TCONS_00072216 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072216
Unique NameTCONS_00072216
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length845

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072216 ID=TCONS_00072216|Name=TCONS_00072216|organism=Clytia hemisphaerica|type=transcript|length=845bp
CAGTCGTGTAAGCTTGTAGTTAATTACAAAGTAAGGTTACTATAACTATA
ATTatatgaaattatgaaataacAGGGTTTTCATCTAAGTTTGTGTATTA
CGATTCATAATCGTTACTAGTATAGTTTTAGGCTGTCTGCGTCGACTGAA
CAGATAAATTCATTTTGGGAGCATCCAGCTTGTTTTAGATGATCCTTTGA
CTCCTTCATTATTTGAGGAATTCCATTATTTGATTGAGGGACAGactaat
ttattattttaccaATTTACTACACCAAGAATGGCTGAAGTAGGATGGGA
TGATGTCACTTATCTCCGGAAGAAAACACCAAAGGCTGCTGAAGCTCGAT
CAAGCAAAgcTGTCAACAGTGCTATGAGATCAGGGACTGACATTGAGACA
TCAAAAAAATACGGTGGTGGTGGTAATAAGCAACACATGGGATCACGTGA
CTCAGCTGCCGTATGCCGAGACACAGAAGAAACCAAAATCGAAACGGTAT
CATTAGATGTCGGAAAATTAATACAAAAGGGACGAACGGAAAAAGGATTA
ACGCAAAAAGAACTGGCTACACGGATCAACGAGAAGCCGCAGGTGATAAA
CGACTACGAAGCTGGAAGAGCTATCCCAAATAATCAAATCCTCAGCAAGG
TCGAACGCATTATCGGCTTGAAACTGAGAGGCAAAGACAAAGGAAAACCT
TTCGGAGGACCAAAGggaaaaaagtgacgaaaagGCTCTCACATCACAAA
AGTCGTGTTTCGTTattgacgtcagcatttttttgtaattattaccATAC
ATCTCTTTATTTTCCTTCCAATAAAAAACTAGAAAATAATTATGA
Run BLAST on NCBI

transcript from alignment at scaffold_71:1173861..1179840-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072216 ID=TCONS_00072216|Name=TCONS_00072216|organism=Clytia hemisphaerica|type=transcript|length=5980bp|location=Sequence derived from alignment at scaffold_71:1173861..1179840- (Clytia hemisphaerica)
CAGTCGTGTAAGCTTGTAGTTAATTACAAAGTAAGGTTACTATAACTATA
ATTATATGAAATTATGAAATAACAGGGTTTTCATCTAAGTTTGTGTATTA
CGATTCATAATCGTTACTAGTATAGTTTTAGGCTGTCTGCGTCGACTGAA
CAGATAAATTCATTTTGGGAGCATCCAGCTTGTTTTAGATGATCCTTTGA
CTCCTTCATTATTTGAGGAATTCCATTATTTGATTGAGGGACAGACTAAT
TTATTATTTTACCAATTTACTACACCAAGAATGGCTGAAGTAGGATGGGA
TGATGTCACTTATCTCCGGAAGAAAACACCAAAGGCTGCTGAAGCTCGAT
CAAGCAAAGTAAGATTTTGATGAATGAATAGCTATTTTTTTAAAACCTTC
TACTGCTATTTCCCTTTCTTTTCAAATTGGGCCGTTTTAGTAGCATCATG
GTATTAACCTTAAATATTTTTTTGCGTACCGTGAAGTCGGGTAACTTGCA
TCAGTGGAGACTAACATGCATAGTATCAGGTATCAAAGATTTTAATGCTG
ACAAGTTGACAGAACACATTATTGACAAAAGTAATCCCTGAGAGATTACC
TGAAAACTTAATTTCTAGTTTGGCAAATCTCCACAAAGATTAGCAAACAA
TCATTTTTTCCCACTTACAGCTTTTCTCTTTGATCTTTTATTGTTTTTTG
TTTTTTTGTTGATTGCTTAGCTTGCACCATCGACAACTCACACATCATTT
CTTGAAAGGGAAACACGGTTTTTCCCAAGCTGTAATGTTGACATACCTTG
