TCONS_00072161 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072161
Unique NameTCONS_00072161
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2174

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072161 ID=TCONS_00072161|Name=TCONS_00072161|organism=Clytia hemisphaerica|type=transcript|length=2174bp
TTTCACAATACCTACGAATATACCGAGTTCTTATGAAGGCGATATTGGAT
ACATTAAATACCAAATGTCAGCAAAGATAGATTATGTCAGAAAATCAACA
GAAAATGTGAAAAGAGTCatcaaaattgaagatttaatTGATTGTAATGA
AGAAAAATACCTTCGTGGAGTTAGTAGCACGAGAGAGACAAGTGTAGGAT
GTCTTTGTTGTAAAGCTGGCACTCTTACGGTCAATGGTTTGTTCCTTTTT
AGGTTTTGTGGATCGTTCCTGTTATTGCTATGGGGAAGATATTTTAGTAT
CTTTAGAAATTGATAATAACACGAGTCGAAAAATGAGGAAATCGAAAGTC
AAACTAGTTCGAAATGTAAGATATAGAGCAACTGGAAGTAATGGAAAAGT
AAAAGATAAATGGTTCACTTATGAAGTCAATTCTTTAAAAGGAAGCGAAA
TTCCGAGAGGACTAACCATGAAGCAATGGGATAACAAGGCAATGACAGTA
CCGGAAAACTCACCTCCCACTATTTACAATTCATCAGTCATCGAAATATA
TTACCGTATCAAAATGAAAGTAGTCGTTCCCTGGGGTATGGACGTTAAAC
TTGATCTACCAATCAGTATAGGTACAAAACCACTTGTTCAATCTATCGAT
AACCCGGCATCAGAAGATGGAGCAATATCCTATCAATTACCATTTAATCC
AAATCTACCAACTGTACCTTACCCCAGTAACCCTCCATCTGCACCAACTG
ATTTTACATATCCACCGATGCAACAGCCATACTCAGCAGGATattcacaa
caacaacaacaacaacaacaacaacaacaacaacaaccccATGCAAGCTC
AAATGATGCTAACCTCAATATTAATTATTCTAAAGAGATGGAAGCAGACA
GTGTAACTTTATCACCAAGTCCAATACCGCAACCATGCCCACCACTACCA
TTACTAGGTTACAGCTTCCCTCCGCCCTCATATGACGAGGCTTTGAATAA
CTAATAACAGCTGGTATCGTTTTCAATATGAGAGAGGATTGgtgaataaa
aagaagaaactactGGTGCTTTGGAGAGCTCTATTGGTTGTTGTATAGTT
TACCAAAGCCACGCACACCATCATCATTACCAAATGACACCGCCCCTCCA
CCCTAATTGAATAAGGTTTTACGACATTTATGGCATTATCGCAAAAATCA
AATTGCTTACACATTTGTtttaagcaactccaatttcgGGTCAAAGCATT
CTAgcttattttctgaaaaatttgcttgGACTAATCCTGATATTGTACCA
CATTTATGCTTATTAagtcaagggctatcgttttCCATGTTTAGAttttc
taaaaagcttttactttacgagatagtgaaaaaaTGGCTAATTTCAGGTT
CAAGCCTAAGCAATCTGCGAAATCTGTTTGTTTATAAAAAGATGTGTACA
GTCGGATGACTTTACCAACAGCCTTGGGGCCACTTTTAGCTTTTTGATAG
TCTGGATAGGCGCTGATAAGTTTTCCGGTGTTATTTGGCAGGTTTCACTC
TTTGGCTTTGCACACACCACTAGATCAAGTCTCTTTTTGGacgaaaaaca
aacagaaaacccTATCCAATAAtacaccaattttttttaaattttggagg
tattttcatgtttttattattcATATACTTTGATGGGGTTTTAgcatata
ttttattgttttgttgttttcttataatttttgaaaacgaaagtgaaaaa
attcaagatatcctctagtctacttcactggactcgtagactctagtcta
caatagaccttttcgtaAATTACTTTACAAAcaacacttgcctcgttttg
aaattattgccatggtgattaactcccagcggattttatcaaaactactt
cataaaaaaataacttaatgtctcaagagacataatcaccatggtaattg
tttgaatacgaggcaagtgatgttcgtgacgtaatttatgaaaaggtcta
tggaTGAATGAAAAATGGTTCCGTTTTTCCTTCAGTAAGTCTTAGAAAGC
TTGAAACTCATTCCTACTGACAGATACAGAGATTTTGTATAAGAACCAAA
ATTGTTTTAAGCTAATTGAGCTTTTTCAGGGCACAAAACAGGTTTTTGTT
