TCONS_00072217 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072217
Unique NameTCONS_00072217
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length598

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072217 ID=TCONS_00072217|Name=TCONS_00072217|organism=Clytia hemisphaerica|type=transcript|length=598bp
CGAACATCGAGTTTGTAGGGAGACCCAGTCGTAATGGCTGAAGTAGGATG
GGATGATGTCACTTATCTCCGGAAGAAAACACCAAAGGCTGCTGAAGCTC
GATCAAGCAAAgcTGTCAACAGTGCTATGAGATCAGGGACTGACATTGAG
ACATCAAAAAAATACGGTGGTGGTGGTAATAAGCAACACATGGGATCACG
TGACTCAGCTGCCGTATGCCGAGACACAGAAGAAACCAAAATCGAAACGG
TATCATTAGATGTCGGAAAATTAATACAAAAGGGACGAACGGAAAAAGGA
TTAACGCAAAAAGAACTGGCTACACGGATCAACGAGAAGCCGCAGGTGAT
AAACGACTACGAAGCTGGAAGAGCTATCCCAAATAATCAAATCCTCAGCA
AGGTCGAACGCATTATCGGCTTGAAACTGAGAGGCAAAGACAAAGGAAAA
CCTTTCGGAGGACCAAAGggaaaaaagtgacgaaaagGCTCTCACATCAC
AAAAGTCGTGTTTCGTTattgacgtcagcatttttttgtaattattaccA
TACATCTCTTTATTTTCCTTCCAATAAAAAACTAGAAAATAATTATGA
Run BLAST on NCBI

transcript from alignment at scaffold_71:1173861..1179865-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072217 ID=TCONS_00072217|Name=TCONS_00072217|organism=Clytia hemisphaerica|type=transcript|length=6005bp|location=Sequence derived from alignment at scaffold_71:1173861..1179865- (Clytia hemisphaerica)
CGAACATCGAGTTTGTAGGGAGACCCAGTCGTGTAAGCTTGTAGTTAATT
ACAAAGTAAGGTTACTATAACTATAATTATATGAAATTATGAAATAACAG
GGTTTTCATCTAAGTTTGTGTATTACGATTCATAATCGTTACTAGTATAG
TTTTAGGCTGTCTGCGTCGACTGAACAGATAAATTCATTTTGGGAGCATC
CAGCTTGTTTTAGATGATCCTTTGACTCCTTCATTATTTGAGGAATTCCA
TTATTTGATTGAGGGACAGACTAATTTATTATTTTACCAATTTACTACAC
CAAGAATGGCTGAAGTAGGATGGGATGATGTCACTTATCTCCGGAAGAAA
ACACCAAAGGCTGCTGAAGCTCGATCAAGCAAAGTAAGATTTTGATGAAT
GAATAGCTATTTTTTTAAAACCTTCTACTGCTATTTCCCTTTCTTTTCAA
ATTGGGCCGTTTTAGTAGCATCATGGTATTAACCTTAAATATTTTTTTGC
GTACCGTGAAGTCGGGTAACTTGCATCAGTGGAGACTAACATGCATAGTA
TCAGGTATCAAAGATTTTAATGCTGACAAGTTGACAGAACACATTATTGA
CAAAAGTAATCCCTGAGAGATTACCTGAAAACTTAATTTCTAGTTTGGCA
AATCTCCACAAAGATTAGCAAACAATCATTTTTTCCCACTTACAGCTTTT
CTCTTTGATCTTTTATTGTTTTTTGTTTTTTTGTTGATTGCTTAGCTTGC
ACCATCGACAACTCACACATCATTTCTTGAAAGGGAAACACGGTTTTTCC
CAAGCTGTAATGTTGACATACCTTGTTTTAATTTAATTTAAAGTAATGAT
AACTTAAAATTTAAGTCAGTTAGTGGAAGTACTTTGATTTGTGAAGCGTT
TTTACGTCACATAGAACAAAAGAAAATAGTAAAGGAACAAAGGACTAACC
CATAGCCACCATTTCTCAACCATGGGGAATCGACCATTCTTCCCCATAAA
TGCGATAAATGAAGAAGCTTTCGATTTCTGATTGCCTGTCTTTCTAATCT
GCCAGAAAGTGTTACCGTCAACCTGCTCTAGCTTGGGACTATCTGACAAA
