVHGIAYCQSCWPSILEFSE
QCNQCLYNKNDHCVTTQIFEPATTFQCPDRCPEQDPNFSGNIADPNNDRH
YIACWKGLTVSCIACPGQLKFNADEN
Run BLAST on NCBI

transcript from alignment at scaffold_71:149004..149382

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072233 ID=TCONS_00072233|Name=TCONS_00072233|organism=Clytia hemisphaerica|type=transcript|length=379bp|location=Sequence derived from alignment at scaffold_71:149004..149382 (Clytia hemisphaerica)
GAAGAAACCAAGACCTGTCCACACTCATTATGCAGAGGAAAACACGATGG
GAATTACGCCGTTCTGCAAAATAAACATTCATTCGTTCAATGTGTACATG
GCATCGCTTATTGCCAATCCTGTTGGCCGTCTATTTTAGAATTCAGTGAA
CAATGCAACCAATGTTTGTACAACAAAAATGATCATTGTGTTACAACACA
AATCTTTGAACCAGCCACTACCTTCCAATGTCCAGATAGATGTCCGGAAC
AAGATCCAAATTTTAGTGGTAATATTGCAGACCCTAATAACGATAGACAT
TATATTGCTTGTTGGAAAGGGCTGACAGTTAGTTGTATAGCGTGTCCTGG
ACAATTGAAATTCAACGCTGATGAAAATT

Coding sequence (CDS) from alignment at scaffold_71:149004..149382

>TCONS_00072233 ID=TCONS_00072233|Name=TCONS_00072233|organism=Clytia hemisphaerica|type=CDS|length=378bp|location=Sequence derived from alignment at scaffold_71:149004..149382 (Clytia hemisphaerica)
GAAGAAACCAAGACCTGTCCACACTCATTATGCAGAGGAAAACACGATGG
GAATTACGCCGTTCTGCAAAATAAACATTCATTCGTTCAATGTGTACATG
GCATCGCTTATTGCCAATCCTGTTGGCCGTCTATTTTAGAATTCAGTGAA
CAATGCAACCAATGTTTGTACAACAAAAATGATCATTGTGTTACAACACA
AATCTTTGAACCAGCCACTACCTTCCAATGTCCAGATAGATGTCCGGAAC
AAGATCCAAATTTTAGTGGTAATATTGCAGACCCTAATAACGATAGACAT
TATATTGCTTGTTGGAAAGGGCTGACAGTTAGTTGTATAGCGTGTCCTGG
ACAATTGAAATTCAACGCTGATGAAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044845XLOC_044845Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072233-exon-scaffold_71-1491911889:149004..149382TCONS_00072233-exon-scaffold_71-1491911889:149004..149382Clytia hemisphaericaexon
TCONS_00072233-exon-scaffold_71-1510915933:149004..149382TCONS_00072233-exon-scaffold_71-1510915933:149004..149382Clytia hemisphaericaexon
TCONS_00072233-exon-scaffold_71-1575043694:149004..149382TCONS_00072233-exon-scaffold_71-1575043694:149004..149382Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072233-proteinTCONS_00072233-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_71supercontigscaffold_71:149004..149382 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.208693	0.610524	0	0	0	0	0	0	0	0	0	0	0.27759	0	4.14759	1.90757	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002557Chitin-bd_dom
Vocabulary: Cellular Component
TermDefinition
GO:0005576extracellular region
Vocabulary: Biological Process
TermDefinition
GO:0006030chitin metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0008061chitin binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006030 chitin metabolic process
cellular_component GO:0005576 extracellular region
molecular_function GO:0008061 chitin binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072233 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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