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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072132 ID=TCONS_00072132|Name=TCONS_00072132|organism=Clytia hemisphaerica|type=transcript|length=2480bp
TTTCCACTTGCTGTGGGCAAAACTTCTACATTGGAAGATGGAAATAGAAA
AGCTTGAGAGTTTTGACGAAATGGAATAACCAAGAACAACAGCCACAAAC
ATCGCATCATGGAGAAACTTAAAATAGCTTGTGTATTTTTACATCTCATT
GTAACTTTAACTTTAGCATTAGAGCAAAATGGAGCAGTTTATAGAGAAGA
AATTACAAACGCTACAGTCATCAACAAAACAGAGTTTCATACAGACACAG
TCAACCATAAGCTTCATTGCCTTATAAGACCATATAGTTTTTGTTTCATT
GTGGAAGTTACTGAAACAGTGCCTGACAAAGAATACCAATGTCGTTTCTA
CGTCGGAAAATTTGTGAGTGTTGAAACAGCGCCTGGGCTAGCAACCATCT
ATGAATCATATGCTGCTTGCTCGACTCATCTATGTCAAGACCTACAGGGA
CCTACACATGATACAGACGGTGTTTATACTATACAGTTAGGTGGGAGCCC
GATCAAGGTTTGGTGTGACATGACTCAGAATGATGGTGGATGGACGACCA
TACAACGTCGCATTGATGGTTCGGTCGATTTCCAAAGATTGTGGCAAGAC
TATAAAGTTGGATTTGGAGAAGCTTCAGGGAATTATTGGTTAGGTAACGA
CCATCTTCATCATATCACTGACCACTACCAAAATGTTCTGGTTCGTATTA
AAGTCTTGGCACCTGATGGAGACAGAGCTGAAATCATCTCAGAGAATTTT
TTTGTTGCTGACGCAGCGAATTGGTACAGGGTTCGAACTGGGACATTCGT
TTCAGGACATAGTGGTTTGAAAAATGATTGGAACTACCATAATAATGTTG
GCTTCACTACAACAGACGTGGATAATGATAACAGCAATGAAAATTGTGCA
GAAAGGAATCGAGGTGGATTTTGGTATACTGGATGTGTCCGCTTTAATGC
TAATGGAATATATGGTCGCAATGATAACAAGGGAATTATCTCCAGATCTT
TCAAAGCCCTGGTGTCAATGAAGGAAGTCTCTATTGCCGTCAAAAGGAAA
GACTGAAAGGTGGACATCATTTGAAATGGATCATATTCAATTGGAATGAT
TATAATCGGGtttaaacaaattttattcACGAAATTTGGGACgaaatgga
gtttttacaagctcttatttgatttggttggtcgttaaccagtaataaaa
caattatcTTTGTCACTTTTTCTAAacaacgcgtcatttttattacttta
aacatgaccaattattaaagtatcttataaaaactccatcttatctaaga
aatttcgaaaagctcgtttttgtattattttgtAAAAGAGAAAAACTTTG
GATATTCACTGAAAATGTATCAGAGCTTGagaccacgttcacacgctacg
gttccgtttcgctccgaaacgaaacgaagCCAATCTTTTGGttaaattca
agttttacgtcacttctaaccaatagaatggcttcatttcgtttcggggC
GAAACGGTGCCgttacgtgcgaacatggtcacGTGGCTAGAAAATAAGCT
CCAGTTATGTGTTGTAGATAAACATTCCGCgataagaaaaaaaagaacag
cTATCCTTCTGAGGATATTCAAATGGAGAGGCGTGAGTTCCTTGGATGGC
ATTGAACGAATCAGCAGCACTGACTTTCAATTTTTAGAAGAGAAANTCAA
ATGGAGAGACGTGAGTTCCTTGGATGGTATTGAACGAATCAGCAGCACTG
ACTTTCAATTTTTAGAAGAGAAAgaataaatcttgaaaaaaaatgaatat
gctctgAAGTAATAACTCATACCTTGCCGCCTTTGATGCCGTGAGGTCCA