ACATTGGACGGCAATTCGGCCACCATTTCACCGAACCTCCGAAGTCATTT
GATTTGAGTTAATGAACGGGGTATTAAAAATACACGATTTCTCTTTTGCA
CCTAGTATGCTTTTAAATCGCAATATGAAAAAATCCGTATTGGAACACAC
GGGAGTGTGTCTGGAAGGAAAAATTTGACAAATTTTTTGTCAAAGACAGT
TAGGAACATTTGATTCAAAAATCTTTGGTTTTTTGAAAAGAATACCCTCC
AGTGAACATAAAATATTATTACGAAAACGTTTGAAAATTCGTTAAAAAAA
GTCTATTGATCAAAATTGACAATTTCATTTTTTGCTTGTCGAAGGTTGGA
GCTTGCCCAAGCACATTACAGGCAAAATTTAAAAATACAGTTGNTATTTC
GGAACAGTTTTCTAAGTAAAATTCTCGAAAAAAATTCGAGCGAAATATCA
AGAACTACAGTTGACGCTCTCTAATTCGACGTTCTACTATTCGATAGGCT
CCCTTATTCGATGAAATTTAAAGTCCCCGTCAACAGAAAACTCTAATAAA
CGACGCTCCCTTATTCGATAAGCTCACTTATTCGATGAAAATCCGATTCC
CCTTGAAGAACGAATTAGAGAGTGTCAACTGTATCAATTTTTGCTCTTAG
ACTTCTTAAAAAGGATTTTCAGACTTTTTCGTAATAATATTTTTTGTTCA
CTGCAAGGTATTCTTTTCAAAAAACCAAAGATTTTTGAATTTTGAATTTT
TATTTTTCGATGACGTCATGTTTTATGGCGTCATTTTGCCTTATTTCCTT
AATATCTCCTGATATATTCATTTTCAGATATAGGTTGTGACCTTTTTCTT
TATCAGTATTTCATGCTCTTTCGAATGAAACAAACAATTTTCAATTCTGA
TGACTTTTTATTTTGGTTGCCATAGTAACCAATGACGCCAGTTTCCATGG
CAACGGGTGGTCACACCCGGCCCCACCTCTCAAATTTTGATCTTCTACAT
TCAAGGAACAATATTCAATCATAAAATCCCTTTGCACAAGCTGCTGCACA
CAGGAAGCTTTTTCGCGACATAGTGGCCCCTACTATACGTCAAACCACGC
AGTGCTGACTTTTAGTTTTATGACTTGTTCTCACTCGTTTGGTTTCCATA
ATAAAAAGAAAGTCGTTATTTTGAACTGTGAACATGCTTAAAATCGAGGT
ACTTCCACTAACTATAAGTTAGCCTTTCCTCTTTAGGCGAAAAGCTTAGA
TAACATTTTTAGCTTTCTCACAATCTTAATTCATACTTGTACACTTTTTT
TTGAAACTCCCCAGGGCTCGAAATAACGGTCGGACATCAGACATTGTCCG
ACCCAAATAGCTTTATGTCCGACCCAAAAACATTAATTTTCAAGCTAAAG
CAATCCTGATCAGACATTTTGTCCGACCCACTTAAAATCGTTATTTCGAG
TCTTGTAGTACTGGGTAGTACTACAAATATATTTCAGACAACCAAAATTA
TTTTAAAGAAGAAACCCTAACTTACTAAAATAGTAGAAAATCATCTCATT
TCGACAGGCTGATACATGTTAGAATTCTCGTTCGAATGATACAGGGGCCG
TATAATGAATCTTTATTTTTCTTTAGGCTGTCAACAGTGCTATGAGATCA
GGGACTGACATTGAGACATCAAAAAAATGTAAGTTAAATTTGTACCTAAT
TATTAAAGACCTTTTTTTATACAGCATATTTTTTTGTTGATGAAAGGAAC
TTTCATAATTTCACTTTTAAATATCCCAGACTATGTGGGTCAGAACCTTG
GGTTTTTCCAAATTGCTTCAGTCACTTTGCCGTCCTCAAAAATGCAATAC
ACAAACTCGCTTTCATTACCTAGTTTATGTATACGTGTGTGGCTTTTCTG
CAATGGAGACGCTCATGTTCTAATTTGACTAGATGCTGGCCAGCTGAGGA
CGACAGTAAATCAACACTTTCACCGTCCTCGATTTTGTGGGTACATAAAC
TCCTATCATTTTCCTTTCAGACGGTGGTGGTGGTAATAAGCAACACATGG
GATCACGTGACTCAGCTGCCGTATGCCGAGACACAGAAGAAACCAAAAGT
ATGTTTTATCTTTGACAATTGTGTGTTTATTGCATTGTGATATTCTTTTT
CCAGCAGTGTTGGAACCCGCCTCCCCCCACCTTAAAAATACACACAATTT
AAAGATAGAATTAGTTTTCTCTCAAGCTTAGGGAGTTGTCTTTTATTTTT
ATGGAGTAGAGTGTGCTCGTTGCTTGATATGTAATGTACGTATCTAATGT
CAACAACCCTTTTTAACCCCAACATCCTTTTTTAGTTTTTTTTATCGGCA
