TCONS_00072162 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072162
Unique NameTCONS_00072162
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2294

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072162 ID=TCONS_00072162|Name=TCONS_00072162|organism=Clytia hemisphaerica|type=transcript|length=2294bp
CTGACGAAGAGGTTCGCTATATAACTATCAAATATAGCGGCAACgaaaat
tactttcgatttcgaagGAAATTACACCGAGATAACAGTGGTCTGCAAAC
AGCGTTACAGCCTGGTGAAAAAAGTTTTGGCTTTACTTTCACAATACCTA
CGAATATACCGAGTTCTTATGAAGGCGATATTGGATACATTAAATACCAA
ATGTCAGCAAAGATAGATTATGTCAGAAAATCAACAGAAAATGTGAAAAG
AGTCatcaaaattgaagatttaatTGATTGTAATGAAGAAAAATACCTTC
GTGGAGTTAGTAGCACGAGAGAGACAAGTGTAGGATGTCTTTGTTGTAAA
GCTGGCACTCTTACGGTCAATGGTTTTGTGGATCGTTCCTGTTATTGCTA
TGGGGAAGATATTTTAGTATCTTTAGAAATTGATAATAACACGAGTCGAA
AAATGAGGAAATCGAAAGTCAAACTAGTTCGAAATGTAAGATATAGAGCA
ACTGGAAGTAATGGAAAAGTAAAAGATAAATGGTTCACTTATGAAGTCAA
TTCTTTAAAAGGAAGCGAAATTCCGAGAGGACTAACCATGAAGCAATGGG
ATAACAAGGCAATGACAGTACCGGAAAACTCACCTCCCACTATTTACAAT
TCATCAGTCATCGAAATATATTACCGTATCAAAATGAAAGTAGTCGTTCC
CTGGGGTATGGACGTTAAACTTGATCTACCAATCAGTATAGGTACAAAAC
CACTTGTTCAATCTATCGATAACCCGGCATCAGAAGATGGAGCAATATCC
TATCAATTACCATTTAATCCAAATCTACCAACTGTACCTTACCCCAGTAA
CCCTCCATCTGCACCAACTGATTTTACATATCCACCGATGCAACAGCCAT
ACTCAGCAGGATattcacaacaacaacaacaacaacaacaacaacaacaa
caacaaccccATGCAAGCTCAAATGATGCTAACCTCAATATTAATTATTC
TAAAGAGATGGAAGCAGACAGTGTAACTTTATCACCAAGTCCAATACCGC
AACCATGCCCACCACTACCATTACTAGGTTACAGCTTCCCTCCGCCCTCA
TATGACGAGGCTTTGAATAACTAATAACAGCTGGTATCGTTTTCAATATG
AGAGAGGATTGgtgaataaaaagaagaaactactGGTGCTTTGGAGAGCT
CTATTGGTTGTTGTATAGTTTACCAAAGCCACGCACACCATCATCATTAC
CAAATGACACCGCCCCTCCACCCTAATTGAATAAGGTTTTACGACATTTA
TGGCATTATCGCAAAAATCAAATTGCTTACACATTTGTtttaagcaactc
caatttcgGGTCAAAGCATTCTAgcttattttctgaaaaatttgcttgGA
CTAATCCTGATATTGTACCACATTTATGCTTATTAagtcaagggctatcg
ttttCCATGTTTAGAttttctaaaaagcttttactttacgagatagtgaa
aaaaTGGCTAATTTCAGGTTCAAGCCTAAGCAATCTGCGAAATCTGTTTG
TTTATAAAAAGATGTGTACAGTCGGATGACTTTACCAACAGCCTTGGGGC
CACTTTTAGCTTTTTGATAGTCTGGATAGGCGCTGATAAGTTTTCCGGTG
TTATTTGGCAGGTTTCACTCTTTGGCTTTGCACACACCACTAGATCAAGT
CTCTTTTTGGacgaaaaacaaacagaaaacccTATCCAATAAtacaccaa
ttttttttaaattttggaggtattttcatgtttttattattcATATACTT
TGATGGGGTTTTAgcatatattttattgttttgttgttttcttataattt
ttgaaaacgaaagtgaaaaaattcaagatatcctctagtctacttcactg
gactcgtagactctagtctacaatagaccttttcgtaAATTACTTTACAA
Acaacacttgcctcgttttgaaattattgccatggtgattaactcccagc
ggattttatcaaaactacttcataaaaaaataacttaatgtctcaagaga
cataatcaccatggtaattgtttgaatacgaggcaagtgatgttcgtgac
gtaatttatgaaaaggtctatggaTGAATGAAAAATGGTTCCGTTTTTCC
TTCAGTAAGTCTTAGAAAGCTTGAAACTCATTCCTACTGACAGATACAGA