TTTTAATTTAATTTAAAGTAATGATAACTTAAAATTTAAGTCAGTTAGTG
GAAGTACTTTGATTTGTGAAGCGTTTTTACGTCACATAGAACAAAAGAAA
ATAGTAAAGGAACAAAGGACTAACCCATAGCCACCATTTCTCAACCATGG
GGAATCGACCATTCTTCCCCATAAATGCGATAAATGAAGAAGCTTTCGAT
TTCTGATTGCCTGTCTTTCTAATCTGCCAGAAAGTGTTACCGTCAACCTG
CTCTAGCTTGGGACTATCTGACAAAACATTGGACGGCAATTCGGCCACCA
TTTCACCGAACCTCCGAAGTCATTTGATTTGAGTTAATGAACGGGGTATT
AAAAATACACGATTTCTCTTTTGCACCTAGTATGCTTTTAAATCGCAATA
TGAAAAAATCCGTATTGGAACACACGGGAGTGTGTCTGGAAGGAAAAATT
TGACAAATTTTTTGTCAAAGACAGTTAGGAACATTTGATTCAAAAATCTT
TGGTTTTTTGAAAAGAATACCCTCCAGTGAACATAAAATATTATTACGAA
AACGTTTGAAAATTCGTTAAAAAAAGTCTATTGATCAAAATTGACAATTT
CATTTTTTGCTTGTCGAAGGTTGGAGCTTGCCCAAGCACATTACAGGCAA
AATTTAAAAATACAGTTGNTATTTCGGAACAGTTTTCTAAGTAAAATTCT
CGAAAAAAATTCGAGCGAAATATCAAGAACTACAGTTGACGCTCTCTAAT
TCGACGTTCTACTATTCGATAGGCTCCCTTATTCGATGAAATTTAAAGTC
CCCGTCAACAGAAAACTCTAATAAACGACGCTCCCTTATTCGATAAGCTC
ACTTATTCGATGAAAATCCGATTCCCCTTGAAGAACGAATTAGAGAGTGT
CAACTGTATCAATTTTTGCTCTTAGACTTCTTAAAAAGGATTTTCAGACT
TTTTCGTAATAATATTTTTTGTTCACTGCAAGGTATTCTTTTCAAAAAAC
CAAAGATTTTTGAATTTTGAATTTTTATTTTTCGATGACGTCATGTTTTA
TGGCGTCATTTTGCCTTATTTCCTTAATATCTCCTGATATATTCATTTTC
AGATATAGGTTGTGACCTTTTTCTTTATCAGTATTTCATGCTCTTTCGAA
TGAAACAAACAATTTTCAATTCTGATGACTTTTTATTTTGGTTGCCATAG
TAACCAATGACGCCAGTTTCCATGGCAACGGGTGGTCACACCCGGCCCCA
CCTCTCAAATTTTGATCTTCTACATTCAAGGAACAATATTCAATCATAAA
ATCCCTTTGCACAAGCTGCTGCACACAGGAAGCTTTTTCGCGACATAGTG
GCCCCTACTATACGTCAAACCACGCAGTGCTGACTTTTAGTTTTATGACT
TGTTCTCACTCGTTTGGTTTCCATAATAAAAAGAAAGTCGTTATTTTGAA
CTGTGAACATGCTTAAAATCGAGGTACTTCCACTAACTATAAGTTAGCCT
TTCCTCTTTAGGCGAAAAGCTTAGATAACATTTTTAGCTTTCTCACAATC
TTAATTCATACTTGTACACTTTTTTTTGAAACTCCCCAGGGCTCGAAATA
ACGGTCGGACATCAGACATTGTCCGACCCAAATAGCTTTATGTCCGACCC
AAAAACATTAATTTTCAAGCTAAAGCAATCCTGATCAGACATTTTGTCCG
ACCCACTTAAAATCGTTATTTCGAGTCTTGTAGTACTGGGTAGTACTACA
AATATATTTCAGACAACCAAAATTATTTTAAAGAAGAAACCCTAACTTAC
TAAAATAGTAGAAAATCATCTCATTTCGACAGGCTGATACATGTTAGAAT
TCTCGTTCGAATGATACAGGGGCCGTATAATGAATCTTTATTTTTCTTTA
GGCTGTCAACAGTGCTATGAGATCAGGGACTGACATTGAGACATCAAAAA
AATGTAAGTTAAATTTGTACCTAATTATTAAAGACCTTTTTTTATACAGC
ATATTTTTTTGTTGATGAAAGGAACTTTCATAATTTCACTTTTAAATATC
CCAGACTATGTGGGTCAGAACCTTGGGTTTTTCCAAATTGCTTCAGTCAC
TTTGCCGTCCTCAAAAATGCAATACACAAACTCGCTTTCATTACCTAGTT
TATGTATACGTGTGTGGCTTTTCTGCAATGGAGACGCTCATGTTCTAATT
TGACTAGATGCTGGCCAGCTGAGGACGACAGTAAATCAACACTTTCACCG
TCCTCGATTTTGTGGGTACATAAACTCCTATCATTTTCCTTTCAGACGGT
