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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072205 ID=TCONS_00072205|Name=TCONS_00072205|organism=Clytia hemisphaerica|type=transcript|length=1819bpRun BLAST on NCBI protein sequence of TCONS_00072205-protein >TCONS_00072205-protein ID=TCONS_00072205-protein|Name=TCONS_00072205-protein|organism=Clytia hemisphaerica|type=polypeptide|length=346bp MTSFRKLVASTLTTDFRIACEIVRSNVGSLKPHEVLVKARYAGINATDINRun BLAST on NCBI transcript from alignment at scaffold_71:1012105..1045679- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00072205 ID=TCONS_00072205|Name=TCONS_00072205|organism=Clytia hemisphaerica|type=transcript|length=33575bp|location=Sequence derived from alignment at scaffold_71:1012105..1045679- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_71:1012105..1045679- >TCONS_00072205 ID=TCONS_00072205|Name=TCONS_00072205|organism=Clytia hemisphaerica|type=CDS|length=12492bp|location=Sequence derived from alignment at scaffold_71:1012105..1045679- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00072205 vs. Swiss-Prot (Human)
Match: PTGR3 (Prostaglandin reductase 3 OS=Homo sapiens GN=ZADH2 PE=1 SV=1) HSP 1 Score: 296.204 bits (757), Expect = 1.373e-93 Identity = 161/349 (46.13%), Postives = 231/349 (66.19%), Query Frame = 2
Query: 263 SFRKLVASTLTTDFRIACEIVRSNVGSLKPH-EVLVKARYAGINATDINYTAGRYTKPGTPLPLDAGLEGVGEIVDVGQEVPSS-MIGKPVGYLWNGAFAEYVKLPAKFCLPLPSVKPEYVGLLVSGMTASMCLQQSGRIQKGEAVFISAAAGGFGHLAVQLAKLHGCHVIGTCSSQQKTEYLKSLGCDHVINYVTEDLNEVLKKSYPKGIDVFIESVGGDVFNACVNRLATNGRLVVLGYIGSYHSQAGIDRSHRNATLMTKLLLKSATVSGFFLLNHPQEYKNHLPRLVELADQGKLQVKIDQTD--DQGKPFVGLESVYDAVDYLYSRKSQGKVVVDLTNS-NSKL 1294
+ +KLV + L+ +FR A + R L ++LV+ R+ G+NA+DINY+AGRY P P D G EG+GE+V +G + +G+ V Y+ G+FAEY +PA P+PSVKPEY+ LLVSG TA + L++ G + +G+ V ++AAAGG G A+QL+K CHVIGTCSS +K+ +LKSLGCD INY TE + VLK+ YP+G+DV ESVGG +F+ V+ LAT GRL+V+G+I Y + G+ + TL KLL KSA+V GFFL ++ +Y+ + L+E+ G L ++D D +G+ F GLES++ AV+Y+Y K+ GK+VV+L +S NSKL
Sbjct: 32 AMQKLVVTRLSPNFREAVTLSRDCPVPLPGDGDLLVRNRFVGVNASDINYSAGRY-DPSVKPPFDIGFEGIGEVVALGLSASARYTVGQAVAYMAPGSFAEYTVVPASIATPVPSVKPEYLTLLVSGTTAYISLKELGGLSEGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKSLGCDRPINYKTEPVGTVLKQEYPEGVDVVYESVGGAMFDLAVDALATKGRLIVIGFISGYQTPTGLS-PVKAGTLPAKLLKKSASVQGFFLNHYLSKYQAAMSHLLEMCVSGDLVCEVDLGDLSPEGR-FTGLESIFRAVNYMYMGKNTGKIVVELPHSVNSKL 377 The following BLAST results are available for this feature:
BLAST of TCONS_00072205 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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