GATTTTGTATAAGAACCAAAATTGTTTTAAGCTAATTGAGCTTTTTCAGG
GCACAAAACAGGTTTTTGTTTTTACCCTCTGAAAAAgtctaccg
Run BLAST on NCBI

protein sequence of TCONS_00072162-protein

>TCONS_00072162-protein ID=TCONS_00072162-protein|Name=TCONS_00072162-protein|organism=Clytia hemisphaerica|type=polypeptide|length=373bp
DEEVRYITIKYSGNENYFRFRRKLHRDNSGLQTALQPGEKSFGFTFTIPT
NIPSSYEGDIGYIKYQMSAKIDYVRKSTENVKRVIKIEDLIDCNEEKYLR
GVSSTRETSVGCLCCKAGTLTVNGFVDRSCYCYGEDILVSLEIDNNTSRK
MRKSKVKLVRNVRYRATGSNGKVKDKWFTYEVNSLKGSEIPRGLTMKQWD
NKAMTVPENSPPTIYNSSVIEIYYRIKMKVVVPWGMDVKLDLPISIGTKP
LVQSIDNPASEDGAISYQLPFNPNLPTVPYPSNPPSAPTDFTYPPMQQPY
SAGYSQQQQQQQQQQQQQPHASSNDANLNINYSKEMEADSVTLSPSPIPQ
PCPPLPLLGYSFPPPSYDEALNN
Run BLAST on NCBI

transcript from alignment at scaffold_71:361934..367104-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072162 ID=TCONS_00072162|Name=TCONS_00072162|organism=Clytia hemisphaerica|type=transcript|length=5171bp|location=Sequence derived from alignment at scaffold_71:361934..367104- (Clytia hemisphaerica)
CTGACGAAGAGGTTCGCTATATAACTATCAAATATAGCGGCAACGAAAAT
TACTTTCGATTTCGAAGGAAATTACACCGAGATAACAGTGGTCTGCAAAC
AGCGTTACAGCCTGGTGAAAAAAGTTTTGGCTTTACTTTCACAATACCTA
CGAATATACCGAGTTCTTATGAAGGCGATATTGGATACATTAAATACCAA
ATGTCAGGTATTAGATTTTTCTTGTTAGTAGGAACGAACGAGCATTATTT
GATAGAGTATGCTTTTACTATACAAGTTTTGAATTACTATCAGTCTTTAG
TAGTATTATAAAGTTGGTTGAGTTGACGTCAGGAATCTACTAAAATAGAT
GAATAACTCAATATTGCGACATCTTCACAAGAAAAGACAGAAGACTTTCA
AAAAAGAAACCACATTCCCTGTGATATCTAGCTGTACTCTTTGGATCAAC
TCAGATCTTTCCAAAAAGAAATCTTTAACGTTTCTTTCTAAATGACCGTT
CTACTCGTATTTCAGCAAAGATAGATTATGTCAGAAAATCAACAGAAAAT
GTGAAAAGAGTCATCAAAATTGAAGATTTAATTGATTGTAATGAAGAAAA
ATACCTTCGTGGAGTTAGTAGCACGAGAGAGACAAGTGTAGGATGTCTTT
GTTGTAAAGCTGGCACTCTTACGGTCAATGGTAAGCTTTTTGGCAAGGTT
TATTTTGGGAGGGGGCGTACGGGTTTGACGGTGTTATGGTATTAGTTCTT
GTTTCTGTCGGTATTTGAAGAAAATCGTTTTTGGTAAGGTTAATTTGATG
CGACTCGAATTCAGTGGTCCCACGCTACCAGGGGTCTAAGGGGCCATGGT
CATCTCACCTATTTTCAAACGATATCTTATTTTTTAAATATCACTGTACT
CATACTTTCAATAGCTTTGTTCTCGGCAATGTCACTCTGAAATAGCGTCA
TTTGAAGGCATATCAACATTTTCTATTTTTGGCCCCTTTACATTCTAGAC
GACCATAGCATGAAGGTAGAGCATCTAGCTACGGTGCGCAAGGTTTGTGG
GTTCGATCCCCAGTCGGTTCATACCAAAGATTCGCATAATGGTACTTGAT
GCCTCTCTGTTTGATGCTCAGCCTTTGGGTAAACAGCTATACGAAAAGGC
TACCCTTCGTAGATCTCAACTGCAGTCGCAGACTTACTTACATTCTAGAC
CATGGCGTGGGGGCGAATCAGTGAATTTTTCCAAATATTTTACATTCTTA
GGGTATTTTTCAGGTTTGTTCCTTTTTAGGTTTTGTGGATCGTTCCTGTT
ATTGCTATGGGGAAGATATTTTAGTATCTTTAGAAATTGATAATAACACG
AGTCGAAAAATGAGGAAATCGAAAGTCAAACTAGTTCGAAATGTAAGATA
TAGAGCAACTGGAAGTAATGGAAAAGTAAAAGATAAATGGTTCACTTATG
AAGTCAATTCTTTAAAAGGTACAAACGCTGCTGTTTTAATGACCCAGCCG
AAAAATCATGTCGCTTTGCAGGATTTGTACATGCTATGACTCGGTTAACT
