TCONS_00072208-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00072208-protein
Unique NameTCONS_00072208-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1868

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00072208-protein ID=TCONS_00072208-protein|Name=TCONS_00072208-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1868bp
FKTVNKLLKMIPELNSGVSQILPVEEPKTTKKSPATSLKLRKVLFETKGL
HVVYSSTENISLKTGWHELNMEGTLGYNGDGGEMKEISSEVHWSGLFLST
KLNNDEMNLLSPLQMKINSQLQFSRDRPPMISISLVCGLIEFNIYQEFVE
IFEQLNTGMKMLLPTMYPQSKADSSSAAEKPVVVSNVGGDDEKGDCVENV
TVDDLRNGSFEYILVEDGIERTPCEMQVTFSSELDLVAPVMTWCYNEPRV
ITQLVSLPVPFHIPRDLTDQSDTAILEVDCCVQYFNEIQEEFVTCGTFCL
SENNSSSVILCDEKMLPNTTHYQSILWRIVIATAANSSRFNLATDLQNGR
APLKISPIPATSLAACLKINSCACPSLQPHFRCKADVKNLKVILRNPMES
EIKETKFPHDVPSSIESLELNLTSLNTSLMTCPSKALLHSNASFHVATMD
FHDLCWIDLISPTAFSLQLCKELKQISNDPHPVEDVVVLQINEMDVLLSQ
SSLHTLLMTNQLWSSLSKESSKSTILNHYVIRNRTEDVILFKQCEQEEEL
RLESGHTYPYSLFDHSSHSLQFCLEQVENCAWSNDVRLNVEGVTTCVFEH
EGYTSKLIVETKLIGGLQYEVVVHGSCSFINNTSCPLHLKVITQKTENTL
AQSQVADVTHSYNLSSDDGQISLTASCDYIKEFCLYAGSRDDPIRADDNT
DKVQFHKDLSKMFKMKVGGDMFWVSFDQKKELANQTIVTFHPLFVVRNHL
SQDITIQIGEETTTVNLPAKGQETQISAACIDEEQTLKVTLDDHQQFTWT
DITLSSSTHLKLNESKTLCNPHLNACNWPYAKTETTKSSLNDSPGKTITL
TDQNEQQVDIIIEFSLKWEHLQTVVMDIKPCMLFCNETSRTLHIKAKGGP
SWSLERSSVRHVFEMKEFSLMVQESTTRKDVWSPVIALTDQTLKSNNDVL
QKQSMKIGTTSYVTLLDKENNVCYQIVVQSKRCDGMIIMVLKERFALRNL
SNENVKVVPVMFQKPDAFKVLPSCTSLDVNNSSTLPFSMLNISTESTLKH
DKELPEGLAMNFILGQCDQGNQETSLINHHLTKENTFVLSEDHLREYIHL
KNSKNDISTFVLSSYLDEGVINICIADDSHPVVQITNKCSVILALREEEN
VNEKTTHHPVLESNMEKLYLLKPNIQTSFVPNNFKTTFPKLTNPIEFHCQ
FALYVANSVELSKPIKLSNHSSVTDLYVPAFGHITLTSFVHNSQLFVEIG
NEGKDNVHPKTIHCLPFPNFNLNITSLDVILIDRINSQDMNAILSLSTSD
LQIEHTKTNAKDKSSIQLSVGNLQLDNQISEDIRFHFPVILLPMRKISQR
YHKVTSDAPFADIQASPDADFFTLKILLSKKDDCTSLDDVELCIQPFEMF
LEDAYIYRLAELMKNYLPNIPGEQHATVDPISSIRPVLFPLKTCKVHIAE
ISFLLSIHASVKVFLAADHIPLKLGAFDCQPTQTIRDEFVRVLLYHYATQ
VLVRVGWILGSLELIGNPTGLIHSIGRGISDFVTMPYHGLTRGPTAFVSG
ISHGLSSFVKHVSTGTLTSITNVSSSISRNLDRLCLDETHIQMQEERRAQ
VPTQTLSGLNNAMGSLGMSLLSAVAGLVDHSIQNISSANSTQEAVTGAFS
GLAKGVLGVFTKPLGGAMEFVSQTSQGILQGAGFVNIPERVNIFKFNDEV
DSIGKRKSTSKILWKYLHCKETPFTFIAPCTNNTKTASKYSSFNDWLIIT
SSAVFLLDQEKGVVKMAFPLSDVEPHRQENETKDHVKLLFSLQRNHIEPS
STQNENLNHVLNMRQFFDSFDAACLTTKVEEMSSSSASKTGLSEHVLCVL
MAPLDAELFLLNFHMAQK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_044832XLOC_044832Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00072208TCONS_00072208Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR031645VPS13_C
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR031645Vacuolar protein sorting-associated protein 13, C-terminalPFAMPF16909VPS13_Ccoord: 1451..1591