GGTACAAAATGCATAAGACATAATGCATATTGCATAATGAATAATAGTAT
AGTGTAATTTACAGAACGATTTTATATTTTCTAAAACTCTCCTTTGTAGA
GGCTAAAACCGCGAAAACCTCTTTAGAAGAGTTTCTTCAGGTTTCTTAAG
TAAATATTCCAATCAGAGGAATTTCCCCAGACATGATATTTACTTTTCGA
ATCCGAACGAAAGAGAAGACATTCGAATCATAACAACAAAGGGTTTTCCG
TCAGCATGAATAATACGAAGATGCAACAGATCAGAAAGGTTCCCCCCTTC
TTCCTTCTCTAAAAAAGGTAAACACATAAACATTCGAAAATGTAAAAAGA
TTCGAAGTCTATTTTCTTTGATCTAGCTTTCGCATGAAGCTCTTTAATTT
ATATTGGCTAGATACTGGATTATCTAGCAAAAAGCATTCACATGGTTAAT
GCTTTGTAAGAAGGAAAACCCGTTGCAATTTATTAGCAATTGTTCGAAAA
GATCTCTGAGAAAACCAGAATAAAGATCTTGCTATAAAATTTACGTTTTT
GAGTTAGAAAAGTAATATACGGAGAAGATATTTTCGTGTTTTTTCTACAC
TTTACTACGTTCTGTAAAATAAAACTATGAAAATCATAATGGCGACAAGC
ATTTTCAGTGGATCACGGATTTTCTTTACCATCCAAAATTCAAATTTACA
GCATTCTACCCTTTATTTTCTGGTAGAAAATGGTATATTTGTTTTGTTGA
AAGTATTATCTTTCATAACTTCTTATTATAGCCTCTAAAATTGACATTTT
TCAAATATTATACATTATGCATTATGCAATATGCAATATGTTTTATGTAT
TTTGGATCTGTCAGTTTTTTATATCTAACTACATAAGCCTTGTGAATTAT
TTTCTCAAATAAAGGGATTTGAACGAGGAGAATCTAGAGATGAGAAAGAT
TCTTATTCAGCGATTCCGATCTCTAAATCCGAATTCTGAACTCTAAAGAA
GAATTACAGAACTAGGAGAGGGTTGTCGAGGTTAGACTAATTTACGGTTT
GACTGCTACAGTGACTGTATCAAGCTGCACAAATTGTAGGTTAAAACTCT
AATTTAGGTCTTGATAATAATAATAATAATTTTCAAATTGTTCCTTCGTG
TCACTTTGCTCAATAATTCGTTTAGAAATCTAACGTTTTTCGTTTTCGTG
TGCCAGGGAACCTATATGTGCTAACTCACTCCATCACTCCACTTACATTT
TTGTTTTTCTTTTTCCTATTAGTCGAAACGGTATCATTAGATGTCGGAAA
ATTAATACAAAAGGGACGAACGGAAAAAGGATTAACGCAAAAAGAACTGG
CTACAGTAAGTCTTTTTGTTGTTGTTGTGATTTATTTTGTATCTTCATAC
ATAGATTTTTTGTTCTAGTGTCGTAAAAATATGGCAGTGGATTCATCAGC
TGTTGGGAAACGTCTTATCGATGAAATGGAAGGGGGATTTTTCATAGATT
TGAATTTTGGAAGTAGAGTAGCGAACACTCGTTAATAATTTATTTCAATA
TCTTCTCGTGTTATTGCAATTTTATTATGAAAAATTTGTTAACTGTATAA
CCTTATTGTTGCACTTGTTAGCGGATCAACGAGAAGCCGCAGGTGATAAA
CGACTACGAAGCTGGAAGAGCTATCCCAAATAATCAAATCCTCAGCAAGG
TCGAACGCATTATCGGTAGGTCCCAGCCTCTTCTAATCTACTGTATATTG
ATTTCCAAAAGAAGTTTCATACACCACCTTTTTAACTTTCTCTGTGTTCT
TTGTTATGCCGTTAGGGGCAAGACATAAAGTACTTACGCAGTGAAGGGGG
AAGAGGGGGCTTAGCAAAAGCGTACGTCTATTGTTTGAATGATGTCATTT
TTATTGTTCTCTGTGTACAAGGGGGGAGGGGGTATCAAATATTTAGAAAG
CTTTGTGAACGTACTATAATATGGATTACCTGACAGTACACCTTTTTGAC
CGGAGCCACCAATTTACGCGCGGGCATTTTTTTGTCCGCTTTATCCCACT
AAAACCGTCCCAGTCCTTTTTTCACACCTATAGACAATAGAAAAATATGT
CAAAAAAGGATTGGATGGATAGTGGGATAAAGCGGACAAGAAAATGCCCA
CGCGGCAATTCGCGACTACGGTCGAAAAGGTGTATTTTCGATAGCGATGT
TAAATTGACCGGCTTTGATTTAGGCCCTGCACTATGCAGAAAGAACGAGG
CACGTATCAGTACGTGTCTTTTGATTCTTTTGTAACCCCCTAGTATGAGT
TTTGTGTTCCCATACAAAGCGCCTTAGACTTTATTATTTACTGTATTGAA