TTCTCTTCAGCTTCCAATCTCTTAGTAGTTCTTTAAGCCAGTTAAAAAAC
TCACTGAAAAAATACACCTTTTCGACCGTAGCCGCGCGGGCATTTTTTTG
TCCGCTTTATTCAACTAAAACCATCCCAATTCTTTTTTGACGCATTTTTC
TATTGTCTATAGGTGCAAAAGAAAAGGACTGGGACGGCTTTACTGGGATA
AAGCGGACAAAAAAATGCCCGCTCGGCAATCGGTGGCTAAGGTCGAATAG
GTGTATATCCAATCACTGTACACCCCTTGCTCAGAACTTAAAGCTACAAA
ACACCCCTGTCTCATCATACTCGATATATTTTGTTGTTAGTTTCTTCGAA
AATCAAAGTTAATAAATAAATTCAATCTATAAAAAGGAAGCGAAATTCCG
AGAGGACTAACCATGAAGCAATGGGATAACAAGGCAATGACAGTACCGGA
AAACTCACCTCCCACTATTTACAATTCATCAGTCATCGAAATATATTACC
GTATCAAAATGAAAGTAGTCGTTCCCTGGGGTATGGACGTTAAACTTGAT
CTACCAATCAGTATAGGTACAAAACCACTTGTTCAATCTATCGATAACCC
GGCATCAGAAGATGGAGCAATATCCTATCAATTACCATTTAATCCAAATC
TACCAACTGTACCTTACCCCAGTAACCCTCCATCTGCACCAACTGATTTT
ACATATCCACCGATGCAACAGCCATACTCAGCAGGTATGTGATAAAAGGG
CTAATGGAGGATTCGATTTGAAATTCATTCATAACCCTATTAACCCAGCT
GGGCACACAGCGTTCTTTCAACGTTTATCTAACGTTCACAACATCCATAT
AACGTTAGATGAACGTTGAAACAACGTTGTGTGCCTGCTGGGAATCGAAT
TCAATTCTTTTTAGACCTTTATAATCCCGTGTATCGACCAGCAAAACAAC
CGGTCATGGATATCATAACAAAGATATTCGAAATTAGTGATCTAAAACCG
TTTAGGCCATTTCAAATTTTTTGCTCTTTATAGGACCAAATAATTAGGAT
GACTTCATTGAACGGTTCGGTTTTCTTCCCGATTTTCCTGCACCTGACTT
GACCCTTGATTTTGATATAGGGGATGCGTACCGTGTATGAAATTCTCATC
CGAGAGTGTTTTACCTAACAGACTGAGTGAATGATACGCTTTCTGTGTCT
CTTTACAGTCTTATCAAATTTGTGTAATGGCAACGAAAATGCTATAAAAT
GAAACAGGTTACCCCAAACTTGGGTAACTCTCGGACATGAGTTTTATACA
CTATTAGCATTCCCTATATATTAAATCTAATATTAAAACATATCAGAGGG
GATGCGTCCAGTCTAGACTTGACCTGATTTTGAGGACCTTATTGTAATTG
TGTCATTTTCAGACCAAATTATTCCTCTTACCCTTGGTATTCATAATATG
CACCACTGCGATGTCTTCTGACATTACGTCATGGAACCAATAGCTCATTG
GTTGGAAGTGATGTAAAAGCAGTCAATACGTCACTTTCAACCAATCAACT
ATTGGGTGGAACGGAAGACATTGCAATGGTGCATATCATGAATATCTTAA
AAAATAATTGCAATCTATAAATGATATATTGGGGTATCGCTTTTGTTATA
AAACTATTGCTCCTTAAAGAGAGTTGGAGTTTACTCCGCTTATTTTGCGG
TCATTTTAAACCCTTACATGCCTTCTAGGATATTCACAACAACAACAACA
ACAACAACAACAACAACAACAACAACCCCATGCAAGCTCAAATGATGCTA
ACCTCAATATTAATTATTCTAAAGAGATGGAAGCAGACAGTGGTAAGATT
TTTCTTATTTCAGTGAAGTTGATCAGCCATGAAAGAAATTTCCTCAGTAA
ATCTCCATTAAATAGACTGAGACTCAGACGGCTTTTTTTCTACGCAGTAA
CGCCTACCGCCTTACTTCGTCGGGGAAAAGTGACGAAATTTCGGACAAGT
GCCGAATATTTTCCCCGACGAATATCTTCCCCGGCCTTAATGCGTTTACT
AACTACCAGCAAGTGACGAATTTTTCCCTGACGAAAATTTCCCCGACGAA
AATTTTCCCCGATAAGGTATTCTAATTTGCTATTTTTTCGAATGTTTAGA
GATCAGGTTTTTGGACTCTAAACATTCGATGTTTTGACGTCATTTGATGG
TGAGGGTACGTACAGTAGGAAAAATTTGCGTCAAAACACTTTTTTCGAAA
ATCATCAAAGTGGAACCCACCAAGAAACAGCATATTCTTTCCCGCTATTT
GTTTTGTTGTGAGGTACTCGCGCTAAGAAACTATCTCCTTTTTCATTTAG
TAACTTTATCACCAAGTCCAATACCGCAACCATGCCCACCACTACCATTA
CTAGGTTACAGCTTCCCTCCGCCCTCATATGACGAGGCTTTGAATAACTA
ATAACAGCTGGTATCGTTTTCAATATGAGAGAGGATTGGTGAATAAAAAG
AAGAAACTACTGGTGCTTTGGAGAGCTCTATTGGTTGTTGTATAGTTTAC