GGTGGTGGTAATAAGCAACACATGGGATCACGTGACTCAGCTGCCGTATG
CCGAGACACAGAAGAAACCAAAAGTATGTTTTATCTTTGACAATTGTGTG
TTTATTGCATTGTGATATTCTTTTTCCAGCAGTGTTGGAACCCGCCTCCC
CCCACCTTAAAAATACACACAATTTAAAGATAGAATTAGTTTTCTCTCAA
GCTTAGGGAGTTGTCTTTTATTTTTATGGAGTAGAGTGTGCTCGTTGCTT
GATATGTAATGTACGTATCTAATGTCAACAACCCTTTTTAACCCCAACAT
CCTTTTTTAGTTTTTTTTATCGGCAGGTACAAAATGCATAAGACATAATG
CATATTGCATAATGAATAATAGTATAGTGTAATTTACAGAACGATTTTAT
ATTTTCTAAAACTCTCCTTTGTAGAGGCTAAAACCGCGAAAACCTCTTTA
GAAGAGTTTCTTCAGGTTTCTTAAGTAAATATTCCAATCAGAGGAATTTC
CCCAGACATGATATTTACTTTTCGAATCCGAACGAAAGAGAAGACATTCG
AATCATAACAACAAAGGGTTTTCCGTCAGCATGAATAATACGAAGATGCA
ACAGATCAGAAAGGTTCCCCCCTTCTTCCTTCTCTAAAAAAGGTAAACAC
ATAAACATTCGAAAATGTAAAAAGATTCGAAGTCTATTTTCTTTGATCTA
GCTTTCGCATGAAGCTCTTTAATTTATATTGGCTAGATACTGGATTATCT
AGCAAAAAGCATTCACATGGTTAATGCTTTGTAAGAAGGAAAACCCGTTG
CAATTTATTAGCAATTGTTCGAAAAGATCTCTGAGAAAACCAGAATAAAG
ATCTTGCTATAAAATTTACGTTTTTGAGTTAGAAAAGTAATATACGGAGA
AGATATTTTCGTGTTTTTTCTACACTTTACTACGTTCTGTAAAATAAAAC
TATGAAAATCATAATGGCGACAAGCATTTTCAGTGGATCACGGATTTTCT
TTACCATCCAAAATTCAAATTTACAGCATTCTACCCTTTATTTTCTGGTA
GAAAATGGTATATTTGTTTTGTTGAAAGTATTATCTTTCATAACTTCTTA
TTATAGCCTCTAAAATTGACATTTTTCAAATATTATACATTATGCATTAT
GCAATATGCAATATGTTTTATGTATTTTGGATCTGTCAGTTTTTTATATC
TAACTACATAAGCCTTGTGAATTATTTTCTCAAATAAAGGGATTTGAACG
AGGAGAATCTAGAGATGAGAAAGATTCTTATTCAGCGATTCCGATCTCTA
AATCCGAATTCTGAACTCTAAAGAAGAATTACAGAACTAGGAGAGGGTTG
TCGAGGTTAGACTAATTTACGGTTTGACTGCTACAGTGACTGTATCAAGC
TGCACAAATTGTAGGTTAAAACTCTAATTTAGGTCTTGATAATAATAATA
ATAATTTTCAAATTGTTCCTTCGTGTCACTTTGCTCAATAATTCGTTTAG
AAATCTAACGTTTTTCGTTTTCGTGTGCCAGGGAACCTATATGTGCTAAC
TCACTCCATCACTCCACTTACATTTTTGTTTTTCTTTTTCCTATTAGTCG
AAACGGTATCATTAGATGTCGGAAAATTAATACAAAAGGGACGAACGGAA
AAAGGATTAACGCAAAAAGAACTGGCTACAGTAAGTCTTTTTGTTGTTGT
TGTGATTTATTTTGTATCTTCATACATAGATTTTTTGTTCTAGTGTCGTA
AAAATATGGCAGTGGATTCATCAGCTGTTGGGAAACGTCTTATCGATGAA
ATGGAAGGGGGATTTTTCATAGATTTGAATTTTGGAAGTAGAGTAGCGAA
CACTCGTTAATAATTTATTTCAATATCTTCTCGTGTTATTGCAATTTTAT
TATGAAAAATTTGTTAACTGTATAACCTTATTGTTGCACTTGTTAGCGGA
TCAACGAGAAGCCGCAGGTGATAAACGACTACGAAGCTGGAAGAGCTATC
CCAAATAATCAAATCCTCAGCAAGGTCGAACGCATTATCGGTAGGTCCCA
GCCTCTTCTAATCTACTGTATATTGATTTCCAAAAGAAGTTTCATACACC
ACCTTTTTAACTTTCTCTGTGTTCTTTGTTATGCCGTTAGGGGCAAGACA
TAAAGTACTTACGCAGTGAAGGGGGAAGAGGGGGCTTAGCAAAAGCGTAC
GTCTATTGTTTGAATGATGTCATTTTTATTGTTCTCTGTGTACAAGGGGG
GAGGGGGTATCAAATATTTAGAAAGCTTTGTGAACGTACTATAATATGGA