CCTCAAATTTTTCTTCAACATTCAGGCTTGAAACTGAGAGGCAAAGACAA
AGGAAAACCTTTCGGAGGACCAAAGGGAAAAAAGTGACGAAAAGGCTCTC
ACATCACAAAAGTCGTGTTTCGTTATTGACGTCAGCATTTTTTTGTAATT
ATTACCATACATCTCTTTATTTTCCTTCCAATAAAAAACTAGAAAATAAT
TATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044837XLOC_044837Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072217-exon-scaffold_71-1575043694:1179834..1179865TCONS_00072217-exon-scaffold_71-1575043694:1179834..1179865Clytia hemisphaericaexon
TCONS_00072217-exon-scaffold_71-1575043694:1179483..1179561TCONS_00072217-exon-scaffold_71-1575043694:1179483..1179561Clytia hemisphaericaexon
TCONS_00072217-exon-scaffold_71-1575043694:1177088..1177139TCONS_00072217-exon-scaffold_71-1575043694:1177088..1177139Clytia hemisphaericaexon
TCONS_00072217-exon-scaffold_71-1575043694:1176668..1176745TCONS_00072217-exon-scaffold_71-1575043694:1176668..1176745Clytia hemisphaericaexon
TCONS_00072217-exon-scaffold_71-1575043694:1175061..1175143TCONS_00072217-exon-scaffold_71-1575043694:1175061..1175143Clytia hemisphaericaexon
TCONS_00072217-exon-scaffold_71-1575043694:1174701..1174794TCONS_00072217-exon-scaffold_71-1575043694:1174701..1174794Clytia hemisphaericaexon
TCONS_00072217-exon-scaffold_71-1575043694:1173861..1174040TCONS_00072217-exon-scaffold_71-1575043694:1173861..1174040Clytia hemisphaericaexon
TCONS_00072217-exon-scaffold_71-1510915933:1179834..1179865TCONS_00072217-exon-scaffold_71-1510915933:1179834..1179865Clytia hemisphaericaexon
TCONS_00072217-exon-scaffold_71-1510915933:1179483..1179561TCONS_00072217-exon-scaffold_71-1510915933:1179483..1179561Clytia hemisphaericaexon
TCONS_00072217-exon-scaffold_71-1510915933:1177088..1177139TCONS_00072217-exon-scaffold_71-1510915933:1177088..1177139Clytia hemisphaericaexon
TCONS_00072217-exon-scaffold_71-1510915933:1176668..1176745TCONS_00072217-exon-scaffold_71-1510915933:1176668..1176745Clytia hemisphaericaexon
TCONS_00072217-exon-scaffold_71-1510915933:1175061..1175143TCONS_00072217-exon-scaffold_71-1510915933:1175061..1175143Clytia hemisphaericaexon
TCONS_00072217-exon-scaffold_71-1510915933:1174701..1174794TCONS_00072217-exon-scaffold_71-1510915933:1174701..1174794Clytia hemisphaericaexon
TCONS_00072217-exon-scaffold_71-1510915933:1173861..1174040TCONS_00072217-exon-scaffold_71-1510915933:1173861..1174040Clytia hemisphaericaexon