e-value: 9.5E-29
score: 100.3

Blast
BLAST of TCONS_00072208-protein vs. Swiss-Prot (Human)
Match: VP13B (Vacuolar protein sorting-associated protein 13B OS=Homo sapiens GN=VPS13B PE=1 SV=2)

HSP 1 Score: 319.316 bits (817), Expect = 1.960e-87
Identity = 212/696 (30.46%), Postives = 349/696 (50.14%), Query Frame = 0
Query: 1119 GVINICIADDSHPVVQITNKCSVILALREE-ENVNEKTTHHPVLESNMEKLYLLKPNIQTSFVPNNFKTTFPKLTNPIEFHCQFALYVANSVELSKPIKLSNHSSVTDLYVPAFGHITLTSFVHNSQLFVEIGNEGK-------DNVHPKTIHCLPFPNFNLNITSLDVILIDRINSQDMNAILSLSTSD------------LQIEHTKTNAKDKSSIQLSVGNLQLDNQISEDIRFHFPVILLPMRKI-----SQRYHKVTSDAPFADIQASPDADFFTLKILLSK-KDDCTSLDDVELCIQPFEMFLEDAYIYRLAELMKNYLPNIPGEQHAT-------VDPIS---SIRPVLFPLKTCKVHIAEISFLLSIHASVKVFLAADHIPLKLGAFDCQPTQTIRDEFVRVLLYHYATQVLVRVGWILGSLELIGNPTGLIHSIGRGISDFVTMPYHGLTRGPTAFVSGISHGLSSFVKHVSTGTLTSITNVSSSISRNLDRLCLDETHIQMQEERRAQVPTQTLSGLNNAMGSLGMSLLSAVAGLVDHSIQNISSANSTQEA----VTGAFSGLAKGVLGVFTKPLGGAMEFVSQTSQGILQGAGFVNIPERVNIFKFNDEVDSIGKRKSTSKILWKYLHCKETPFTFIAPCTNNTKTASKYSSFNDWLIITSSAVFLLDQEKGVVKMAFPLSDVE 1774
            GV  + +++D  P V I N+C V + ++E  +++ +   +   + S     + L   I +S+     K   P L   +E   +     ++++++       N      +++  FG++ +        +F+ +  EGK        N  P+ I       F + IT L + + D +     +A L   T D            L  E       +   +++  G+LQLDNQ+     FHF V++    K      S+    + S+    +++   +  F  L I L++ K     +++    ++P  +++ED ++Y +  L   YLPN     H+T       V P+      R ++ P+K  K+ I  ++ L+SIHAS+K+++A+DH PL    F+  P  T   + V  L  HYA   L R GW++GSL+++G+P  L+ SIG G++DF  +PY GLTRGP AFVSG+S G +SFVKH+S GTLTSITN+++S++RN+DRL LDE H   QEE R Q+P     GL   +  LG+SLL A+AG+VD  +QN    +  Q +      G  SG+ KG++GVFTKP+GGA E VSQT  GIL GAG   +P++ +      ++ +     S  K +WK L     P   +A   +              L++TS  +F++   +   + AFP+++++
Sbjct: 3241 GVTYLTLSEDPSPRVIIHNRCPVKMLIKENIKDIPKFEVYCKKIPSECSIHHELYHQI-SSYPDCKTKDLLPSLLLRVEPLDEVTTEWSDAIDI-------NSQGTQVVFLTGFGYVYVDVVHQCGTVFITVAPEGKAGPILTNTNRAPEKIV-----TFKMFITQLSLAVFDDLTHHKASAELLRLTLDNIFLCVAPGAGPLPGEEPVAALFELYCVEICCGDLQLDNQLYNKSNFHFAVLVCQGEKAEPIQCSKMQSLLISNK---ELEEYKEKCFIKLCITLNEGKSILCDINEFSFELKPARLYVEDTFVYYIKTLFDTYLPNSRLAGHSTHLSGGKQVLPMQVTQHARALVNPVKLRKLVIQPVNLLVSIHASLKLYIASDHTPLSFSVFERGPIFTTARQLVHALAMHYAAGALFRAGWVVGSLDILGSPASLVRSIGNGVADFFRLPYEGLTRGPGAFVSGVSRGTTSFVKHISKGTLTSITNLATSLARNMDRLSLDEEHYNRQEEWRRQLPESLGEGLRQGLSRLGISLLGAIAGIVDQPMQNFQKTSEAQASAGHKAKGVISGVGKGIMGVFTKPIGGAAELVSQTGYGILHGAGLSQLPKQRHQ---PSDLHADQAPNSHVKYVWKMLQSLGRPEVHMA--LDVVLVRGSGQEHEGCLLLTSEVLFVVSVSEDTQQQAFPVTEID 3915          

HSP 2 Score: 142.124 bits (357), Expect = 1.754e-33
