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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072220 ID=TCONS_00072220|Name=TCONS_00072220|organism=Clytia hemisphaerica|type=transcript|length=2892bp
GAAAAGGGAGTAATCAAATACttGCCGATGAATAATTAAATGAAAAGATG
AATGCGTCAACTTCAACATTGAAAGTGACTGTGAATGGGAAGAAATATCT
CATCACTGGCATACAGAAAGAGACTTCGTGTAAAGGTTTACTATGTGCCA
TCGCTAAAGTCACCAGTCTGGAGGATAGTAGCATCCAATCCTATAGTCCA
CGATCAAGTGATATTTCAAATGAGAATTTATTAGAACGTTTTAAAGGTGA
TCGGAAACAAGCAGGTGATTTGACTTCGTTCAATGTTTTCAACACTTTGG
CCAAAGATGCGAAAATCATAGCAAAGGAGAGTAGTTTAAATTGTAAGGAA
GCTCCACAAGAACCTGGACATTCGAAACATTCATCCAAACATAAAAGTAA
GAAACACAAACacgaaaaagaaacaaaaattaagGAAGATAAGGATAAAA
AGAAGGATaaaaaatcgaaacaaaaacatcgaaagaaaGAGACGTTAACG
ACAACCACGACCACACTCACCACACGTACGACCGAAACTAAGATCAAACA
CAAAGTTAAACATCGCAGCGTCGACGATTCTGATATCGAATCATACAAAA
GAGACAATCTAAAACGTATGAAAAACAAGCGAAGGACGTACGACGATTCT
GATCTAGATACGTATAAAACTCTTCAAAATATCGTCAACGACCAAAACAA
AAAACTACATCGAATTCAGAGTTCATCAAGAGAAGTCAAGAAAGCTGCTT
GGATGAAAGAGTTAAAGAGAAACTCGCAGATTTATTACATTGATGATCAA
CCAGAACTTTTAGAGCTTGGAGAACAAGCTgtaaaaatgactgaaaacga
aagttgttctCTTGAAAAAGACGATGGAAATGATTCTGGCCTCCCGTCGC
CAGAATACGACTCCTCAGAGTCAACAGAAaaccaaccaatcaaaattata
GAAACGGTACCATTATTAATAAATGATAACAATAACAATGAGAAATATCC
TGTTGCAAGTAAACCAAAACAGTCTATTGTTAACGATCAAAACAAAAGCC
AAATAGAACAATCAGAGGGGGGTATTTTACCGAACGTAGATAGCGTGAAT
GTCTCGAACAATAGAGAGAAAAGTTGTAATTCAATATCAGCAGAGGAAAG
AATTTCTCTATCGACAAACGGATTAAAAAAAGAGACTTTGAACGAAAACA
GTTGTGAGGTTGATGAAAGGACGAGAAGTGAAATTAAAGGGGATGAGCTG
AACGAAATCTCAAACGCGTTGGATGCAAGCCACAACACGGTGAATGGTGA
TACGAATACAAAAGATATTCCACAACAACATATGGTTGATGCTGTAAACG
AGACTAAAATAAAGAAATCGACTTTGACACCTGTTCAACAAGAATTATAT
AAAACTATGATGATTGATAAgaataagaatattttgaaagactCTGATAC
TTGTGAGAGGGAGGTCAGTAAGATGGTAGCCTTCAATGATGCCTTGTTTA
AAAGCTCAAACCCTTCCACCACCAACGGTATTGGCAAAAAGATGGAgaag
aagaaattcaagaaatgtGATATTTCGGATCCAGTTTTATTGAGTCCGAC
CACGTTGAAGAAACATCATAATGTGAAAAAGGTTCAGTCAGTGTTGGGAA
AGAAAGCGGCAGACGTGTTGAGACAAGACGTTGTCAGGAAGTCTTTCATT
GGAAGTGTTTCTAAACCGACCTCAACGACTGAGAATAAGGAGGTCactaa
agagaaagaaaaatattttaacaaaaaacttaAAGAGATTCGCTCTAAAG
GTTCAAGTAAAAAATCCAAACTGAAAGATAGTAAAAAAGAGCCTGAGTAT
TTCTCGAAAAGTCAATTTGTAGAAAAGCCATTAACGAACAGTAATGAGGA
TGAAATTAATACCAAATTAAATCATAATGGCAAAGCATTATCTACTAATA
ACTCAATATTAGAGGATGTTGTCGATGGGCAGATCACTGGACAACAAGTA
