Overview
Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00072208-protein ID=TCONS_00072208-protein|Name=TCONS_00072208-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1868bpRun BLAST on NCBI Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Annotated Terms
The following terms have been associated with this polypeptide:
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
Blast
BLAST of TCONS_00072208-protein vs. Swiss-Prot (Human)
Match: VP13B (Vacuolar protein sorting-associated protein 13B OS=Homo sapiens GN=VPS13B PE=1 SV=2) HSP 1 Score: 319.316 bits (817), Expect = 1.960e-87 Identity = 212/696 (30.46%), Postives = 349/696 (50.14%), Query Frame = 0 Query: 1119 GVINICIADDSHPVVQITNKCSVILALREE-ENVNEKTTHHPVLESNMEKLYLLKPNIQTSFVPNNFKTTFPKLTNPIEFHCQFALYVANSVELSKPIKLSNHSSVTDLYVPAFGHITLTSFVHNSQLFVEIGNEGK-------DNVHPKTIHCLPFPNFNLNITSLDVILIDRINSQDMNAILSLSTSD------------LQIEHTKTNAKDKSSIQLSVGNLQLDNQISEDIRFHFPVILLPMRKI-----SQRYHKVTSDAPFADIQASPDADFFTLKILLSK-KDDCTSLDDVELCIQPFEMFLEDAYIYRLAELMKNYLPNIPGEQHAT-------VDPIS---SIRPVLFPLKTCKVHIAEISFLLSIHASVKVFLAADHIPLKLGAFDCQPTQTIRDEFVRVLLYHYATQVLVRVGWILGSLELIGNPTGLIHSIGRGISDFVTMPYHGLTRGPTAFVSGISHGLSSFVKHVSTGTLTSITNVSSSISRNLDRLCLDETHIQMQEERRAQVPTQTLSGLNNAMGSLGMSLLSAVAGLVDHSIQNISSANSTQEA----VTGAFSGLAKGVLGVFTKPLGGAMEFVSQTSQGILQGAGFVNIPERVNIFKFNDEVDSIGKRKSTSKILWKYLHCKETPFTFIAPCTNNTKTASKYSSFNDWLIITSSAVFLLDQEKGVVKMAFPLSDVE 1774 GV + +++D P V I N+C V + ++E +++ + + + S + L I +S+ K P L +E + ++++++ N +++ FG++ + +F+ + EGK N P+ I F + IT L + + D + +A L T D L E + +++ G+LQLDNQ+ FHF V++ K S+ + S+ +++ + F L I L++ K +++ ++P +++ED ++Y + L YLPN H+T V P+ R ++ P+K K+ I ++ L+SIHAS+K+++A+DH PL F+ P T + V L HYA L R GW++GSL+++G+P L+ SIG G++DF +PY GLTRGP AFVSG+S G +SFVKH+S GTLTSITN+++S++RN+DRL LDE H QEE R Q+P GL + LG+SLL A+AG+VD +QN + Q + G SG+ KG++GVFTKP+GGA E VSQT GIL GAG +P++ + ++ + S K +WK L P +A + L++TS +F++ + + AFP+++++ Sbjct: 3241 GVTYLTLSEDPSPRVIIHNRCPVKMLIKENIKDIPKFEVYCKKIPSECSIHHELYHQI-SSYPDCKTKDLLPSLLLRVEPLDEVTTEWSDAIDI-------NSQGTQVVFLTGFGYVYVDVVHQCGTVFITVAPEGKAGPILTNTNRAPEKIV-----TFKMFITQLSLAVFDDLTHHKASAELLRLTLDNIFLCVAPGAGPLPGEEPVAALFELYCVEICCGDLQLDNQLYNKSNFHFAVLVCQGEKAEPIQCSKMQSLLISNK---ELEEYKEKCFIKLCITLNEGKSILCDINEFSFELKPARLYVEDTFVYYIKTLFDTYLPNSRLAGHSTHLSGGKQVLPMQVTQHARALVNPVKLRKLVIQPVNLLVSIHASLKLYIASDHTPLSFSVFERGPIFTTARQLVHALAMHYAAGALFRAGWVVGSLDILGSPASLVRSIGNGVADFFRLPYEGLTRGPGAFVSGVSRGTTSFVKHISKGTLTSITNLATSLARNMDRLSLDEEHYNRQEEWRRQLPESLGEGLRQGLSRLGISLLGAIAGIVDQPMQNFQKTSEAQASAGHKAKGVISGVGKGIMGVFTKPIGGAAELVSQTGYGILHGAGLSQLPKQRHQ---PSDLHADQAPNSHVKYVWKMLQSLGRPEVHMA--LDVVLVRGSGQEHEGCLLLTSEVLFVVSVSEDTQQQAFPVTEID 