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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072218 ID=TCONS_00072218|Name=TCONS_00072218|organism=Clytia hemisphaerica|type=transcript|length=1473bp
CTTTAtgtctatataaaaatttttgacattctgaaaacttcattttttgc
catttttcagattttttgggacgagctttttgcttattgctCTTTATTAT
GCTTTACTTTTAAATACTCTAGTACAAAACATAATTAAGAATTCTGTCAC
TTTGCTTTTCATTTCCTTGGTTTGTCAGGTTTTGTATTTGATTGCATTGT
TTGATTTTAGTACATCATCCTTCTCATGCTTATCTTCATTCTTGAAATCG
CTGGAGGAATCTACGCTGCCGTTAAGAAAGATGATGTTCTCAAATCCTTG
AAAACGAACTTCCAACGATTAATGACTACATCTTATGGACAAACCGAAAA
CAACAAAGCAAACGAGGGATACACTAACTCCATTGACTGGTTCCAAGAAA
ATGTCAAATGTTGTGGCTCCACCGGACCTAACTCATGGAAAAATACTACT
TGGACTAACACCAACAGGGACAAGGCAGTTAACGGGTCAGATTACCAACT
CTTCCCAAAATCATGCTGCAAATCTGGTGATTGTAACATGGGAAATGGCT
TCCCTGTTACTTCAAATGACAACATCTTCATGGATgGTTGCGTGACAGAA
AGTGAACAGTTCTTGAACGATCACATGAAAGAATTGGTCGGTGTCGGTGT
CGGTATCGCTTTTATTCAAATCATCGGTATCGTGTTCGCCATcttattgt
gcaaaaaaatcggAGTAGAATCTGTCTAAAGATTTCGACCACCAAGAACA
CATACACATTAAACTTCTTGatcataaatcaaaatttttgtcttaagtat
ttttttttgttaagtATTTATTTTATCAACCACAGTCAGGTGTATTAAAC
TGAATTTTGTATCGATTTCTTGTcagtcttttttattttagggTTAGCTC
TTCCTTTTTTGGGTGATTTCTTTGTCACattttgtttaatatttttactt
ttttatattaATCGATGTTGTTTTAACACTTTGTATATTCAAATTGACAG
GAACTAACTGTGCGTGAAAGAATGTAATTAATCTTACTTAGCTGATGTAA
AATCACTTTGTGtttaggctgcacacatcccttCTGGTAtgtttgatata
ggggatgcgtatcgtgtgtCTGATTCCCGTCGTAGAACTTTCTttaaaag
ctttagaaattcAATGATTGTGGTTACTAATCATGTCtctaaaacttaaa
aacacaCAGACGGGTcaactctcggacgggaattagATACACGGTACGTA
AATCCCATATATTAAAACATATCAGGAAATGTGTGCAACCTCTTGTGTTA
GACGTTCCATGACCACGAAGGATATCCAAGTTATCCCAGCTAGCGAACGT
GAACGTTGTTTCAAAATATTAATGAAATTAAGACCTTGCTGTTTTCAAAT
CTGTGTTCTGACCTCTCATATTTCTTAGATAAAAGTTAGGTTGTTTTAGG
CTGTGACTTTTATAGGGAATACC Run BLAST on NCBI transcript from alignment at scaffold_71:1182457..1186897- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072218 ID=TCONS_00072218|Name=TCONS_00072218|organism=Clytia hemisphaerica|type=transcript|length=4441bp|location=Sequence derived from alignment at scaffold_71:1182457..1186897- (Clytia hemisphaerica)
CTTTATGTCTATATAAAAATTTTTGACATTCTGAAAACTTCATTTTTTGC
CATTTTTCAGATTTTTTGGGACGAGCTTTTTGCTTATTGCTCTTTATTAT