CAAAGCCACGCACACCATCATCATTACCAAATGACACCGCCCCTCCACCC
TAATTGAATAAGGTTTTACGACATTTATGGCATTATCGCAAAAATCAAAT
TGCTTACACATTTGTTTTAAGCAACTCCAATTTCGGGTCAAAGCATTCTA
GCTTATTTTCTGAAAAATTTGCTTGGACTAATCCTGATATTGTACCACAT
TTATGCTTATTAAGTCAAGGGCTATCGTTTTCCATGTTTAGATTTTCTAA
AAAGCTTTTACTTTACGAGATAGTGAAAAAATGGCTAATTTCAGGTTCAA
GCCTAAGCAATCTGCGAAATCTGTTTGTTTATAAAAAGATGTGTACAGTC
GGATGACTTTACCAACAGCCTTGGGGCCACTTTTAGCTTTTTGATAGTCT
GGATAGGCGCTGATAAGTTTTCCGGTGTTATTTGGCAGGTTTCACTCTTT
GGCTTTGCACACACCACTAGATCAAGTCTCTTTTTGGACGAAAAACAAAC
AGAAAACCCTATCCAATAATACACCAATTTTTTTTAAATTTTGGAGGTAT
TTTCATGTTTTTATTATTCATATACTTTGATGGGGTTTTAGCATATATTT
TATTGTTTTGTTGTTTTCTTATAATTTTTGAAAACGAAAGTGAAAAAATT
CAAGATATCCTCTAGTCTACTTCACTGGACTCGTAGACTCTAGTCTACAA
TAGACCTTTTCGTAAATTACTTTACAAACAACACTTGCCTCGTTTTGAAA
TTATTGCCATGGTGATTAACTCCCAGCGGATTTTATCAAAACTACTTCAT
AAAAAAATAACTTAATGTCTCAAGAGACATAATCACCATGGTAATTGTTT
GAATACGAGGCAAGTGATGTTCGTGACGTAATTTATGAAAAGGTCTATGG
ATGAATGAAAAATGGTTCCGTTTTTCCTTCAGTAAGTCTTAGAAAGCTTG
AAACTCATTCCTACTGACAGATACAGAGATTTTGTATAAGAACCAAAATT
GTTTTAAGCTAATTGAGCTTTTTCAGGGCACAAAACAGGTTTTTGTTTTT
ACCCTCTGAAAAAGTCTACCG

Coding sequence (CDS) from alignment at scaffold_71:361934..367104-

>TCONS_00072162 ID=TCONS_00072162|Name=TCONS_00072162|organism=Clytia hemisphaerica|type=CDS|length=6732bp|location=Sequence derived from alignment at scaffold_71:361934..367104- (Clytia hemisphaerica)
TAACTTTATCACCAAGTCCAATACCGCAACCATGCCCACCACTACCATTA
CTAGGTTACAGCTTCCCTCCGCCCTCATATGACGAGGCTTTGAATAACTA
AGATATTCACAACAACAACAACAACAACAACAACAACAACAACAACAACC
CCATGCAAGCTCAAATGATGCTAACCTCAATATTAATTATTCTAAAGAGA
TGGAAGCAGACAGTGGAAGCGAAATTCCGAGAGGACTAACCATGAAGCAA
TGGGATAACAAGGCAATGACAGTACCGGAAAACTCACCTCCCACTATTTA
CAATTCATCAGTCATCGAAATATATTACCGTATCAAAATGAAAGTAGTCG
TTCCCTGGGGTATGGACGTTAAACTTGATCTACCAATCAGTATAGGTACA
AAACCACTTGTTCAATCTATCGATAACCCGGCATCAGAAGATGGAGCAAT
ATCCTATCAATTACCATTTAATCCAAATCTACCAACTGTACCTTACCCCA
GTAACCCTCCATCTGCACCAACTGATTTTACATATCCACCGATGCAACAG
CCATACTCAGCAGGTTTTGTGGATCGTTCCTGTTATTGCTATGGGGAAGA
TATTTTAGTATCTTTAGAAATTGATAATAACACGAGTCGAAAAATGAGGA
AATCGAAAGTCAAACTAGTTCGAAATGTAAGATATAGAGCAACTGGAAGT
AATGGAAAAGTAAAAGATAAATGGTTCACTTATGAAGTCAATTCTTTAAA
AGCAAAGATAGATTATGTCAGAAAATCAACAGAAAATGTGAAAAGAGTCA
TCAAAATTGAAGATTTAATTGATTGTAATGAAGAAAAATACCTTCGTGGA
GTTAGTAGCACGAGAGAGACAAGTGTAGGATGTCTTTGTTGTAAAGCTGG
CACTCTTACGGTCAATGGACGAAGAGGTTCGCTATATAACTATCAAATAT
AGCGGCAACGAAAATTACTTTCGATTTCGAAGGAAATTACACCGAGATAA
CAGTGGTCTGCAAACAGCGTTACAGCCTGGTGAAAAAAGTTTTGGCTTTA
CTTTCACAATACCTACGAATATACCGAGTTCTTATGAAGGCGATATTGGA
TACATTAAATACCAAATGTCAGTAACTTTATCACCAAGTCCAATACCGCA