TTACCTGACAGTACACCTTTTTGACCGGAGCCACCAATTTACGCGCGGGC
ATTTTTTTGTCCGCTTTATCCCACTAAAACCGTCCCAGTCCTTTTTTCAC
ACCTATAGACAATAGAAAAATATGTCAAAAAAGGATTGGATGGATAGTGG
GATAAAGCGGACAAGAAAATGCCCACGCGGCAATTCGCGACTACGGTCGA
AAAGGTGTATTTTCGATAGCGATGTTAAATTGACCGGCTTTGATTTAGGC
CCTGCACTATGCAGAAAGAACGAGGCACGTATCAGTACGTGTCTTTTGAT
TCTTTTGTAACCCCCTAGTATGAGTTTTGTGTTCCCATACAAAGCGCCTT
AGACTTTATTATTTACTGTATTGAACCTCAAATTTTTCTTCAACATTCAG
GCTTGAAACTGAGAGGCAAAGACAAAGGAAAACCTTTCGGAGGACCAAAG
GGAAAAAAGTGACGAAAAGGCTCTCACATCACAAAAGTCGTGTTTCGTTA
TTGACGTCAGCATTTTTTTGTAATTATTACCATACATCTCTTTATTTTCC
TTCCAATAAAAAACTAGAAAATAATTATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044837XLOC_044837Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072216-exon-scaffold_71-1575043694:1179483..1179840TCONS_00072216-exon-scaffold_71-1575043694:1179483..1179840Clytia hemisphaericaexon
TCONS_00072216-exon-scaffold_71-1575043694:1177088..1177139TCONS_00072216-exon-scaffold_71-1575043694:1177088..1177139Clytia hemisphaericaexon
TCONS_00072216-exon-scaffold_71-1575043694:1176668..1176745TCONS_00072216-exon-scaffold_71-1575043694:1176668..1176745Clytia hemisphaericaexon
TCONS_00072216-exon-scaffold_71-1575043694:1175061..1175143TCONS_00072216-exon-scaffold_71-1575043694:1175061..1175143Clytia hemisphaericaexon
TCONS_00072216-exon-scaffold_71-1575043694:1174701..1174794TCONS_00072216-exon-scaffold_71-1575043694:1174701..1174794Clytia hemisphaericaexon
TCONS_00072216-exon-scaffold_71-1575043694:1173861..1174040TCONS_00072216-exon-scaffold_71-1575043694:1173861..1174040Clytia hemisphaericaexon
TCONS_00072216-exon-scaffold_71-1510915933:1179483..1179840TCONS_00072216-exon-scaffold_71-1510915933:1179483..1179840Clytia hemisphaericaexon
TCONS_00072216-exon-scaffold_71-1510915933:1177088..1177139TCONS_00072216-exon-scaffold_71-1510915933:1177088..1177139Clytia hemisphaericaexon
TCONS_00072216-exon-scaffold_71-1510915933:1176668..1176745TCONS_00072216-exon-scaffold_71-1510915933:1176668..1176745Clytia hemisphaericaexon
TCONS_00072216-exon-scaffold_71-1510915933:1175061..1175143TCONS_00072216-exon-scaffold_71-1510915933:1175061..1175143Clytia hemisphaericaexon
TCONS_00072216-exon-scaffold_71-1510915933:1174701..1174794TCONS_00072216-exon-scaffold_71-1510915933:1174701..1174794Clytia hemisphaericaexon