GCGAATAATCCTATCCGCGAAAAGGACAGTCAGTCTGTCCAAGATCTCGA
CAAACACTCAGAGGAGATGTTGGAGGCTCGTTTACGTCAAGAAAGTCTCA
ATGAGAGCGATGTGTTAAAAGCTGATGAAATATTAAACGAAATTCTGGAA
TAtgagaaaaacattaaaaatgaaCTAGACCAAATTATACAAAACGATGA
GACTTTGAGGAAGGAAGAACAGACTGCAACTTTAAATCAAGGGGAGAATT
TTTCATCGAAATCTGCGAAAGTAAACAATGATGAGTCATCTATAAAAGAA
ATGGCTAAAGATGAAGAACAAATACATTTCGAactaattgaaaaatattt
ggaagaaaaacaaactttagatgAAATTGAACAGAAATTGAACGAATATA
ATTACGCTATAACGCGGCTACAAGAGGAGATATTTTTAATCGATCTTGAG
TCAAAGGAACCTAAAACACTTACTGATCTTGATGAAGAGGAGCTTTATGt
ttcaaatgaaattgaaaacgtAAAAAGTCTCATCAAGTCAGTTATCGATT
TAACGAACTACCAACGGAAAGAGATGTCCGAAAATATGGAACTTATAGAC
CAGATGGATCTTGATTATCGGACGCAGAAGGCTAATTATGATAATTTAAG
AAATGGTACTTGGAAAACGAACTCTAAATCAGCGCCCAGGTCTTTGATTA
AGAATGCTAAAGtgaaaaggaagaattcacttaTAGCCGAGGCGAACGGG
ACTTCAAATAGTAGAAGTAATTTTGTTTAGTTTATTGTTTTGTTGGTCTT
AGGGAATTTCTTgtaatttctaatttttgggTTTCGTTGGACAAGCTCTA
ATTCTGCTTTGAAGGAATCTActtttttaatctttatttttg Run BLAST on NCBI transcript from alignment at scaffold_71:1204528..1209336- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072220 ID=TCONS_00072220|Name=TCONS_00072220|organism=Clytia hemisphaerica|type=transcript|length=4809bp|location=Sequence derived from alignment at scaffold_71:1204528..1209336- (Clytia hemisphaerica)
GAAAAGGGAGTAATCAAATACGTGAGTGTACCAAAAAAGTTTTTTTCCTC
GTGTTTGTTGGTCATTGGTTGTTTGTTTGTTTGTTTGGTTGGTTGTTTGG
TTGTTTGGTTGTTGTTAGTTTTTTTTTTTTAACTACACGTTTTTAAAGAA
CATCCAAAATTTTTGAAGCCTTCAGATGCTCTTAACTTTTTGAGTTTTAA
GCCTAAAAATGTTTTTAACATGTTCTTATTTTCACCATTTTTTGAGTATT
TTTGTCCATTTTCTTAAGAAATTGGTTGTTTTAGAGCCCGCGAAGCTTTA
AATGCTTTTAACTTGTTCTTAAGATTTTGGCTATTGAAGCCTTATGTTCT
TACATAGTTTGTTCTTATTTATAAAAAAAACGTGTATATGACAGTGAACT
TGTCCGAACAGATTTGTTCCACCAAAGGATTGCTAGGATTTGAAGAACTT
TGAAGATACAGCTGATGCTCTCTAATTCGATTTTTAAGGAAATTAGTTTT
TCATCGAATAAGGGAGAGTATCTAATAGTAGAAACATCCTGTATGAGAGT
GACTTCCAATATATCGAATAACGGAGCTTATTGAATTGTAGAATGTCGAA
TTAGAAAGTGTTAGTCGTACCATTATGTTTTCCTTAATGTCTTCAAGTTT
GTTTTGTCGATTCCAAGATTTTCCAAACATCACCATACAGTATTTTCAAC
TGTTACTAGTTGCCATACTTCCTCGTGTTTGATTCAGTTTAAATTTTTGA
TTTATCCCTAGTTCTCTTTGGTTTGTTCATTAAAATGTAATTGGTGACAC
TATTTATAGTTACATGCCTATTTTGAAATGTTTAATTATTAACCTATTTA
TTGAATATTTGCCAAAATGAAACTTTTTTGAATGGAATGGCGATTGAAAA
TGTGGCTCTAACTTTGCTTGATTTTTACTTTTAGCAATTCCTGTATTTAA
AATACCCCTGTCTCAATGCCCCGGTGGCATGATTTCAGTACATGATTTTT
TTCAGTACATGGTTTCAGTACATGATTTTTTCCTACGTCACTGCAGTAAT
CAAATTTTTATTGCACTCATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCAG
TGACGTAGGAAAAAATCATGTACTGAAACCATGTACTGAAAAAAATCATG
TACTGAAATCATGCCACCGGGGCACTGAGACAGGGGTGTTTTAAATCAAT
ATTGCCTTTGAGAATCTGATTCGTCATAGAGCCTGTCAGTCCATTCAAAT
ACAAAGAATATGCTGCAGATGTTCTTAAATCAAAGTTTCCAATATTCCTA
TCATAAAAAAGACATTTGAATAGTGTTTTAGGGATAAATATATTAATGTA
ATGAGGCAGTCCACCCTTTTGATGTGTGTTAGCCACACTTTGAATATTCG
TTCAATCAATCATTCTTCATTTTCTTTTGATTTTTTAGTTGCCGATGAAT
AATTAAATGAAAAGATGAATGCGTCAACTTCAACATTGAAAGTGACTGTG
AATGGGAAGAAATATCTCATCACTGGCATACAGAAAGAGACTTCGTGTAA
AGGTTTACTATGTGCCATCGCTAAAGTCACCAGTCTGGAGGATAGTAGCA
TCCAATCCTATAGTCCACGATCAAGTGATATTTCAAATGAGAATTTATTA
GAACGTTTTAAAGGTGATCGGAAACAAGCAGGTGATTTGACTTCGTTCAA
TGTTTTCAACACTTTGGCCAAAGATGCGAAAATCATAGCAAAGGAGAGTA
GTTTAAATTGTAAGGAAGCTCCACAAGAACCTGGACATTCGAAACATTCA
TCCAAACATAAAAGTAAGAAACACAAACACGAAAAAGAAACAAAAATTAA
GGAAGATAAGGATAAAAAGAAGGATAAAAAATCGAAACAAAAACATCGAA
AGAAAGAGACGTTAACGACAACCACGACCACACTCACCACACGTACGACC
GAAACTAAGATCAAACACAAAGTTAAACATCGCAGCGTCGACGATTCTGA
TATCGAATCATACAAAAGAGACAATCTAAAACGTATGAAAAACAAGCGAA
GGACGTACGACGATTCTGATCTAGATACGTATAAAACTCTTCAAAATATC
GTCAACGACCAAAACAAAAAACTACATCGAATTCAGAGTTCATCAAGAGA
AGTCAAGAAAGCTGCTTGGATGAAAGAGTTAAAGAGAAACTCGCAGATTT
ATTACATTGATGATCAACCAGAACTTTTAGAGCTTGGAGAACAAGCTGTA
AAAATGACTGAAAACGAAAGTTGTTCTCTTGAAAAAGACGATGGAAATGA
TTCTGGCCTCCCGTCGCCAGAATACGACTCCTCAGAGTCAACAGAAAACC
AACCAATCAAAATTATAGAAACGGTACCATTATTAATAAATGATAACAAT
AACAATGAGAAATATCCTGTTGCAAGTAAACCAAAACAGTCTATTGTTAA
CGATCAAAACAAAAGCCAAATAGAACAATCAGAGGGGGGTATTTTACCGA
ACGTAGATAGCGTGAATGTCTCGAACAATAGAGAGAAAAGTTGTAATTCA
ATATCAGCAGAGGAAAGAATTTCTCTATCGACAAACGGATTAAAAAAAGA
GACTTTGAACGAAAACAGTTGTGAGGTTGATGAAAGGACGAGAAGTGAAA
TTAAAGGGGATGAGCTGAACGAAATCTCAAACGCGTTGGATGCAAGCCAC
AACACGGTGAATGGTGATACGAATACAAAAGATATTCCACAACAACATAT
GGTTGATGCTGTAAACGAGACTAAAATAAAGAAATCGACTTTGACACCTG
TTCAACAAGAATTATATAAAACTATGATGATTGATAAGAATAAGAATATT
TTGAAAGACTCTGATACTTGTGAGAGGGAGGTCAGTAAGATGGTAGCCTT
CAATGATGCCTTGTTTAAAAGCTCAAACCCTTCCACCACCAACGGTATTG
GCAAAAAGATGGAGAAGAAGAAATTCAAGAAATGTGATATTTCGGATCCA
GTTTTATTGAGTCCGACCACGTTGAAGAAACATCATAATGTGAAAAAGGT
TCAGTCAGTGTTGGGAAAGAAAGCGGCAGACGTGTTGAGACAAGACGTTG
TCAGGAAGTCTTTCATTGGAAGTGTTTCTAAACCGACCTCAACGACTGAG
AATAAGGAGGTCACTAAAGAGAAAGAAAAATATTTTAACAAAAAACTTAA
AGAGATTCGCTCTAAAGGTTCAAGTAAAAAATCCAAACTGAAAGATAGTA