ACCATGCCCACCACTACCATTACTAGGTTACAGCTTCCCTCCGCCCTCAT
ATGACGAGGCTTTGAATAACTAAGATATTCACAACAACAACAACAACAAC
AACAACAACAACAACAACAACCCCATGCAAGCTCAAATGATGCTAACCTC
AATATTAATTATTCTAAAGAGATGGAAGCAGACAGTGGAAGCGAAATTCC
GAGAGGACTAACCATGAAGCAATGGGATAACAAGGCAATGACAGTACCGG
AAAACTCACCTCCCACTATTTACAATTCATCAGTCATCGAAATATATTAC
CGTATCAAAATGAAAGTAGTCGTTCCCTGGGGTATGGACGTTAAACTTGA
TCTACCAATCAGTATAGGTACAAAACCACTTGTTCAATCTATCGATAACC
CGGCATCAGAAGATGGAGCAATATCCTATCAATTACCATTTAATCCAAAT
CTACCAACTGTACCTTACCCCAGTAACCCTCCATCTGCACCAACTGATTT
TACATATCCACCGATGCAACAGCCATACTCAGCAGGTTTTGTGGATCGTT
CCTGTTATTGCTATGGGGAAGATATTTTAGTATCTTTAGAAATTGATAAT
AACACGAGTCGAAAAATGAGGAAATCGAAAGTCAAACTAGTTCGAAATGT
AAGATATAGAGCAACTGGAAGTAATGGAAAAGTAAAAGATAAATGGTTCA
CTTATGAAGTCAATTCTTTAAAAGCAAAGATAGATTATGTCAGAAAATCA
ACAGAAAATGTGAAAAGAGTCATCAAAATTGAAGATTTAATTGATTGTAA
TGAAGAAAAATACCTTCGTGGAGTTAGTAGCACGAGAGAGACAAGTGTAG
GATGTCTTTGTTGTAAAGCTGGCACTCTTACGGTCAATGGACGAAGAGGT
TCGCTATATAACTATCAAATATAGCGGCAACGAAAATTACTTTCGATTTC
GAAGGAAATTACACCGAGATAACAGTGGTCTGCAAACAGCGTTACAGCCT
GGTGAAAAAAGTTTTGGCTTTACTTTCACAATACCTACGAATATACCGAG
TTCTTATGAAGGCGATATTGGATACATTAAATACCAAATGTCAGTAACTT
TATCACCAAGTCCAATACCGCAACCATGCCCACCACTACCATTACTAGGT
TACAGCTTCCCTCCGCCCTCATATGACGAGGCTTTGAATAACTAAGATAT
TCACAACAACAACAACAACAACAACAACAACAACAACAACAACCCCATGC
AAGCTCAAATGATGCTAACCTCAATATTAATTATTCTAAAGAGATGGAAG
CAGACAGTGGAAGCGAAATTCCGAGAGGACTAACCATGAAGCAATGGGAT
AACAAGGCAATGACAGTACCGGAAAACTCACCTCCCACTATTTACAATTC
ATCAGTCATCGAAATATATTACCGTATCAAAATGAAAGTAGTCGTTCCCT
GGGGTATGGACGTTAAACTTGATCTACCAATCAGTATAGGTACAAAACCA
CTTGTTCAATCTATCGATAACCCGGCATCAGAAGATGGAGCAATATCCTA
TCAATTACCATTTAATCCAAATCTACCAACTGTACCTTACCCCAGTAACC
CTCCATCTGCACCAACTGATTTTACATATCCACCGATGCAACAGCCATAC
TCAGCAGGTTTTGTGGATCGTTCCTGTTATTGCTATGGGGAAGATATTTT
AGTATCTTTAGAAATTGATAATAACACGAGTCGAAAAATGAGGAAATCGA
AAGTCAAACTAGTTCGAAATGTAAGATATAGAGCAACTGGAAGTAATGGA
AAAGTAAAAGATAAATGGTTCACTTATGAAGTCAATTCTTTAAAAGCAAA
GATAGATTATGTCAGAAAATCAACAGAAAATGTGAAAAGAGTCATCAAAA
TTGAAGATTTAATTGATTGTAATGAAGAAAAATACCTTCGTGGAGTTAGT
AGCACGAGAGAGACAAGTGTAGGATGTCTTTGTTGTAAAGCTGGCACTCT
TACGGTCAATGGACGAAGAGGTTCGCTATATAACTATCAAATATAGCGGC
AACGAAAATTACTTTCGATTTCGAAGGAAATTACACCGAGATAACAGTGG
TCTGCAAACAGCGTTACAGCCTGGTGAAAAAAGTTTTGGCTTTACTTTCA
CAATACCTACGAATATACCGAGTTCTTATGAAGGCGATATTGGATACATT
AAATACCAAATGTCAGTAACTTTATCACCAAGTCCAATACCGCAACCATG
CCCACCACTACCATTACTAGGTTACAGCTTCCCTCCGCCCTCATATGACG
AGGCTTTGAATAACTAAGATATTCACAACAACAACAACAACAACAACAAC
AACAACAACAACAACCCCATGCAAGCTCAAATGATGCTAACCTCAATATT
AATTATTCTAAAGAGATGGAAGCAGACAGTGGAAGCGAAATTCCGAGAGG
ACTAACCATGAAGCAATGGGATAACAAGGCAATGACAGTACCGGAAAACT
CACCTCCCACTATTTACAATTCATCAGTCATCGAAATATATTACCGTATC