TCONS_00072216-exon-scaffold_71-1510915933:1173861..1174040TCONS_00072216-exon-scaffold_71-1510915933:1173861..1174040Clytia hemisphaericaexon
TCONS_00072216-exon-scaffold_71-1491911889:1179483..1179840TCONS_00072216-exon-scaffold_71-1491911889:1179483..1179840Clytia hemisphaericaexon
TCONS_00072216-exon-scaffold_71-1491911889:1177088..1177139TCONS_00072216-exon-scaffold_71-1491911889:1177088..1177139Clytia hemisphaericaexon
TCONS_00072216-exon-scaffold_71-1491911889:1176668..1176745TCONS_00072216-exon-scaffold_71-1491911889:1176668..1176745Clytia hemisphaericaexon
TCONS_00072216-exon-scaffold_71-1491911889:1175061..1175143TCONS_00072216-exon-scaffold_71-1491911889:1175061..1175143Clytia hemisphaericaexon
TCONS_00072216-exon-scaffold_71-1491911889:1174701..1174794TCONS_00072216-exon-scaffold_71-1491911889:1174701..1174794Clytia hemisphaericaexon
TCONS_00072216-exon-scaffold_71-1491911889:1173861..1174040TCONS_00072216-exon-scaffold_71-1491911889:1173861..1174040Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_71supercontigscaffold_71:1173861..1179840 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
241.33	244.175	129.465	113.781	81.16	65.3582	131.114	160.78	139.063	154.956	138.687	140.348	135.829	168.631	128.207	131.976	146.24	135.406	121.208	119.007	147.235	139.222	160.834	148.008	136.325	157.316	130.526	121.724	110.168	98.1466
Blast
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BLAST of TCONS_00072216 vs. Swiss-Prot (Human)
Match: EDF1 (Endothelial differentiation-related factor 1 OS=Homo sapiens GN=EDF1 PE=1 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.652e-51
Identity = 82/132 (62.12%), Postives = 105/132 (79.55%), Query Frame = 2 
Query:  281 MAEVGWDDVTYLRKKTPKAAEARSSKAVNSAMRSGTDIETSKKYGGGGNKQHMGSRDSAAVCRDTEETKIETVSLDVGKLIQKGRTEKGLTQKELATRINEKPQVINDYEAGRAIPNNQILSKVERIIGLKL 676
            MAE  WD VT LRKK P AA+A+S +A+ +A R G D+ETSKK+  G NKQH  ++++A + R+TEE   + V+L+VGK+IQ+GR  KGLTQK+LAT+INEKPQVI DYE+GRAIPNNQ+L K+ER IGLKL
Sbjct:    1 MAESDWDTVTVLRKKGPTAAQAKSKQAILAAQRRGEDVETSKKWAAGQNKQHSITKNTAKLDRETEELHHDRVTLEVGKVIQQGRQSKGLTQKDLATKINEKPQVIADYESGRAIPNNQVLGKIERAIGLKL 132
The following BLAST results are available for this feature:
BLAST of TCONS_00072216 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
EDF11.652e-5162.12Endothelial differentiation-related factor 1 OS=Ho... [more]
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