AAAAAGAGCCTGAGTATTTCTCGAAAAGTCAATTTGTAGAAAAGCCATTA
ACGAACAGTAATGAGGATGAAATTAATACCAAATTAAATCATAATGGCAA
AGCATTATCTACTAATAACTCAATATTAGAGGATGTTGTCGATGGGCAGA
TCACTGGACAACAAGTAGCGAATAATCCTATCCGCGAAAAGGACAGTCAG
TCTGTCCAAGATCTCGACAAACACTCAGAGGAGATGTTGGAGGCTCGTTT
ACGTCAAGAAAGTCTCAATGAGAGCGATGTGTTAAAAGCTGATGAAATAT
TAAACGAAATTCTGGAATATGAGAAAAACATTAAAAATGAACTAGACCAA
ATTATACAAAACGATGAGACTTTGAGGAAGGAAGAACAGACTGCAACTTT
AAATCAAGGGGAGAATTTTTCATCGAAATCTGCGAAAGTAAACAATGATG
AGTCATCTATAAAAGAAATGGCTAAAGATGAAGAACAAATACATTTCGAA
CTAATTGAAAAATATTTGGAAGAAAAACAAACTTTAGATGAAATTGAACA
GAAATTGAACGAATATAATTACGCTATAACGCGGCTACAAGAGGAGATAT
TTTTAATCGATCTTGAGTCAAAGGAACCTAAAACACTTACTGATCTTGAT
GAAGAGGAGCTTTATGTTTCAAATGAAATTGAAAACGTAAAAAGTCTCAT
CAAGTCAGTTATCGATTTAACGAACTACCAACGGAAAGAGATGTCCGAAA
ATATGGAACTTATAGACCAGATGGATCTTGATTATCGGACGCAGAAGGCT
AATTATGATAATTTAAGAAATGGTACTTGGAAAACGAACTCTAAATCAGC
GCCCAGGTCTTTGATTAAGAATGCTAAAGTGAAAAGGAAGAATTCACTTA
TAGCCGAGGCGAACGGGACTTCAAATAGTAGAAGTAATTTTGTTTAGTTT
ATTGTTTTGTTGGTCTTAGGGAATTTCTTGTAATTTCTAATTTTTGGGTT
TCGTTGGACAAGCTCTAATTCTGCTTTGAAGGAATCTACTTTTTTAATCT
TTATTTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072220-exon-scaffold_71-1575043694:1209316..1209336 | TCONS_00072220-exon-scaffold_71-1575043694:1209316..1209336 | Clytia hemisphaerica | exon |
| TCONS_00072220-exon-scaffold_71-1575043694:1204528..1207398 | TCONS_00072220-exon-scaffold_71-1575043694:1204528..1207398 | Clytia hemisphaerica | exon |
| TCONS_00072220-exon-scaffold_71-1510915933:1209316..1209336 | TCONS_00072220-exon-scaffold_71-1510915933:1209316..1209336 | Clytia hemisphaerica | exon |
| TCONS_00072220-exon-scaffold_71-1510915933:1204528..1207398 | TCONS_00072220-exon-scaffold_71-1510915933:1204528..1207398 | Clytia hemisphaerica | exon |
| TCONS_00072220-exon-scaffold_71-1491911889:1209316..1209336 | TCONS_00072220-exon-scaffold_71-1491911889:1209316..1209336 | Clytia hemisphaerica | exon |
| TCONS_00072220-exon-scaffold_71-1491911889:1204528..1207398 | TCONS_00072220-exon-scaffold_71-1491911889:1204528..1207398 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_71 | supercontig | scaffold_71:1204528..1209336 - |
Blast
The following BLAST results are available for this feature:
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