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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072138 ID=TCONS_00072138|Name=TCONS_00072138|organism=Clytia hemisphaerica|type=transcript|length=1070bp
CAGAAGCAAAAGATCCTGAACAAAACTGTTGTGAATCAAAGgGGAGTTAC
GAAGAGTGTACAACGAGGACAAGGAGGAATTGATTAGTGTACTTAATTGG
TATGAAATCTCATGTCAAATCGGCCGAAACTTCGGCGGAATCCTACTATT
GTGTGCCAGTCTCGTTTCCTTTTATATTGGACAATGGAAACTTGATCGTT
TGAATTTCAACAACCTGCTTCTTTCGATGGCTTGTTTCACACTATTCTTA
TTCTCAATATTCAAAGTGAAAAATGCTTCAAGACGTTTGGATGAGATTAG
GTCCAAATACAGAGTCGTTGGAAAGAAAAGAGCAAGCTCAACCGAACAAA
AACCTCTGATGGAATGGTACGATTTTGTTCAATTTGATATTGTTCTGATG
TTAGTTGCAACAAGCATTTTGCGTTACGTAACGATGGCAACCATCGCTTA
CACCACTCTCCTGACAACCACGGTATACGCATGGAAAGCTAATAATCTGT
TTGCAATGTTCTTTGTCACCAATATAATAGCAATGGTTTCACTTACTCTA
CTTGCCAAATGGGACGTTGTGAAGGGTGCCAAAAGAGCCTTCTATCTTTT
CATACTGGCTTTAGTGGCTGGAGCAGTCCTTCTGATATCCTTTATGTTGA
CCAAAGCTGGTCTCTTGGATACATTCACAAAACAATTGATCTTTTTTGGA
ATGATGAAAATTGGTAAAAGTATTTGTTTGTATTTCACGAACACATCTGG
CAGTTTTCTGTTATTCAGTTTGGTATCCCCTGAAAACAGCAGCTCCATAG
CTGGGTTTAAGTCATTCTTCAACGTTTCCATGAAGTGTTTATCATATTTG
ACAGCCTTCAAGGCGGCTTATTTACCCGAGTACGCGTCACCACCTGTagc
catatttatttttatttgtgcTTACATGTTGTTATATCGAAGAGGAAATT
TTCTTAAATGATGAAATTTGTTTATGATGTATATATATACAACGTCAAGC
CTTTTATTTTAGATAGTTTTTTTATAGAAcaatgaaaagtaaatattgaT
TTTATTATTCTTATTCGTGC Run BLAST on NCBI transcript from alignment at scaffold_71:1072231..1074858+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072138 ID=TCONS_00072138|Name=TCONS_00072138|organism=Clytia hemisphaerica|type=transcript|length=2628bp|location=Sequence derived from alignment at scaffold_71:1072231..1074858+ (Clytia hemisphaerica)
CAGAAGCAAAAGATCCTGAACAAAACTGTTGTGAATCAAAGGTATTTATG
CTAAGGAAAAAGTAGATATAAGAGTTGGTTAGGTTACTCTCAAGTTTCAT
TTTTTCGAGTCTCTGGGTCGCAACAATCCTTTAAACTTTTACATGTTAAT
AGAAACCGTACATCCTTtacccaagttcaggagttgccgtAAAGCcataa
taaccgggagggcacattgctatacattgtagaGATTTATATATACTATA
TATATTTATTATAtctattcttttgtattttcatttctaCTTTTAAGTTT
AGGCGGAAGAACAATTCGTATAAATTGAAGCCAATTAtatgtaaaataaa
aacaaaaaaataaaaaaaaacagacaggCTGTCCATGGAAAAGAACGAGG
AGTACCAAGCATGGAAAAAAGAGAGGAAGATTTTTCGCTGGGTTGCAACA
ATAGCTATCCTCTTTTACGGGTTGGAATCTCAACTAACCACGTTATCGAT
AGTATATTATATGATGGATAGATACCATATCACCAAAGATCAAGTATCGG
TGTACTACAGTATTGCCCAGTCTCTTTTCGCTGGCGTTCAAATGTTCTCT
TCGTTGGTATTAGGGCGGTATGTAGACCACACAAGAAATATAAGGAAGAT
TCTGATCATTGTAATGGCAATCTCCAGTCTTTGCAACTTGGTGTATACAC
TACCTCTACCTATTTGGATTGTGGTGGGAACTAGAAGCTTGATGGGTGTC
ACTGAATGTCTGCAGTCCGCTGTTTTAGGTGTGTACGAGGCCTTGGGTAC
ACGTTTTTAAGGTATATAGAGTAGACGTTCTCAttacagatttataaagc
ccgaagggctagatgtcgtgctttggctgaaaagtgtgccgaagTTAGGT
AGTAAATCCTACCTGGGTCACGtaacattacaatagaatttcagcacttg
accaatgagaagcttcgcaggttttcgaaaacgatagcagcaatattttt
tgcgatattcacttttttgcatggaagagcttaaagcacgacatctaaaC
AGAAATCTGTGGTTCTCATGTCATGCATCTGATGTTCTTAAATGTTCTAT