AAAATGAAAGTAGTCGTTCCCTGGGGTATGGACGTTAAACTTGATCTACC
AATCAGTATAGGTACAAAACCACTTGTTCAATCTATCGATAACCCGGCAT
CAGAAGATGGAGCAATATCCTATCAATTACCATTTAATCCAAATCTACCA
ACTGTACCTTACCCCAGTAACCCTCCATCTGCACCAACTGATTTTACATA
TCCACCGATGCAACAGCCATACTCAGCAGGTTTTGTGGATCGTTCCTGTT
ATTGCTATGGGGAAGATATTTTAGTATCTTTAGAAATTGATAATAACACG
AGTCGAAAAATGAGGAAATCGAAAGTCAAACTAGTTCGAAATGTAAGATA
TAGAGCAACTGGAAGTAATGGAAAAGTAAAAGATAAATGGTTCACTTATG
AAGTCAATTCTTTAAAAGCAAAGATAGATTATGTCAGAAAATCAACAGAA
AATGTGAAAAGAGTCATCAAAATTGAAGATTTAATTGATTGTAATGAAGA
AAAATACCTTCGTGGAGTTAGTAGCACGAGAGAGACAAGTGTAGGATGTC
TTTGTTGTAAAGCTGGCACTCTTACGGTCAATGGACGAAGAGGTTCGCTA
TATAACTATCAAATATAGCGGCAACGAAAATTACTTTCGATTTCGAAGGA
AATTACACCGAGATAACAGTGGTCTGCAAACAGCGTTACAGCCTGGTGAA
AAAAGTTTTGGCTTTACTTTCACAATACCTACGAATATACCGAGTTCTTA
TGAAGGCGATATTGGATACATTAAATACCAAATGTCAGTAACTTTATCAC
CAAGTCCAATACCGCAACCATGCCCACCACTACCATTACTAGGTTACAGC
TTCCCTCCGCCCTCATATGACGAGGCTTTGAATAACTAAGATATTCACAA
CAACAACAACAACAACAACAACAACAACAACAACAACCCCATGCAAGCTC
AAATGATGCTAACCTCAATATTAATTATTCTAAAGAGATGGAAGCAGACA
GTGGAAGCGAAATTCCGAGAGGACTAACCATGAAGCAATGGGATAACAAG
GCAATGACAGTACCGGAAAACTCACCTCCCACTATTTACAATTCATCAGT
CATCGAAATATATTACCGTATCAAAATGAAAGTAGTCGTTCCCTGGGGTA
TGGACGTTAAACTTGATCTACCAATCAGTATAGGTACAAAACCACTTGTT
CAATCTATCGATAACCCGGCATCAGAAGATGGAGCAATATCCTATCAATT
ACCATTTAATCCAAATCTACCAACTGTACCTTACCCCAGTAACCCTCCAT
CTGCACCAACTGATTTTACATATCCACCGATGCAACAGCCATACTCAGCA
GGTTTTGTGGATCGTTCCTGTTATTGCTATGGGGAAGATATTTTAGTATC
TTTAGAAATTGATAATAACACGAGTCGAAAAATGAGGAAATCGAAAGTCA
AACTAGTTCGAAATGTAAGATATAGAGCAACTGGAAGTAATGGAAAAGTA
AAAGATAAATGGTTCACTTATGAAGTCAATTCTTTAAAAGCAAAGATAGA
TTATGTCAGAAAATCAACAGAAAATGTGAAAAGAGTCATCAAAATTGAAG
ATTTAATTGATTGTAATGAAGAAAAATACCTTCGTGGAGTTAGTAGCACG
AGAGAGACAAGTGTAGGATGTCTTTGTTGTAAAGCTGGCACTCTTACGGT
CAATGGACGAAGAGGTTCGCTATATAACTATCAAATATAGCGGCAACGAA
AATTACTTTCGATTTCGAAGGAAATTACACCGAGATAACAGTGGTCTGCA
AACAGCGTTACAGCCTGGTGAAAAAAGTTTTGGCTTTACTTTCACAATAC
CTACGAATATACCGAGTTCTTATGAAGGCGATATTGGATACATTAAATAC
CAAATGTCAGTAACTTTATCACCAAGTCCAATACCGCAACCATGCCCACC
ACTACCATTACTAGGTTACAGCTTCCCTCCGCCCTCATATGACGAGGCTT
TGAATAACTAAGATATTCACAACAACAACAACAACAACAACAACAACAAC
AACAACAACCCCATGCAAGCTCAAATGATGCTAACCTCAATATTAATTAT
TCTAAAGAGATGGAAGCAGACAGTGGAAGCGAAATTCCGAGAGGACTAAC
CATGAAGCAATGGGATAACAAGGCAATGACAGTACCGGAAAACTCACCTC
CCACTATTTACAATTCATCAGTCATCGAAATATATTACCGTATCAAAATG
AAAGTAGTCGTTCCCTGGGGTATGGACGTTAAACTTGATCTACCAATCAG
TATAGGTACAAAACCACTTGTTCAATCTATCGATAACCCGGCATCAGAAG
ATGGAGCAATATCCTATCAATTACCATTTAATCCAAATCTACCAACTGTA
CCTTACCCCAGTAACCCTCCATCTGCACCAACTGATTTTACATATCCACC
GATGCAACAGCCATACTCAGCAGGTTTTGTGGATCGTTCCTGTTATTGCT