TTTACCCTCTGAAAAAgtctaccg
Run BLAST on NCBI

transcript from alignment at scaffold_71:361934..366968-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072161 ID=TCONS_00072161|Name=TCONS_00072161|organism=Clytia hemisphaerica|type=transcript|length=5035bp|location=Sequence derived from alignment at scaffold_71:361934..366968- (Clytia hemisphaerica)
TTTCACAATACCTACGAATATACCGAGTTCTTATGAAGGCGATATTGGAT
ACATTAAATACCAAATGTCAGGTATTAGATTTTTCTTGTTAGTAGGAACG
AACGAGCATTATTTGATAGAGTATGCTTTTACTATACAAGTTTTGAATTA
CTATCAGTCTTTAGTAGTATTATAAAGTTGGTTGAGTTGACGTCAGGAAT
CTACTAAAATAGATGAATAACTCAATATTGCGACATCTTCACAAGAAAAG
ACAGAAGACTTTCAAAAAAGAAACCACATTCCCTGTGATATCTAGCTGTA
CTCTTTGGATCAACTCAGATCTTTCCAAAAAGAAATCTTTAACGTTTCTT
TCTAAATGACCGTTCTACTCGTATTTCAGCAAAGATAGATTATGTCAGAA
AATCAACAGAAAATGTGAAAAGAGTCATCAAAATTGAAGATTTAATTGAT
TGTAATGAAGAAAAATACCTTCGTGGAGTTAGTAGCACGAGAGAGACAAG
TGTAGGATGTCTTTGTTGTAAAGCTGGCACTCTTACGGTCAATGGTAAGC
TTTTTGGCAAGGTTTATTTTGGGAGGGGGCGTACGGGTTTGACGGTGTTA
TGGTATTAGTTCTTGTTTCTGTCGGTATTTGAAGAAAATCGTTTTTGGTA
AGGTTAATTTGATGCGACTCGAATTCAGTGGTCCCACGCTACCAGGGGTC
TAAGGGGCCATGGTCATCTCACCTATTTTCAAACGATATCTTATTTTTTA
AATATCACTGTACTCATACTTTCAATAGCTTTGTTCTCGGCAATGTCACT
CTGAAATAGCGTCATTTGAAGGCATATCAACATTTTCTATTTTTGGCCCC
TTTACATTCTAGACGACCATAGCATGAAGGTAGAGCATCTAGCTACGGTG
CGCAAGGTTTGTGGGTTCGATCCCCAGTCGGTTCATACCAAAGATTCGCA
TAATGGTACTTGATGCCTCTCTGTTTGATGCTCAGCCTTTGGGTAAACAG
CTATACGAAAAGGCTACCCTTCGTAGATCTCAACTGCAGTCGCAGACTTA
CTTACATTCTAGACCATGGCGTGGGGGCGAATCAGTGAATTTTTCCAAAT
ATTTTACATTCTTAGGGTATTTTTCAGGTTTGTTCCTTTTTAGGTTTTGT
GGATCGTTCCTGTTATTGCTATGGGGAAGATATTTTAGTATCTTTAGAAA
TTGATAATAACACGAGTCGAAAAATGAGGAAATCGAAAGTCAAACTAGTT
CGAAATGTAAGATATAGAGCAACTGGAAGTAATGGAAAAGTAAAAGATAA
ATGGTTCACTTATGAAGTCAATTCTTTAAAAGGTACAAACGCTGCTGTTT
TAATGACCCAGCCGAAAAATCATGTCGCTTTGCAGGATTTGTACATGCTA
TGACTCGGTTAACTTTCTCTTCAGCTTCCAATCTCTTAGTAGTTCTTTAA
GCCAGTTAAAAAACTCACTGAAAAAATACACCTTTTCGACCGTAGCCGCG
CGGGCATTTTTTTGTCCGCTTTATTCAACTAAAACCATCCCAATTCTTTT
TTGACGCATTTTTCTATTGTCTATAGGTGCAAAAGAAAAGGACTGGGACG
GCTTTACTGGGATAAAGCGGACAAAAAAATGCCCGCTCGGCAATCGGTGG
CTAAGGTCGAATAGGTGTATATCCAATCACTGTACACCCCTTGCTCAGAA
CTTAAAGCTACAAAACACCCCTGTCTCATCATACTCGATATATTTTGTTG
TTAGTTTCTTCGAAAATCAAAGTTAATAAATAAATTCAATCTATAAAAAG
GAAGCGAAATTCCGAGAGGACTAACCATGAAGCAATGGGATAACAAGGCA
ATGACAGTACCGGAAAACTCACCTCCCACTATTTACAATTCATCAGTCAT
CGAAATATATTACCGTATCAAAATGAAAGTAGTCGTTCCCTGGGGTATGG
ACGTTAAACTTGATCTACCAATCAGTATAGGTACAAAACCACTTGTTCAA
TCTATCGATAACCCGGCATCAGAAGATGGAGCAATATCCTATCAATTACC