GCTTTACTTTTAAATACTCTAGTACAAAACATAATTTNTGGACATTTTTG
GAAAAAAATGAGAATGAAACATTTTCGAAAAAAAATCTGTTAGTATTTTT
CCCTTGGCTATTTCTAAGGTATGACTAATTCTAAAATTAAATTTTAGCAG
CTAAATAGTACCAGATGACTTGTTTGAACATANCTTTTGAATACTCTAGT
ACAAAACATAATTAAGAATTCTGTCACTTTGCTTTTCATTTCCTTGGTTT
GTCAGGTTTTGTATTTGATTGCATTGTTTGATTTTAGTACATCATCCTTC
TCATGCTTATCTTCATTCTTGAAATCGCTGGAGGAATCTACGCTGCCGTT
AAGAAAGATGATGTTCTCAAATCCTTGAAAACGAACTTCCAACGATTAAT
GACTACATCTTATGGACAAACCGAAAACAACAAAGCAAACGAGGGATACA
CTAACTCCATTGACTGGTTCCAAGAAAATGTAAGTATTGTCTTTGTTTTT
GTCAGTTTTAGTGATTTATTATAATTAAGTGTTTGCAGGCATCTTATTAC
GACTTTATCCAGTGCTAAGAATACATATATACTATTAATAATAGAAGATA
TACTATTAATAATAGAACTCCTTTTTGAAATTAGACAACCAGAGCTAAAA
ATTCTATATCAGAACTATAAACTAGGCTACCTCTTTTCTTTTTAACTTTA
CAGCAATAAAATACTGACAAGTTTAACACAAAACATTGACAAGTAATCTC
TGGGACAATTGGTCGAAACATGGGACTATTGATATCTTGCCTGTATTTTC
ACTTACTGTTAAATCTCTTTGACAACAAATTTGTTTGATAACTCCCAAGT
TTAGCAATCATACTTTCTGCTATAACATGTCACAATAACTTTCACTGGTA
GCGCGCCCTTTTTAAATTTTTGTTTCAATTCAAAATGACCAGACGCCGAT
TAGAGAACGCCCAAACGCCCAACCGCCTATCGCCTGATGGGATTAACAAA
TAAAGAGTGTAACTTGTCGCGCGAGTGACTTCAAACGCTCAATTGTTTTG
CCACTAGTATGGTCTTTTTTGTTCCAGACATTCGCGTGTGTTCCACTACG
GATTTTTTTCATGTTTCGATTTAAAATCCTACTCGATGCGAAAGAGAAAT
TGTGTAATGTACTTTTTAAATAAACCGTTCATTAAGTCAAATCAAATGAC
TTTGGAGGTTTGGTGAAATGTTGGCCGAATTGCCGTCCCATGTTTTGTCA
GATGGTACCAAGTTAGAGCAGTTGATGGTAAGGTACTTGCAGCCTTTCAG
TGCCTTGCATGACGGGCAGCTAAAATGTTGGCTTGAAATCTAAAATGAAA
CTACTGAAAACAAAAGTAAAATCAGCCCACACCAAATCCCGTAATCTTGA
TATAGGAGTTTTAGTCTTAACTGTTAGATATTATTACTTTTATTCCTATC
TAGCAATTTAATTTCAATATTTCACAGGTCAAATGTTGTGGCTCCACCGG
ACCTAACTCATGGAAAAATACTACTTGGACTAACACCAACAGGGACAAGG
CAGTTAACGGGTCAGATTACCAACTCTTCCCAAAATCATGCTGCAAATCT
GGTGATTGTAACATGGGAAATGGCTTCCCTGTTACTTCAAATGACAACAT
CTTCATGGATGTAAGTCTAACAAATGATCTAAGATAAATGGAATATTATT
TGGCATTCCATTTCATATCCATACAGGGAGATAGACTATCATTTCCAAGG
GTAATTTTAGCAGAATTTCCAGGGGTCTAAATGTGTTTTTCCCATTTTTC
CAGGGGATAAATATTTTTAAATTTCCATGGGGTAAAAGACTAATTTTAGT
TTTTCCACCTCACTTTAAGGTATGAAAAGAATATTTTTGCAAATTTTGCC
ACTTCCCGAGGTATTCACACATATCCAAGAAATATTTTTGAATTTAAGAG
GTTCGTACAGGGGGTGGCTGTATGGAAATTTAGTGGTTTGACCCATTGCT
GGATGAATCCTTGAGCTCTATGAGAGACGGGTAACTTTTTAATAATAACT
AATTGTTTACATGTGGACTTGTTTTTAGACTCCTTGTTTAAAAATTGAAA
TGAGATGGATTGCTTAATTCGAAATCAGAATTTGGATATTAAAAAAAATC