TCONS_00072217-exon-scaffold_71-1491911889:1179834..1179865TCONS_00072217-exon-scaffold_71-1491911889:1179834..1179865Clytia hemisphaericaexon
TCONS_00072217-exon-scaffold_71-1491911889:1179483..1179561TCONS_00072217-exon-scaffold_71-1491911889:1179483..1179561Clytia hemisphaericaexon
TCONS_00072217-exon-scaffold_71-1491911889:1177088..1177139TCONS_00072217-exon-scaffold_71-1491911889:1177088..1177139Clytia hemisphaericaexon
TCONS_00072217-exon-scaffold_71-1491911889:1176668..1176745TCONS_00072217-exon-scaffold_71-1491911889:1176668..1176745Clytia hemisphaericaexon
TCONS_00072217-exon-scaffold_71-1491911889:1175061..1175143TCONS_00072217-exon-scaffold_71-1491911889:1175061..1175143Clytia hemisphaericaexon
TCONS_00072217-exon-scaffold_71-1491911889:1174701..1174794TCONS_00072217-exon-scaffold_71-1491911889:1174701..1174794Clytia hemisphaericaexon
TCONS_00072217-exon-scaffold_71-1491911889:1173861..1174040TCONS_00072217-exon-scaffold_71-1491911889:1173861..1174040Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_71supercontigscaffold_71:1173861..1179865 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
18.8048	0.0233262	0.000942515	9.23503e-06	64.9523	54.3786	148.005	138.671	0.339176	22.5184	68.9958	26.2187	11.2263	0.453163	0.000833146	0.0192893	0.00072517	8.05567	31.7805	0.0660199	0.289112	1.46388	0.0418025	4.99399e-08	150.563	140.357	1.20892	0.0013619	5.46536	0.00716047
Blast
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BLAST of TCONS_00072217 vs. Swiss-Prot (Human)
Match: EDF1 (Endothelial differentiation-related factor 1 OS=Homo sapiens GN=EDF1 PE=1 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.120e-52
Identity = 82/132 (62.12%), Postives = 105/132 (79.55%), Query Frame = 1 
Query:   34 MAEVGWDDVTYLRKKTPKAAEARSSKAVNSAMRSGTDIETSKKYGGGGNKQHMGSRDSAAVCRDTEETKIETVSLDVGKLIQKGRTEKGLTQKELATRINEKPQVINDYEAGRAIPNNQILSKVERIIGLKL 429
            MAE  WD VT LRKK P AA+A+S +A+ +A R G D+ETSKK+  G NKQH  ++++A + R+TEE   + V+L+VGK+IQ+GR  KGLTQK+LAT+INEKPQVI DYE+GRAIPNNQ+L K+ER IGLKL
Sbjct:    1 MAESDWDTVTVLRKKGPTAAQAKSKQAILAAQRRGEDVETSKKWAAGQNKQHSITKNTAKLDRETEELHHDRVTLEVGKVIQQGRQSKGLTQKDLATKINEKPQVIADYESGRAIPNNQVLGKIERAIGLKL 132
The following BLAST results are available for this feature:
BLAST of TCONS_00072217 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
EDF11.120e-5262.12Endothelial differentiation-related factor 1 OS=Ho... [more]
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