ATCCTGTCTACAAAGTTCACAAGATTCttgttgaacacatttcaacttta
tCCAACCGTTAAAGCCGGTCTCCACtctcgcgcgacatgagcgaaaactt
tttgacgtttttgtaaggtcattggtcggttgaaaaatgaagcaattcca
ttggtcgaaattgacgtaactgatgaaaaaagtaaaacttccttcacttt
tttttgttcgcgcgaaacttttttatgacgtaatcttttcttcaggcaaa
aaaggtaaagaaaaaaactgtcgcccatttcgcgcgaaagtggagaccgc
cctttacgtcagatcgcatcaatggagttgcttcatttttcttttgacca
atagcgtggaagctttgttcgaaaaagtgcgatcgcagcgcgcacaagtg
gagaccggccttaaaatAGCGTAGTATATCTgcggcaatgaattttaaaa
ttttcagagatgcAACAGAGTAAAAATTgtgataaatttttcatttcagg
GGAGTTACGAAGAGTGTACAACGAGGACAAGGAGGAATTGATTAGTGTAC
TTAATTGGTATGAAATCTCATGTCAAATCGGCCGAAACTTCGGCGGAATC
CTACTATTGTGTGCCAGTCTCGTTTCCTTTTATATTGGACAATGGAAACT
TGATCGTTTGAATTTCAACAACCTGCTTCTTTCGATGGCTTGTTTCACAC
TATTCTTATTCTCAATATTCAAAGTGAAAAATGCTTCAAGACGTTTGGAT
GAGATTAGGTCCAAATACAGAGTCGTTGGAAAGAAAAGAGCAAGCTCAAC
CGAACAAAAACCTCTGATGGAATGGTACGATTTTGTTCAATTTGATATTG
TTCTGATGTTAGTTGCAACAAGCATTTTGCGTTACGTAACGATGGCAACC
ATCGCTTACACCACTCTCCTGACAACCACGGTATACGCATGGAAAGCTAA
TAATCTGTTTGCAATGTTCTTTGTCACCAATATAATAGCAATGGTTTCAC
TTACTCTACTTGCCAAATGGGACGTTGTGAAGGGTGCCAAAAGAGCCTTC
TATCTTTTCATACTGGCTTTAGTGGCTGGAGCAGTCCTTCTGATATCCTT
TATGTTGACCAAAGCTGGTCTCTTGGATACATTCACAAAACAATTGATCT
TTTTTGGAATGATGAAAATTGGTAAAAGTATTTGTTTGTATTTCACGAAC
ACATCTGGCAGTTTTCTGTTATTCAGTTTGGTATCCCCTGAAAACAGCAG
CTCCATAGCTGGGTTTAAGTCATTCTTCAACGTTTCCATGAAGTGTTTAT
CATATTTGACAGCCTTCAAGGCGGCTTATTTACCCGAGTACGCGTCACCA
CCTGTagccatatttatttttatttgtgcTTACATGTTGTTATATCGAAG
AGGAAATTTTCTTAAATGATGAAATTTGTTTATGATGTATATATATACAA
CGTCAAGCCTTTTATTTTAGATAGTTTTTTTATAGAAcaatgaaaagtaa
atattgaTTTTATTATTCTTATTCGTGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072138-exon-scaffold_71-1491911889:1072231..1072271 | TCONS_00072138-exon-scaffold_71-1491911889:1072231..1072271 | Clytia hemisphaerica | exon |
| TCONS_00072138-exon-scaffold_71-1510915933:1072231..1072271 | TCONS_00072138-exon-scaffold_71-1510915933:1072231..1072271 | Clytia hemisphaerica | exon |
| TCONS_00072138-exon-scaffold_71-1575043694:1072231..1072271 | TCONS_00072138-exon-scaffold_71-1575043694:1072231..1072271 | Clytia hemisphaerica | exon |
| TCONS_00072138-exon-scaffold_71-1491911889:1073830..1074858 | TCONS_00072138-exon-scaffold_71-1491911889:1073830..1074858 | Clytia hemisphaerica | exon |
| TCONS_00072138-exon-scaffold_71-1510915933:1073830..1074858 | TCONS_00072138-exon-scaffold_71-1510915933:1073830..1074858 | Clytia hemisphaerica | exon |
| TCONS_00072138-exon-scaffold_71-1575043694:1073830..1074858 | TCONS_00072138-exon-scaffold_71-1575043694:1073830..1074858 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_71 | supercontig | scaffold_71:1072231..1074858 + |
Blast
The following BLAST results are available for this feature:
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