TATGATTCTCAAGGCATTTAAAACTGAAAAGCTTGAAATTCTTAAAAGTA
CATTTAAATGAAGAGGATCTTTAAATTCTTTTCCACTTTTTATAAAAAAA
TTGTTTTCATGACTATTTATTTATCTTGTTTGGTGGTTTTGGATATTAGA
AACTTTCCGTCAGATATTTCCGTTAAAACTGCATATGCATGCCTTTCCAT
AAGCTAATCATTTAGAGAACTTATATAGGAACCCTAACAAGAGAATACTT
AATATTTAATGAAAAAAATCTTTCTCCGTCCTATTTCTTTTGGATAATCC
TTAATCATTTCCTTTCCACTTTCAAACATTGAAAATCGAGTGTCCGGACT
GTATACTAATTTATTAAAGGTTTTATTTTTACATAAGTGTTCCCGTTTCA
TATCAGGACAGTGTCTTCCTATTGTTATTTGCTGATATAAGCAAAAAATG
TTTTTCTTTTCCTCTTTCTGACCAATCTTGCTCCACATCCGTGTCACTCC
AATGTGAAAAAGCTTGTAAATTAAAATTGAGTAAGCAAACGATAGATATC
ACTCTTATTTCACGTAAAATAGTAGTAAGATGTGAATCAAAAACAGCACT
TCTTATACCACTAATCATAACTTGAGATTCTCTTCTTTCTTTTCAGGGTT
GCGTGANTATGATTCTCAAGGCATTTAAAACTGAAAAGCTTGAAATTCTT
AAAAGTACATTTAAATGAAGAGGATCTTTAAATTCTTTTCCACTTTTTAT
AAAAAAACTGTTTTCATGACTATTTATTTATCTTGTTTGGTGGTTTTGGA
TATTAGAAACTTTCCGTCAGATATTTCCGTTAAAACTGCATATGCATGCC
TTTCCATAAGCTAATCATTTAGAGAACTTATATAGGAACCCTAACAAGAG
AATACTTAATATTTAATGAAAAAAATCTTTCTCCGTCCTATTTCTTTTGG
ATAATCCTTAATCATTTCCTTTCCACTTTCAAACATTGAAAATCGAGTGT
CCGGACTGTATACTAATTTATTAAAGGTTTTATTTTTACATAAGTGTTCC
CGTTTCATATCAGGACAGTGTCTTCCTATTGTTATTTGCTGATATAAGCA
AAAAATGTTTTTCTTTTCCTCTTTCTGACCAATCTTGCTCCACATCCGTG
TCACTCCAATGTGAAAAAGCTTGTAAATTAAAATTGAGTAAGCAAACGAT
AGATATCACTCTTATTTCACGTAAAATAGTAGTAAGATGTGAATCAAAAA
CAGCACTTCTTATACCACTAATCATAACTTGAGATTCTCTTCTTTCTTTT
CAGGGTTGCGTGACAGAAAGTGAACAGTTCTTGAACGATCACATGAAAGA
ATTGGTCGGTGTCGGTGTCGGTATCGCTTTTATTCAAATCATCGGTATCG
TGTTCGCCATCTTATTGTGCAAAAAAATCGGAGTAGAATCTGTCTAAAGA
TTTCGACCACCAAGAACACATACACATTAAACTTCTTGATCATAAATCAA
AATTTTTGTCTTAAGTATTTTTTTTTGTTAAGTATTTATTTTATCAACCA
CAGTCAGGTGTATTAAACTGAATTTTGTATCGATTTCTTGTCAGTCTTTT
TTATTTTAGGGTTAGCTCTTCCTTTTTTGGGTGATTTCTTTGTCACATTT
TGTTTAATATTTTTACTTTTTTATATTAATCGATGTTGTTTTAACACTTT
GTATATTCAAATTGACAGGAACTAACTGTGCGTGAAAGAATGTAATTAAT
CTTACTTAGCTGATGTAAAATCACTTTGTGTTTAGGCTGCACACATCCCT
TCTGGTATGTTTGATATAGGGGATGCGTATCGTGTGTCTGATTCCCGTCG
TAGAACTTTCTTTAAAAGCTTTAGAAATTCAATGATTGTGGTTACTAATC
ATGTCTCTAAAACTTAAAAACACACAGACGGGTCAACTCTCGGACGGGAA
TTAGATACACGGTACGTAAATCCCATATATTAAAACATATCAGGAAATGT
GTGCAACCTCTTGTGTTAGACGTTCCATGACCACGAAGGATATCCAAGTT
ATCCCAGCTAGCGAACGTGAACGTTGTTTCAAAATATTAATGAAATTAAG
ACCTTGCTGTTTTCAAATCTGTGTTCTGACCTCTCATATTTCTTAGATAA