CGTTCACCAACGTCGCCCTGAAAATAATTCGAACCATAAACAGTTTTAAA
AAGTTGAGAGGTTAAGTATGAAGCGTGAGATATGATTTACACCTTAACCA
ATTCAGCCCTATCCTCGTGGTCCAAAGATTCAAAAAATTGTCCAACAATT
GTCTGAGCTCCTTGTAGAATTCTATGGCATGAGTTTTGTTAATTTTACGT
CATAAACTTTATGTCTTTTAGCCCGTAACTTGAAAACTAGCCGAGGAAAG
AATCATATCATCCCGTAAGGTTAGATTATCTTTATGCTTAATCGTATGAT
AAAATTGATATTGTATGTACATATAAAAACATATCTAAGGATCAATGATG
AAGGTCGTTCCAAAACGAAATGAAGCAGTTTTTTATATTGGTCAAAAATA
ACGTTATTCTCGACAGACCTATTAACCCTACGCTAACActtttatgaaaa
gaatttaGATCGGTGATGAAGCACTTAAATATATAGTCCACTGGGCGTTT
CGTTTGATTCTAGTAAACTATTACACATTCCCCTGTGGCGTTAAGGTTAA
TAGTTGTATTATTAgcctgaaaaacttttttgttttgttttggagaGATA
CGGAACCACATTTAATTTTATCATTGTATA Run BLAST on NCBI transcript from alignment at scaffold_71:853202..856698+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072132 ID=TCONS_00072132|Name=TCONS_00072132|organism=Clytia hemisphaerica|type=transcript|length=3497bp|location=Sequence derived from alignment at scaffold_71:853202..856698+ (Clytia hemisphaerica)
TTTCCACTTGCTGTGGGCAAAACTTCTACATTGGAAGATGGAAATAGAAA
AGCTTGAGAGTTTTGACGAAATGGAATAACCAAGAACAACAGCCACAAAC
ATCGCATCATGGAGAAACTTAAAATAGCTTGTGTATTTTTACATCTCATT
GTAACTTTAACTTTAGCATTAGAGCAAAATGGAGCAGTTTATAGAGAAGA
AATTACAAACGCTACAGTCATCAACAAAACAGAGTTTCATACAGACACAG
TCAACCATAAGCTTCATTGCCTTATAAGACCATATAGTTTTTGTTTCATT
GTGGAAGTTACTGAAACAGTGCCTGACAAAGAATACCAATGTCGTTTCTA
CGTCGGAAAATTTGTGAGTGTTGAAACAGCGCCTGGGCTAGCAACCATCT
ATGAATCATATGCTGCTTGCTCGACTCATCTATGTCAAGACCTACAGGGA
CCTACACATGATACAGACGGTGTTTATACTATACAGTTAGGTGGGAGCCC
GATCAAGGTTTGGTGTGACATGACTCAGAATGATGGTGGATGGACGACCA
TACAACGTCGCATTGATGGTTCGGTCGATTTCCAAAGATTGTGGCAAGAC
TATAAAGTTGGATTTGGAGAAGCTTCAGGGAATTATTGGTTAGGTAACGA
CCATCTTCATCATATCACTGACCACTACCAAAATGTTCTGGTTCGTATTA
AAGTCTTGGCACCTGATGGAGACAGAGCTGAAATCATCTCAGAGAATTTT
TTTGTTGCTGACGCAGCGAATTGGTACAGGGTTCGAACTGGGACATTCGT
TTCAGGACATAGTGGTTTGAAAAATGATTGGAACTACCATAATAATGTTG
GCTTCACTACAACGTAAGCTATTTCAAATTTCGTTCATAGTGGTAAAGGT
TTGCCGAAGTCGAACCGAAACTATCTAACCCAACGAAGTTAGGAGGGGAT
GCCATAAATATTTCACATAAATATTCCCACTTCTTAAAAACAGATATAAT
TTTCCCTTAAAATCGCTAGTTTAGGATCGATAGATGTATAGTTtcgcaag
ctagacgactaaatTTAATAGAGAAGGTAAAATGATGGTAAGGAAAACCT