ATGGGGAAGATATTTTAGTATCTTTAGAAATTGATAATAACACGAGTCGA
AAAATGAGGAAATCGAAAGTCAAACTAGTTCGAAATGTAAGATATAGAGC
AACTGGAAGTAATGGAAAAGTAAAAGATAAATGGTTCACTTATGAAGTCA
ATTCTTTAAAAGCAAAGATAGATTATGTCAGAAAATCAACAGAAAATGTG
AAAAGAGTCATCAAAATTGAAGATTTAATTGATTGTAATGAAGAAAAATA
CCTTCGTGGAGTTAGTAGCACGAGAGAGACAAGTGTAGGATGTCTTTGTT
GTAAAGCTGGCACTCTTACGGTCAATGGACGAAGAGGTTCGCTATATAAC
TATCAAATATAGCGGCAACGAAAATTACTTTCGATTTCGAAGGAAATTAC
ACCGAGATAACAGTGGTCTGCAAACAGCGTTACAGCCTGGTGAAAAAAGT
TTTGGCTTTACTTTCACAATACCTACGAATATACCGAGTTCTTATGAAGG
CGATATTGGATACATTAAATACCAAATGTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044816XLOC_044816Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072162-proteinTCONS_00072162-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072162-exon-scaffold_71-1575043694:366898..367104TCONS_00072162-exon-scaffold_71-1575043694:366898..367104Clytia hemisphaericaexon
TCONS_00072162-exon-scaffold_71-1575043694:366425..366589TCONS_00072162-exon-scaffold_71-1575043694:366425..366589Clytia hemisphaericaexon
TCONS_00072162-exon-scaffold_71-1575043694:365637..365825TCONS_00072162-exon-scaffold_71-1575043694:365637..365825Clytia hemisphaericaexon
TCONS_00072162-exon-scaffold_71-1575043694:364821..365168TCONS_00072162-exon-scaffold_71-1575043694:364821..365168Clytia hemisphaericaexon
TCONS_00072162-exon-scaffold_71-1575043694:363713..363826TCONS_00072162-exon-scaffold_71-1575043694:363713..363826Clytia hemisphaericaexon
TCONS_00072162-exon-scaffold_71-1575043694:361934..363204TCONS_00072162-exon-scaffold_71-1575043694:361934..363204Clytia hemisphaericaexon
TCONS_00072162-exon-scaffold_71-1510915933:366898..367104TCONS_00072162-exon-scaffold_71-1510915933:366898..367104Clytia hemisphaericaexon
TCONS_00072162-exon-scaffold_71-1510915933:366425..366589TCONS_00072162-exon-scaffold_71-1510915933:366425..366589Clytia hemisphaericaexon
TCONS_00072162-exon-scaffold_71-1510915933:365637..365825TCONS_00072162-exon-scaffold_71-1510915933:365637..365825Clytia hemisphaericaexon
TCONS_00072162-exon-scaffold_71-1510915933:364821..365168TCONS_00072162-exon-scaffold_71-1510915933:364821..365168Clytia hemisphaericaexon
TCONS_00072162-exon-scaffold_71-1510915933:363713..363826TCONS_00072162-exon-scaffold_71-1510915933:363713..363826Clytia hemisphaericaexon
TCONS_00072162-exon-scaffold_71-1510915933:361934..363204TCONS_00072162-exon-scaffold_71-1510915933:361934..363204Clytia hemisphaericaexon
TCONS_00072162-exon-scaffold_71-1491911889:366898..367104TCONS_00072162-exon-scaffold_71-1491911889:366898..367104Clytia hemisphaericaexon
