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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072143 ID=TCONS_00072143|Name=TCONS_00072143|organism=Clytia hemisphaerica|type=transcript|length=1069bp
tgcgcgcttcgatcgcactttttcgagcaaagcttccacgctattggtca
aaagaaaaatgaagcaactccattggcgcaaTCTGACTACAACGGTATTT
GATCGAACGTACTTGGCTTTACCAACTTTTAGCCTTCTAGTCTCTAGTTA
CAACCGGTCTCAGTAtttttaatgaatatttttggatcTCTTATGATTAA
TCTTACCTAGGTAATAACTTGGATCACTTTTCCATGATTTTTCATTTAGT
GTGATGTAACAATCAAAATGGTGATGAGAAAGGACAGTATTGAAAATCGG
TCACTATTACACGCTACGAAAATTGGGTTGTATTATTAAATATCTTGAAA
TTTGACGCTATCGAGTATTGGATGCTTTCATCTGTTGGAAAATCGTATTG
GATTCGTAATTCAAACCCGTTAGTAGTTAGACACGGCAAAGAAGAGAAAC
AGCGaaacttTCTTCCCATCGTTACGAAAGACTACCGAGAcctagaagtt
tgttttttacgAAGAAATCATCAATATATGCNctgtaaacttggcaatcc
ttcatcaaatgataagatttttcgatcaatgttttccttaaaatgaactc
tattgcttgatactttcctccaaaattctccagcgactttatgtctacag
attgagtctgaaatcgtgtgtgattataaagaacttttcattttctggct
tgagaaaatatcttttcaaaacaaaattgaacNGAGTGACACTTCTCGAG
TCAAACAGATGCCATTTCTGCATTATTTATACACTCaattgttcttagaa
aaaagcaaagaatgCACGCCTGTTTCAGTGACCCGGTAGCTTTTATAATT
TCACCGTGgataacatttttctttgtaaatccATTATAATTTCCCGGGGA
GCAGAGGGCACTAGGTTTGCGGGATAATGTGCTGCCCGCGGTTTTTGGCG
GGCCCTTTTATGGAGGGAGCGAAACGGACACTTAAAGGGACTTACATCGT
GGAAAAATCCACATTTTAGTGTTTTCATGATTTTCCTATTAAGACCATTA
TACCTAAAATTTAGGCTTT Run BLAST on NCBI transcript from alignment at scaffold_71:80227..83304- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072143 ID=TCONS_00072143|Name=TCONS_00072143|organism=Clytia hemisphaerica|type=transcript|length=3078bp|location=Sequence derived from alignment at scaffold_71:80227..83304- (Clytia hemisphaerica)
TGCGCGCTTCGATCGCACTTTTTCGAGCAAAGCTTCCACGCTATTGGTCA
AAAGAAAAATGAAGCAACTCCATTGGCGCAATCTGACTACAACGGTATTT
GATCGAACGTACTTGGCTTTACCAACTTTTAGCCTTCTAGTCTCTAGTTA
CAACCGGTCTCAGTATTTTTAATGAATATTTTTGGATCTCTTATGATTAA
TCTTACCTAGGTAATAACTTGGATCACTTTTCCATGATTTTTCATTTAGT
GTGATGTAACAATCAAAATGGTGATGAGAAAGGACAGTATTGAAAATCGG
TCACTATTACACGCTACGAAAATTGGGTTGTATTATTAAATATCTTGAAA
TGTATAATACTTTTTAATACAAACATGTTTCTTTTATTATGGTGTTAATG
CAAGTATAACAAGTGATACTTTTATGGACCTACCTGGTTATGCATTTAAC
ACATATATAATTGATATCTACGTGAGCATGAACGTTAAACAATCATTTAG
AACACAAATAGTGACGATTTATTAAAATTAGTCAATTGTTTCTTATAAAA
AAAAACGTTTAGAAACCAAAATTTCATGCTCTTGAAATATTCTTTCATAT
TCAAGATTTCGTGAGCATAAAAAGACATATCTGCTATCTTTTACCTACTT
TCATGCAAAATCAGAAAAAAACAACGATCCAATATTTCACAATGTCCAAA
AAACCCTTTTTTTAGCCGTTTTTTGGCCCAAATTTGCCCGAAAACATTGT
TTTTTTGAAAATCGGGCTCCGTCACATTCGAGGGTTTATAGTTATGCATC
TTTGTGCAAAAAATCATAAAGAATGAAAGAGCCAATCTCGAGAAAAGCNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNTTGGCCAGTTTTTCTATAAAAACACGCCAAGC
AACCAAAATTTCATGTCTAAACACACTTATGCTTCAAAAGTAAGCCCTCG
TGAGCAAAAAAAACATCTATCTCATAAAGGAATGGAGTAATTTGACTAAG
AACATTGATGTATGCTTATTAATAGTGATTCTTATAGATAAACATAGTTT
TTTTAAGCCAAATAAATTTTTTTGCAAAAATCTGCTTGAGCCATGTTTCA
CCTATGATGGTACCCTACTTTCATGCAAAAAATCAGAAAAAATTAATGAT
CCAATTTTTCACAAAGTCCAAAAAACCCGTTTTTTAGCCGTTTTTTGGCC
