|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072208 ID=TCONS_00072208|Name=TCONS_00072208|organism=Clytia hemisphaerica|type=transcript|length=6849bpRun BLAST on NCBI protein sequence of TCONS_00072208-protein >TCONS_00072208-protein ID=TCONS_00072208-protein|Name=TCONS_00072208-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1868bp FKTVNKLLKMIPELNSGVSQILPVEEPKTTKKSPATSLKLRKVLFETKGLRun BLAST on NCBI transcript from alignment at scaffold_71:1069843..1101354- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00072208 ID=TCONS_00072208|Name=TCONS_00072208|organism=Clytia hemisphaerica|type=transcript|length=31512bp|location=Sequence derived from alignment at scaffold_71:1069843..1101354- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_71:1069843..1101354- >TCONS_00072208 ID=TCONS_00072208|Name=TCONS_00072208|organism=Clytia hemisphaerica|type=CDS|length=95319bp|location=Sequence derived from alignment at scaffold_71:1069843..1101354- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00072208 vs. Swiss-Prot (Human)
Match: VP13B (Vacuolar protein sorting-associated protein 13B OS=Homo sapiens GN=VPS13B PE=1 SV=2) HSP 1 Score: 318.931 bits (816), Expect = 6.294e-87 Identity = 212/696 (30.46%), Postives = 349/696 (50.14%), Query Frame = 3
Query: 3357 GVINICIADDSHPVVQITNKCSVILALREE-ENVNEKTTHHPVLESNMEKLYLLKPNIQTSFVPNNFKTTFPKLTNPIEFHCQFALYVANSVELSKPIKLSNHSSVTDLYVPAFGHITLTSFVHNSQLFVEIGNEGK-------DNVHPKTIHCLPFPNFNLNITSLDVILIDRINSQDMNAILSLSTSD------------LQIEHTKTNAKDKSSIQLSVGNLQLDNQISEDIRFHFPVILLPMRKI-----SQRYHKVTSDAPFADIQASPDADFFTLKILLSK-KDDCTSLDDVELCIQPFEMFLEDAYIYRLAELMKNYLPNIPGEQHAT-------VDPIS---SIRPVLFPLKTCKVHIAEISFLLSIHASVKVFLAADHIPLKLGAFDCQPTQTIRDEFVRVLLYHYATQVLVRVGWILGSLELIGNPTGLIHSIGRGISDFVTMPYHGLTRGPTAFVSGISHGLSSFVKHVSTGTLTSITNVSSSISRNLDRLCLDETHIQMQEERRAQVPTQTLSGLNNAMGSLGMSLLSAVAGLVDHSIQNISSANSTQEA----VTGAFSGLAKGVLGVFTKPLGGAMEFVSQTSQGILQGAGFVNIPERVNIFKFNDEVDSIGKRKSTSKILWKYLHCKETPFTFIAPCTNNTKTASKYSSFNDWLIITSSAVFLLDQEKGVVKMAFPLSDVE 5324
GV + +++D P V I N+C V + ++E +++ + + + S + L I +S+ K P L +E + ++++++ N +++ FG++ + +F+ + EGK N P+ I F + IT L + + D + +A L T D L E + +++ G+LQLDNQ+ FHF V++ K S+ + S+ +++ + F L I L++ K +++ ++P +++ED ++Y + L YLPN H+T V P+ R ++ P+K K+ I ++ L+SIHAS+K+++A+DH PL F+ P T + V L HYA L R GW++GSL+++G+P L+ SIG G++DF +PY GLTRGP AFVSG+S G +SFVKH+S GTLTSITN+++S++RN+DRL LDE H QEE R Q+P GL + LG+SLL A+AG+VD +QN + Q + G SG+ KG++GVFTKP+GGA E VSQT GIL GAG +P++ + ++ + S K +WK L P +A + L++TS +F++ + + AFP+++++