ATTTAATCCAAATCTACCAACTGTACCTTACCCCAGTAACCCTCCATCTG
CACCAACTGATTTTACATATCCACCGATGCAACAGCCATACTCAGCAGGT
ATGTGATAAAAGGGCTAATGGAGGATTCGATTTGAAATTCATTCATAACC
CTATTAACCCAGCTGGGCACACAGCGTTCTTTCAACGTTTATCTAACGTT
CACAACATCCATATAACGTTAGATGAACGTTGAAACAACGTTGTGTGCCT
GCTGGGAATCGAATTCAATTCTTTTTAGACCTTTATAATCCCGTGTATCG
ACCAGCAAAACAACCGGTCATGGATATCATAACAAAGATATTCGAAATTA
GTGATCTAAAACCGTTTAGGCCATTTCAAATTTTTTGCTCTTTATAGGAC
CAAATAATTAGGATGACTTCATTGAACGGTTCGGTTTTCTTCCCGATTTT
CCTGCACCTGACTTGACCCTTGATTTTGATATAGGGGATGCGTACCGTGT
ATGAAATTCTCATCCGAGAGTGTTTTACCTAACAGACTGAGTGAATGATA
CGCTTTCTGTGTCTCTTTACAGTCTTATCAAATTTGTGTAATGGCAACGA
AAATGCTATAAAATGAAACAGGTTACCCCAAACTTGGGTAACTCTCGGAC
ATGAGTTTTATACACTATTAGCATTCCCTATATATTAAATCTAATATTAA
AACATATCAGAGGGGATGCGTCCAGTCTAGACTTGACCTGATTTTGAGGA
CCTTATTGTAATTGTGTCATTTTCAGACCAAATTATTCCTCTTACCCTTG
GTATTCATAATATGCACCACTGCGATGTCTTCTGACATTACGTCATGGAA
CCAATAGCTCATTGGTTGGAAGTGATGTAAAAGCAGTCAATACGTCACTT
TCAACCAATCAACTATTGGGTGGAACGGAAGACATTGCAATGGTGCATAT
CATGAATATCTTAAAAAATAATTGCAATCTATAAATGATATATTGGGGTA
TCGCTTTTGTTATAAAACTATTGCTCCTTAAAGAGAGTTGGAGTTTACTC
CGCTTATTTTGCGGTCATTTTAAACCCTTACATGCCTTCTAGGATATTCA
CAACAACAACAACAACAACAACAACAACAACAACAACAACCCCATGCAAG
CTCAAATGATGCTAACCTCAATATTAATTATTCTAAAGAGATGGAAGCAG
ACAGTGGTAAGATTTTTCTTATTTCAGTGAAGTTGATCAGCCATGAAAGA
AATTTCCTCAGTAAATCTCCATTAAATAGACTGAGACTCAGACGGCTTTT
TTTCTACGCAGTAACGCCTACCGCCTTACTTCGTCGGGGAAAAGTGACGA
AATTTCGGACAAGTGCCGAATATTTTCCCCGACGAATATCTTCCCCGGCC
TTAATGCGTTTACTAACTACCAGCAAGTGACGAATTTTTCCCTGACGAAA
ATTTCCCCGACGAAAATTTTCCCCGATAAGGTATTCTAATTTGCTATTTT
TTCGAATGTTTAGAGATCAGGTTTTTGGACTCTAAACATTCGATGTTTTG
ACGTCATTTGATGGTGAGGGTACGTACAGTAGGAAAAATTTGCGTCAAAA
CACTTTTTTCGAAAATCATCAAAGTGGAACCCACCAAGAAACAGCATATT
CTTTCCCGCTATTTGTTTTGTTGTGAGGTACTCGCGCTAAGAAACTATCT
CCTTTTTCATTTAGTAACTTTATCACCAAGTCCAATACCGCAACCATGCC
CACCACTACCATTACTAGGTTACAGCTTCCCTCCGCCCTCATATGACGAG
GCTTTGAATAACTAATAACAGCTGGTATCGTTTTCAATATGAGAGAGGAT
TGGTGAATAAAAAGAAGAAACTACTGGTGCTTTGGAGAGCTCTATTGGTT
GTTGTATAGTTTACCAAAGCCACGCACACCATCATCATTACCAAATGACA
CCGCCCCTCCACCCTAATTGAATAAGGTTTTACGACATTTATGGCATTAT
CGCAAAAATCAAATTGCTTACACATTTGTTTTAAGCAACTCCAATTTCGG
GTCAAAGCATTCTAGCTTATTTTCTGAAAAATTTGCTTGGACTAATCCTG
ATATTGTACCACATTTATGCTTATTAAGTCAAGGGCTATCGTTTTCCATG
TTTAGATTTTCTAAAAAGCTTTTACTTTACGAGATAGTGAAAAAATGGCT
AATTTCAGGTTCAAGCCTAAGCAATCTGCGAAATCTGTTTGTTTATAAAA
AGATGTGTACAGTCGGATGACTTTACCAACAGCCTTGGGGCCACTTTTAG
CTTTTTGATAGTCTGGATAGGCGCTGATAAGTTTTCCGGTGTTATTTGGC
AGGTTTCACTCTTTGGCTTTGCACACACCACTAGATCAAGTCTCTTTTTG
GACGAAAAACAAACAGAAAACCCTATCCAATAATACACCAATTTTTTTTA