TCONS_00072162-exon-scaffold_71-1491911889:366425..366589TCONS_00072162-exon-scaffold_71-1491911889:366425..366589Clytia hemisphaericaexon
TCONS_00072162-exon-scaffold_71-1491911889:365637..365825TCONS_00072162-exon-scaffold_71-1491911889:365637..365825Clytia hemisphaericaexon
TCONS_00072162-exon-scaffold_71-1491911889:364821..365168TCONS_00072162-exon-scaffold_71-1491911889:364821..365168Clytia hemisphaericaexon
TCONS_00072162-exon-scaffold_71-1491911889:363713..363826TCONS_00072162-exon-scaffold_71-1491911889:363713..363826Clytia hemisphaericaexon
TCONS_00072162-exon-scaffold_71-1491911889:361934..363204TCONS_00072162-exon-scaffold_71-1491911889:361934..363204Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_71supercontigscaffold_71:361934..367104 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.77386	2.00791	1.13686	1.01875	7.17076	4.7242	3.51799	2.37685	2.29369	2.63765	3.8938	2.8813	2.30453	1.97477	2.53295	1.62732	3.35359	3.72369	1.60746	2.89304	4.28302	4.84307	2.52774	4.07921	6.89837	5.59442	2.02696	1.61239	0.984438	1.61961
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011022Arrestin_C-like
IPR011021Arrestin-like_N
IPR014756Ig_E-set
Blast
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BLAST of TCONS_00072162 vs. Swiss-Prot (Human)
Match: ARRD4 (Arrestin domain-containing protein 4 OS=Homo sapiens GN=ARRDC4 PE=1 SV=3)

HSP 1 Score: 107.071 bits (266), Expect = 1.628e-24
Identity = 75/275 (27.27%), Postives = 136/275 (49.45%), Query Frame = 3 
Query:   48 NYFRFRRKLHRDNSGLQT-ALQPGEKSFGFTFTIPTN-IPSSYEGDIGYIKYQMSAKIDYVRKSTENVKRVIKIEDLIDCNEEKYLRGVSSTRETSVGCLCCKAGTLTVNGFVDRSCYCYGEDILVSLEIDNNTSRKMRKSKVKLVRNVRYRATGSNGKVKDKWFTYEVNSLKGSEIPRGLTMKQWDNKAMTVPENSPPTIYNSSVIEIYYRIKMKVVVPWGMDVKLDLPISIGTKPLVQSIDNPASEDGAISYQLPFNPNLPTVPYPSNPPSAP 866
             Y   R  L    +G     LQPG+  F F F +P+  + +S+ G  G I+Y + A ++  +   ++VKR +++   +D N    L  V  T+E  VGC    +G ++++  ++R  YC GE I +  EI+N +SR +   K  + +   Y A+G     K K   + V +++G+ I  G T   W+ K + +P  + P+I +  +I + Y + + + +P    + L+LP+ IGT P     +   S + +I+ Q   + +  T+  P  P + P
Sbjct:   89 EYLNVRLSLREPPAGEGIILLQPGKHEFPFRFQLPSEPLVTSFTGKYGSIQYCVRAVLERPKVPDQSVKRELQVVSHVDVNTPALLTPVLKTQEKMVGCWFFTSGPVSLSAKIERKGYCNGEAIPIYAEIENCSSR-LIVPKAAIFQTQTYLASG-----KTKTIRHMVANVRGNHIASGST-DTWNGKTLKIPPVT-PSILDCCIIRVDYSLAVYIHIPGAKKLMLELPLVIGTIPY----NGFGSRNSSIASQFSMDMSWLTLTLPEQPEAPP 351
The following BLAST results are available for this feature:
BLAST of TCONS_00072162 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ARRD41.628e-2427.27Arrestin domain-containing protein 4 OS=Homo sapie... [more]
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