Sbjct: 3241 GVTYLTLSEDPSPRVIIHNRCPVKMLIKENIKDIPKFEVYCKKIPSECSIHHELYHQI-SSYPDCKTKDLLPSLLLRVEPLDEVTTEWSDAIDI-------NSQGTQVVFLTGFGYVYVDVVHQCGTVFITVAPEGKAGPILTNTNRAPEKIV-----TFKMFITQLSLAVFDDLTHHKASAELLRLTLDNIFLCVAPGAGPLPGEEPVAALFELYCVEICCGDLQLDNQLYNKSNFHFAVLVCQGEKAEPIQCSKMQSLLISNK---ELEEYKEKCFIKLCITLNEGKSILCDINEFSFELKPARLYVEDTFVYYIKTLFDTYLPNSRLAGHSTHLSGGKQVLPMQVTQHARALVNPVKLRKLVIQPVNLLVSIHASLKLYIASDHTPLSFSVFERGPIFTTARQLVHALAMHYAAGALFRAGWVVGSLDILGSPASLVRSIGNGVADFFRLPYEGLTRGPGAFVSGVSRGTTSFVKHISKGTLTSITNLATSLARNMDRLSLDEEHYNRQEEWRRQLPESLGEGLRQGLSRLGISLLGAIAGIVDQPMQNFQKTSEAQASAGHKAKGVISGVGKGIMGVFTKPIGGAAELVSQTGYGILHGAGLSQLPKQRHQ---PSDLHADQAPNSHVKYVWKMLQSLGRPEVHMA--LDVVLVRGSGQEHEGCLLLTSEVLFVVSVSEDTQQQAFPVTEID 3915 HSP 2 Score: 88.9669 bits (219), Expect = 3.222e-17 Identity = 93/434 (21.43%), Postives = 188/434 (43.32%), Query Frame = 3
Query: 1473 INEMDVLLSQSSLHTLLMTNQLWXXXXXXXXXXTILNHYVIRNRTEDVILFKQCEQEEELRLESGHTYPYSLFDHSS-HSLQFCLEQVENCAWSNDVRLNVEGVTTCVFEHEGYTSKLIVETKLIGGLQYEVVVHGS---CSFINNTSCPLHLKVITQKTENTLAQSQVADVTHSYN-LSSDDGQISLTASCDYIKEFCLYAGSRDDPIRADDNTDKVQFHKDLSKMFKMKVGGDMFWVSF--DQKKELANQTIVTFHPLFVVRNHLSQDITIQIGEETTTVN----LPAKGQETQISAACIDEEQTLKVTLDDHQQFTWTDITLSSSTHLKLNESKTLCNPHLNACN---------------WPYAKTETTKSSLNDSPGKTITLTDQNEQ--QVD--IIIEFSLKWEHLQTVVMDIKPCMLFCNETSRTLHI 2684
++ + V L Q +H+L Q W + + +H+VI N T++ + F Q + +E + L S H++ YS H S L C+E N WS ++ G ++ G T+ LI++ + + G+Q ++++ G CS+++ + + LKV+ ++ + Q A V ++ L++ S + + E C+ A +D R K + + ++ W + + Q ++ F PLF++R+HL I I + + + ++ +P KGQE + I+ + +T +++ +D + ST L + + T +P WPY K + +D+NEQ Q D + ++ S+ +++T+++++ P L NE+ L +
Sbjct: 2594 VDSVFVNLGQHVVHSLNTAIQAWQQNKCPEVEELVFSHFVICNDTQETLRFGQVDTDENILLASLHSHQYSWRSHKSPQLLHICIEGWGNWRWSEPFSVDHAGTFIRTIQYRGRTASLIIKVQQLNGVQKQIIICGRQIICSYLSQS---IELKVV----QHYIGQDGQAVVREHFDCLTAKQKLPSYILENNELTELCVKAKGDEDWSRDVCLESKAPEYSIVIQVPSSNSSIIYVWCTVLTLEPNSQVQQRMIVFSPLFIMRSHLPDPIIIHLEKRSLGLSETQIIPGKGQEKPLQN--IEPDLVHHLTFQAREEYDPSDCAVPISTSL-IKQIATKVHPGGTVNQILDEFYGPEKSLQPIWPYNKKD----------------SDRNEQLSQWDSPMRVKLSIWKPYVRTLLIELLPWALLINESKWDLWL 3001 The following BLAST results are available for this feature:
BLAST of TCONS_00072208 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.