Identity = 166/745 (22.28%), Postives = 323/745 (43.36%), Query Frame = 0
Query:  203 DDLRNGSFEYILVEDGIERTPCEMQVTFSSELDLVAPVMTWCYNEPRVITQLVSLPVPFHIPRD----LTDQSDTAILEVDCCVQYFNEIQEEFVTCGTFCLSENNSSSVILCDEKMLPNTTHY-QSILWRIVIATAANSSRFNLATDLQNGRA---PLKISPIPATSLAACLKINSCACPSLQP-----------HFRCKADVKNLKVILRNPMESEIKETKFPHDVPSSIESLE---LNLTSLNTSLMTCPSKALLHSNASFHVATMDFHDLCWIDLISPTAFSLQLCKELKQISNDP-HPVEDVVVLQINEMDVLLSQSSLHTLLMTNQLWSSLSKESSKSTILNHYVIRNRTEDVILFKQCEQEEELRLESGHTYPYSLFDHSS-HSLQFCLEQVENCAWSNDVRLNVEGVTTCVFEHEGYTSKLIVETKLIGGLQYEVVVHGS---CSFINNTSCPLHLKVITQKTENTLAQSQVADVTHSYN-LSSDDGQISLTASCDYIKEFCLYAGSRDDPIRADDNTDKVQFHKDLSKMFKMKVGGDMFWVSF--DQKKELANQTIVTFHPLFVVRNHLSQDITIQIGEETTTVN----LPAKGQETQISAACIDEEQTLKVTLDDHQQFTWTDITLSSSTHLKLNESKTLCNPHLNACN---------------WPYAKTETTKSSLNDSPGKTITLTDQNEQ--QVD--IIIEFSLKWEHLQTVVMDIKPCMLFCNETSRTLHI 894
            DDLR G F+Y+   + + + P   +V F +E +    +M W Y EPRV+T +   PVPF+   D      D  D  +L+V C ++Y++E+Q+ FV    F LSE+    + L D  ++ +      S LWRIV+ ++ N +    +      ++   PL ++P   T+LAAC +++SC  P   P            F     +  L       ++  + +   P ++   I S     + L   N   +    + L  ++       ++  ++    ++ P +   Q+      +S+D    + D  V+ ++ + V L Q  +H+L    Q W        +  + +H+VI N T++ + F Q + +E + L S H++ YS   H S   L  C+E   N  WS    ++  G      ++ G T+ LI++ + + G+Q ++++ G    CS+++ +   + LKV+    ++ + Q   A V   ++ L++     S     + + E C+ A   +D  R      K   +  + ++          W +    +      Q ++ F PLF++R+HL   I I + + +  ++    +P KGQE  +    I+ +    +T    +++  +D  +  ST L + +  T  +P                     WPY K +                +D+NEQ  Q D  + ++ S+   +++T+++++ P  L  NE+   L +
Sbjct: 2300 DDLRTGLFQYVQDAESL-KLPGVYEVLFYNETEDCPGMMLWRYPEPRVLTLVRITPVPFNTTEDPDISTADLGD--VLQVPCSLEYWDELQKVFVAFREFNLSESKVCELQLPDINLVNDQKKLVSSDLWRIVLNSSQNGADDQSSASESGSQSTCDPL-VTP---TALAACTRVDSCFTPWFVPSLCVSFQFAHLEFHLCHHLDQLGTAAPQYLQPFVSDRNMPSELEYMIVSFREPHMYLRQWNNGSVCQEIQFLAQADCKL----LECRNVTMQSVVKPFSIFGQMA-----VSSDVVEKLLDCTVI-VDSVFVNLGQHVVHSLNTAIQAWQQNKCPEVEELVFSHFVICNDTQETLRFGQVDTDENILLASLHSHQYSWRSHKSPQLLHICIEGWGNWRWSEPFSVDHAGTFIRTIQYRGRTASLIIKVQQLNGVQKQIIICGRQIICSYLSQS---IELKVV----QHYIGQDGQAVVREHFDCLTAKQKLPSYILENNELTELCVKAKGDEDWSRDVCLESKAPEYSIVIQVPSSNSSIIYVWCTVLTLEPNSQVQQRMIVFSPLFIMRSHLPDPIIIHLEKRSLGLSETQIIPGKGQEKPLQN--IEPDLVHHLTFQAREEYDPSDCAVPISTSL-IKQIATKVHPGGTVNQILDEFYGPEKSLQPIWPYNKKD----------------SDRNEQLSQWDSPMRVKLSIWKPYVRTLLIELLPWALLINESKWDLWL 3001          
The following BLAST results are available for this feature:
BLAST of TCONS_00072208-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
VP13B1.960e-8730.46Vacuolar protein sorting-associated protein 13B OS... [more]
back to top