AGAGGACAATATTATACAAACTAACATTATCACATATTAGTTATCGCATT
ATCATAAAACATCTaaatattcaataggtaaaataTAATTATATGAATAT
ACATCACCGAAGGCTAATAAATCCAATAGCCAACGAAATCCTAATgaata
tgttttattatatgccCAGAGacgaaaacaaaacataaatgCTCTATTTT
GTAGAGAGATTCACATAAAACGCTCACACAAAGCgaacattcgaattttt
ttccttctaaTTGTTTTTTAATGACTTATGTTCACGAAACTTACAATTGA
ACTATTATGACTTTCtttaacaacaacaaaataaaagtaacaaaaagtca
attttcgaaTGCAAAATTATATATGCCCTTTAATTATTCTTCTCAATTTT
CAACAGAAGTAGCCTGAAATGTGATCTTTGTTtgaacgaaaaatttgaaa
tctcttTGCGTATAGACAATTTACTGAACTCTAGATCTGAACTTATCTCA
AAATACCGGCACATAAACAAACACTTGCTCGAAAACTTCGATTCTAATGA
TTGACGTTAATTTTAATACATATATAGgtttcgttggttattggattcaT
TAACCTTCGATGATCCTGAAATTGTACTCTCGGCTTCCCCTCGGTTTTAC
CTATTGATATCTGCTTATTATCCTTAACTTCAGTTTAAAAGTATATTATT
TCCGGcttttggaaaaattcaaaattgacctTGCCTTTACAGCAAATTTG
ATTGAGCTGACCTTAAATTCTTAATTTCAGAGACGTGGATAATGATAACA
GCAATGAAAATTGTGCAGAAAGGAATCGAGGTGGATTTTGGTATACTGGA
TGTGTCCGCTTTAATGCTAATGGAATATATGGTCGCAATGATAACAAGGG
AATTATCTCCAGATCTTTCAAAGCCCTGGTGTCAATGAAGGAAGTCTCTA
TTGCCGTCAAAAGGAAAGACTGAAAGGTGGACATCATTTGAAATGGATCA
TATTCAATTGGAATGATTATAATCGGGtttaaacaaattttattcACGAA
ATTTGGGACgaaatggagtttttacaagctcttatttgatttggttggtc
gttaaccagtaataaaacaattatcTTTGTCACTTTTTCTAAacaacgcg
tcatttttattactttaaacatgaccaattattaaagtatcttataaaaa
ctccatcttatctaagaaatttcgaaaagctcgtttttgtattattttgt
AAAAGAGAAAAACTTTGGATATTCACTGAAAATGTATCAGAGCTTGagac
cacgttcacacgctacggttccgtttcgctccgaaacgaaacgaagCCAA
TCTTTTGGttaaattcaagttttacgtcacttctaaccaatagaatggct
tcatttcgtttcggggCGAAACGGTGCCgttacgtgcgaacatggtcacG
TGGCTAGAAAATAAGCTCCAGTTATGTGTTGTAGATAAACATTCCGCgat
aagaaaaaaaagaacagcTATCCTTCTGAGGATATTCAAATGGAGAGGCG
TGAGTTCCTTGGATGGCATTGAACGAATCAGCAGCACTGACTTTCAATTT
TTAGAAGAGAAANTCAAATGGAGAGACGTGAGTTCCTTGGATGGTATTGA
ACGAATCAGCAGCACTGACTTTCAATTTTTAGAAGAGAAAgaataaatct
tgaaaaaaaatgaatatgctctgAAGTAATAACTCATACCTTGCCGCCTT
TGATGCCGTGAGGTCCACGTTCACCAACGTCGCCCTGAAAATAATTCGAA
CCATAAACAGTTTTAAAAAGTTGAGAGGTTAAGTATGAAGCGTGAGATAT
GATTTACACCTTAACCAATTCAGCCCTATCCTCGTGGTCCAAAGATTCAA
AAAATTGTCCAACAATTGTCTGAGCTCCTTGTAGAATTCTATGGCATGAG
TTTTGTTAATTTTACGTCATAAACTTTATGTCTTTTAGCCCGTAACTTGA
AAACTAGCCGAGGAAAGAATCATATCATCCCGTAAGGTTAGATTATCTTT