CAAATTTGCCCAAAAAAATTTGTTTTCGAAAATCGGGCTCCGTCACATTT
TCGCCACCACCGTTTTGCACCTTTGTACCAAAAATCAAATGATTCCTATG
ATTCAATCTCGAGAAAAGCTGGTAACGAACGGACGGACGGACAGAGGTGA
ATTCGGACAGAGGTGAATTTATAGGACCTCCACCCCACCGGGGTAGGTCC
AAAAATGAAATTCCATAAAAAAATTTTCTTATGTTGAGATAATATCAATA
TCCAAACGCCTACGCTTCATTACCGTGAAGAAAAACCTCACTGGTTTGAT
CCTACTACCTGAAGGTGACTTTCGAGTGAACTAATTTTCGGCAAAAAGAG
GTCGTCTACCGCGAAAATTAGTTCCGCAAAATACGCCAAATTAGAACCCT
CGCACCGCAAAAATCAGTTGGTATTAAAGACTTACCCAATTTACATTTCA
GTTGACGCTATCGAGTATTGGATGCTTTCATCTGTTGGAAAATCGTATTG
GATTCGTAATTCAAACCCGTTAGTAGTTAGACACGGCAAAGAAGAGAAAC
AGCGGTAAGAAACTATTAAATCCGTTATTTTGGGAATATATGATCATTGC
TCATTATAATATGAGGAAATATCAAATGAATCGTTGTCAATCCACTTTTT
TTTGTCAGCCGTTTATTTTCAAGAACTCATTAGGTTGTTATTTTTTCTAT
TTTTTTATTTCAGAAACTTTCTTCCCATCGTTACGAAAGACTACCGAGAC
CTAGAAGTTTGTTTTTTACGAAGAAATCATCAATATATGCNCTGTAAACT
TGGCAATCCTTCATCAAATGATAAGATTTTTCGATCAATGTTTTCCTTAA
AATGAACTCTATTGCTTGATACTTTCCTCCAAAATTCTCCAGCGACTTTA
TGTCTACAGATTGAGTCTGAAATCGTGTGTGATTATAAAGAACTTTTCAT
TTTCTGGCTTGAGAAAATATCTTTTCAAAACAAAATTGAACNGAGTGACA
CTTCTCGAGTCAAACAGATGCCATTTCTGCATTATTTATACACTCAATTG
TTCTTAGAAAAAAGCAAAGAATGCACGCCTGTTTCAGTGACCCGGTAGCT
TTTATAATTTCACCGTGGATAACATTTTTCTTTGTAAATCCATTATAATT
TCCCGGGGAGCAGAGGGCACTAGGTTTGCGGGATAATGTGCTGCCCGCGG
TTTTTGGCGGGCCCTTTTATGGAGGGAGCGAAACGGACACTTAAAGGGAC
TTACATCGTGGAAAAATCCACATTTTAGTGTTTTCATGATTTTCCTATTA
AGACCATTATACCTAAAATTTAGGCTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072143-exon-scaffold_71-1575043694:82954..83304 | TCONS_00072143-exon-scaffold_71-1575043694:82954..83304 | Clytia hemisphaerica | exon |
| TCONS_00072143-exon-scaffold_71-1575043694:81001..81103 | TCONS_00072143-exon-scaffold_71-1575043694:81001..81103 | Clytia hemisphaerica | exon |
| TCONS_00072143-exon-scaffold_71-1575043694:80227..80841 | TCONS_00072143-exon-scaffold_71-1575043694:80227..80841 | Clytia hemisphaerica | exon |
| TCONS_00072143-exon-scaffold_71-1510915933:82954..83304 | TCONS_00072143-exon-scaffold_71-1510915933:82954..83304 | Clytia hemisphaerica | exon |
| TCONS_00072143-exon-scaffold_71-1510915933:81001..81103 | TCONS_00072143-exon-scaffold_71-1510915933:81001..81103 | Clytia hemisphaerica | exon |
| TCONS_00072143-exon-scaffold_71-1510915933:80227..80841 | TCONS_00072143-exon-scaffold_71-1510915933:80227..80841 | Clytia hemisphaerica | exon |
| TCONS_00072143-exon-scaffold_71-1491911889:82954..83304 | TCONS_00072143-exon-scaffold_71-1491911889:82954..83304 | Clytia hemisphaerica | exon |
| TCONS_00072143-exon-scaffold_71-1491911889:81001..81103 | TCONS_00072143-exon-scaffold_71-1491911889:81001..81103 | Clytia hemisphaerica | exon |
| TCONS_00072143-exon-scaffold_71-1491911889:80227..80841 | TCONS_00072143-exon-scaffold_71-1491911889:80227..80841 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_71 | supercontig | scaffold_71:80227..83304 - |
Blast
The following BLAST results are available for this feature:
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