AATTTTGGAGGTATTTTCATGTTTTTATTATTCATATACTTTGATGGGGT
TTTAGCATATATTTTATTGTTTTGTTGTTTTCTTATAATTTTTGAAAACG
AAAGTGAAAAAATTCAAGATATCCTCTAGTCTACTTCACTGGACTCGTAG
ACTCTAGTCTACAATAGACCTTTTCGTAAATTACTTTACAAACAACACTT
GCCTCGTTTTGAAATTATTGCCATGGTGATTAACTCCCAGCGGATTTTAT
CAAAACTACTTCATAAAAAAATAACTTAATGTCTCAAGAGACATAATCAC
CATGGTAATTGTTTGAATACGAGGCAAGTGATGTTCGTGACGTAATTTAT
GAAAAGGTCTATGGATGAATGAAAAATGGTTCCGTTTTTCCTTCAGTAAG
TCTTAGAAAGCTTGAAACTCATTCCTACTGACAGATACAGAGATTTTGTA
TAAGAACCAAAATTGTTTTAAGCTAATTGAGCTTTTTCAGGGCACAAAAC
AGGTTTTTGTTTTTACCCTCTGAAAAAGTCTACCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044816XLOC_044816Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072161-exon-scaffold_71-1575043694:366898..366968TCONS_00072161-exon-scaffold_71-1575043694:366898..366968Clytia hemisphaericaexon
TCONS_00072161-exon-scaffold_71-1575043694:366425..366589TCONS_00072161-exon-scaffold_71-1575043694:366425..366589Clytia hemisphaericaexon
TCONS_00072161-exon-scaffold_71-1575043694:365637..365841TCONS_00072161-exon-scaffold_71-1575043694:365637..365841Clytia hemisphaericaexon
TCONS_00072161-exon-scaffold_71-1575043694:364821..365168TCONS_00072161-exon-scaffold_71-1575043694:364821..365168Clytia hemisphaericaexon
TCONS_00072161-exon-scaffold_71-1575043694:363713..363826TCONS_00072161-exon-scaffold_71-1575043694:363713..363826Clytia hemisphaericaexon
TCONS_00072161-exon-scaffold_71-1575043694:361934..363204TCONS_00072161-exon-scaffold_71-1575043694:361934..363204Clytia hemisphaericaexon
TCONS_00072161-exon-scaffold_71-1510915933:366898..366968TCONS_00072161-exon-scaffold_71-1510915933:366898..366968Clytia hemisphaericaexon
TCONS_00072161-exon-scaffold_71-1510915933:366425..366589TCONS_00072161-exon-scaffold_71-1510915933:366425..366589Clytia hemisphaericaexon
TCONS_00072161-exon-scaffold_71-1510915933:365637..365841TCONS_00072161-exon-scaffold_71-1510915933:365637..365841Clytia hemisphaericaexon
TCONS_00072161-exon-scaffold_71-1510915933:364821..365168TCONS_00072161-exon-scaffold_71-1510915933:364821..365168Clytia hemisphaericaexon
TCONS_00072161-exon-scaffold_71-1510915933:363713..363826TCONS_00072161-exon-scaffold_71-1510915933:363713..363826Clytia hemisphaericaexon
TCONS_00072161-exon-scaffold_71-1510915933:361934..363204TCONS_00072161-exon-scaffold_71-1510915933:361934..363204Clytia hemisphaericaexon
TCONS_00072161-exon-scaffold_71-1491911889:366898..366968TCONS_00072161-exon-scaffold_71-1491911889:366898..366968Clytia hemisphaericaexon