AAGTTAGGTTGTTTTAGGCTGTGACTTTTATAGGGAATACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072218-exon-scaffold_71-1575043694:1186768..1186897 | TCONS_00072218-exon-scaffold_71-1575043694:1186768..1186897 | Clytia hemisphaerica | exon |
| TCONS_00072218-exon-scaffold_71-1575043694:1186319..1186590 | TCONS_00072218-exon-scaffold_71-1575043694:1186319..1186590 | Clytia hemisphaerica | exon |
| TCONS_00072218-exon-scaffold_71-1575043694:1185138..1185320 | TCONS_00072218-exon-scaffold_71-1575043694:1185138..1185320 | Clytia hemisphaerica | exon |
| TCONS_00072218-exon-scaffold_71-1575043694:1182457..1183344 | TCONS_00072218-exon-scaffold_71-1575043694:1182457..1183344 | Clytia hemisphaerica | exon |
| TCONS_00072218-exon-scaffold_71-1510915933:1186768..1186897 | TCONS_00072218-exon-scaffold_71-1510915933:1186768..1186897 | Clytia hemisphaerica | exon |
| TCONS_00072218-exon-scaffold_71-1510915933:1186319..1186590 | TCONS_00072218-exon-scaffold_71-1510915933:1186319..1186590 | Clytia hemisphaerica | exon |
| TCONS_00072218-exon-scaffold_71-1510915933:1185138..1185320 | TCONS_00072218-exon-scaffold_71-1510915933:1185138..1185320 | Clytia hemisphaerica | exon |
| TCONS_00072218-exon-scaffold_71-1510915933:1182457..1183344 | TCONS_00072218-exon-scaffold_71-1510915933:1182457..1183344 | Clytia hemisphaerica | exon |
| TCONS_00072218-exon-scaffold_71-1491911889:1186768..1186897 | TCONS_00072218-exon-scaffold_71-1491911889:1186768..1186897 | Clytia hemisphaerica | exon |
| TCONS_00072218-exon-scaffold_71-1491911889:1186319..1186590 | TCONS_00072218-exon-scaffold_71-1491911889:1186319..1186590 | Clytia hemisphaerica | exon |
| TCONS_00072218-exon-scaffold_71-1491911889:1185138..1185320 | TCONS_00072218-exon-scaffold_71-1491911889:1185138..1185320 | Clytia hemisphaerica | exon |
| TCONS_00072218-exon-scaffold_71-1491911889:1182457..1183344 | TCONS_00072218-exon-scaffold_71-1491911889:1182457..1183344 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_71 | supercontig | scaffold_71:1182457..1186897 - |
Blast
The following BLAST results are available for this feature:
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