3915 HSP 2 Score: 142.124 bits (357), Expect = 1.754e-33 Identity = 166/745 (22.28%), Postives = 323/745 (43.36%), Query Frame = 0 Query: 203 DDLRNGSFEYILVEDGIERTPCEMQVTFSSELDLVAPVMTWCYNEPRVITQLVSLPVPFHIPRD----LTDQSDTAILEVDCCVQYFNEIQEEFVTCGTFCLSENNSSSVILCDEKMLPNTTHY-QSILWRIVIATAANSSRFNLATDLQNGRA---PLKISPIPATSLAACLKINSCACPSLQP-----------HFRCKADVKNLKVILRNPMESEIKETKFPHDVPSSIESLE---LNLTSLNTSLMTCPSKALLHSNASFHVATMDFHDLCWIDLISPTAFSLQLCKELKQISNDP-HPVEDVVVLQINEMDVLLSQSSLHTLLMTNQLWSSLSKESSKSTILNHYVIRNRTEDVILFKQCEQEEELRLESGHTYPYSLFDHSS-HSLQFCLEQVENCAWSNDVRLNVEGVTTCVFEHEGYTSKLIVETKLIGGLQYEVVVHGS---CSFINNTSCPLHLKVITQKTENTLAQSQVADVTHSYN-LSSDDGQISLTASCDYIKEFCLYAGSRDDPIRADDNTDKVQFHKDLSKMFKMKVGGDMFWVSF--DQKKELANQTIVTFHPLFVVRNHLSQDITIQIGEETTTVN----LPAKGQETQISAACIDEEQTLKVTLDDHQQFTWTDITLSSSTHLKLNESKTLCNPHLNACN---------------WPYAKTETTKSSLNDSPGKTITLTDQNEQ--QVD--IIIEFSLKWEHLQTVVMDIKPCMLFCNETSRTLHI 894 DDLR G F+Y+ + + + P +V F +E + +M W Y EPRV+T + PVPF+ D D D +L+V C ++Y++E+Q+ FV F LSE+ + L D ++ + S LWRIV+ ++ N + + ++ PL ++P T+LAAC +++SC P P F + L ++ + + P ++ I S + L N + + L ++ ++ ++ ++ P + Q+ +S+D + D V+ ++ + V L Q +H+L Q W + + +H+VI N T++ + F Q + +E + L S H++ YS H S L C+E N WS ++ G ++ G T+ LI++ + + G+Q ++++ G CS+++ + + LKV+ ++ + Q A V ++ L++ S + + E C+ A +D R K + + ++ W + + Q ++ F PLF++R+HL I I + + + ++ +P KGQE + I+ + +T +++ +D + ST L + + T +P WPY K + +D+NEQ Q D + ++ S+ +++T+++++ P L NE+ L + Sbjct: 2300 DDLRTGLFQYVQDAESL-KLPGVYEVLFYNETEDCPGMMLWRYPEPRVLTLVRITPVPFNTTEDPDISTADLGD--VLQVPCSLEYWDELQKVFVAFREFNLSESKVCELQLPDINLVNDQKKLVSSDLWRIVLNSSQNGADDQSSASESGSQSTCDPL-VTP---TALAACTRVDSCFTPWFVPSLCVSFQFAHLEFHLCHHLDQLGTAAPQYLQPFVSDRNMPSELEYMIVSFREPHMYLRQWNNGSVCQEIQFLAQADCKL----LECRNVTMQSVVKPFSIFGQMA-----VSSDVVEKLLDCTVI-VDSVFVNLGQHVVHSLNTAIQAWQQNKCPEVEELVFSHFVICNDTQETLRFGQVDTDENILLASLHSHQYSWRSHKSPQLLHICIEGWGNWRWSEPFSVDHAGTFIRTIQYRGRTASLIIKVQQLNGVQKQIIICGRQIICSYLSQS---IELKVV----QHYIGQDGQAVVREHFDCLTAKQKLPSYILENNELTELCVKAKGDEDWSRDVCLESKAPEYSIVIQVPSSNSSIIYVWCTVLTLEPNSQVQQRMIVFSPLFIMRSHLPDPIIIHLEKRSLGLSETQIIPGKGQEKPLQN--IEPDLVHHLTFQAREEYDPSDCAVPISTSL-IKQIATKVHPGGTVNQILDEFYGPEKSLQPIWPYNKKD----------------SDRNEQLSQWDSPMRVKLSIWKPYVRTLLIELLPWALLINESKWDLWL 3001 The following BLAST results are available for this feature:
BLAST of TCONS_00072208-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens)) Total hits: 1
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