TCONS_00072161-exon-scaffold_71-1491911889:366425..366589TCONS_00072161-exon-scaffold_71-1491911889:366425..366589Clytia hemisphaericaexon
TCONS_00072161-exon-scaffold_71-1491911889:365637..365841TCONS_00072161-exon-scaffold_71-1491911889:365637..365841Clytia hemisphaericaexon
TCONS_00072161-exon-scaffold_71-1491911889:364821..365168TCONS_00072161-exon-scaffold_71-1491911889:364821..365168Clytia hemisphaericaexon
TCONS_00072161-exon-scaffold_71-1491911889:363713..363826TCONS_00072161-exon-scaffold_71-1491911889:363713..363826Clytia hemisphaericaexon
TCONS_00072161-exon-scaffold_71-1491911889:361934..363204TCONS_00072161-exon-scaffold_71-1491911889:361934..363204Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_71supercontigscaffold_71:361934..366968 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.218631	0	4.35676e-08	0	1.65294	2.17953	1.08306	2.04849	0.604649	0.837105	0.44558	0.148776	1.07698	0.593173	2.3288e-06	0.233565	1.72431	0.35027	0.658086	0.438236	0.184703	3.07424e-08	0	0	0.284262	0.91952	0.500401	0.492609	0.77094	0.00693192
Blast
[Close]
BLAST of TCONS_00072161 vs. Swiss-Prot (Human)
Match: ARRD3 (Arrestin domain-containing protein 3 OS=Homo sapiens GN=ARRDC3 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.665e-16
Identity = 51/165 (30.91%), Postives = 84/165 (50.91%), Query Frame = 3 
Query:  258 VDRSCYCYGEDILVSLEIDNNTSRKMRKSKVKLVRNVRYRATGSNGKVKDKWFTYEVNSLKGSEIPRGLTMKQWDNKAMTVPENSPPTIYNSSVIEIYYRIKMKVVVPWGMDVKLDLPISIGTKPLVQSIDNP-ASEDGAISYQLPFNPNLPTVPYPSNPPSAPT 749
            ++R  Y  GE I +  EI+N +SR M   K  + +   + A G   +VK       V +L+G  +  G T + W+ K + +P  SP +I + S+I + Y + + V +P  MD+ L+LP+ IGT PL     +P  S   ++S Q   N N  ++  P  P + P+
Sbjct:  197 IERKGYTPGESIQIFAEIENCSSR-MVVPKAAIYQTQAFYAKGKMKEVKQL-----VANLRGESLSSGKT-ETWNGKLLKIPPVSP-SILDCSIIRVEYSLMVYVDIPGAMDLFLNLPLVIGTIPL-----HPFGSRTSSVSSQCSMNMNWLSLSLPERPEAPPS 348

HSP 2 Score: 36.1946 bits (82), Expect = 5.665e-16
Identity = 19/80 (23.75%), Postives = 41/80 (51.25%), Query Frame = 2 
Query:    2 FTIP-TNIPSSYEGDIGYIKYQMSAKIDYVRKSTENVKRVIKIEDLIDCNEEKYLRGVSSTRETSVGCLCCKAGTLTVNG 238
            F +P T + +S+EG  G ++Y + A++         +K+   + + ID N    L   + T+E ++ C  C +G ++++ 
Sbjct:  116 FELPQTPLATSFEGRHGSVRYWVKAELHRPWLLPVKLKKEFTVFEHIDINTPSLLSPQAGTKEKTLCCWFCTSGPISLSA 195
The following BLAST results are available for this feature:
BLAST of TCONS_00072161 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ARRD35.665e-1630.91Arrestin domain-containing protein 3 OS=Homo sapie... [more]
back to top