ATGCTTAATCGTATGATAAAATTGATATTGTATGTACATATAAAAACATA
TCTAAGGATCAATGATGAAGGTCGTTCCAAAACGAAATGAAGCAGTTTTT
TATATTGGTCAAAAATAACGTTATTCTCGACAGACCTATTAACCCTACGC
TAACActtttatgaaaagaatttaGATCGGTGATGAAGCACTTAAATATA
TAGTCCACTGGGCGTTTCGTTTGATTCTAGTAAACTATTACACATTCCCC
TGTGGCGTTAAGGTTAATAGTTGTATTATTAgcctgaaaaacttttttgt
tttgttttggagaGATACGGAACCACATTTAATTTTATCATTGTATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072132-exon-scaffold_71-1491911889:853202..854064 | TCONS_00072132-exon-scaffold_71-1491911889:853202..854064 | Clytia hemisphaerica | exon |
| TCONS_00072132-exon-scaffold_71-1510915933:853202..854064 | TCONS_00072132-exon-scaffold_71-1510915933:853202..854064 | Clytia hemisphaerica | exon |
| TCONS_00072132-exon-scaffold_71-1575043694:853202..854064 | TCONS_00072132-exon-scaffold_71-1575043694:853202..854064 | Clytia hemisphaerica | exon |
| TCONS_00072132-exon-scaffold_71-1491911889:855082..856698 | TCONS_00072132-exon-scaffold_71-1491911889:855082..856698 | Clytia hemisphaerica | exon |
| TCONS_00072132-exon-scaffold_71-1510915933:855082..856698 | TCONS_00072132-exon-scaffold_71-1510915933:855082..856698 | Clytia hemisphaerica | exon |
| TCONS_00072132-exon-scaffold_71-1575043694:855082..856698 | TCONS_00072132-exon-scaffold_71-1575043694:855082..856698 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_71 | supercontig | scaffold_71:853202..856698 + |
Blast
BLAST of TCONS_00072132 vs. Swiss-Prot (Human)
Match: FCN1 (Ficolin-1 OS=Homo sapiens GN=FCN1 PE=1 SV=2) HSP 1 Score: 136.346 bits (342), Expect = 1.537e-34 Identity = 77/178 (43.26%), Postives = 104/178 (58.43%), Query Frame = 1
Query: 433 CQDLQGPTHDTDGVYTIQLGG-SPIKVWCDMTQNDGGWTTIQRRIDGSVDFQRLWQDYKVGFGEASGNYWLGNDHLHHITDHYQNVLVRIKVLAPDGDRAEIISENFFVADAANWYRVRTGTFVSGHSGLKNDWNYHNNVGFTTTDVDNDNSNENCAERNRGGFWYTGCVRFNANGIY 963
C+DL + G +TI L P+ V CDM + GGWT QRR+DGSVDF R W YK GFG G +WLGND++H +T + L R+ ++ +G+ ++F VAD A Y++ G FV G +G N HNN F+T D DND S+ NCAE+ +G +WY C N NG+Y
Sbjct: 118 CKDLLDRGYFLSGWHTIYLPDCRPLTVLCDMDTDGGGWTVFQRRMDGSVDFYRDWAAYKQGFGSQLGEFWLGNDNIHALTAQGSSEL-RVDLVDFEGNHQFAKYKSFKVADEAEKYKLVLGAFVGGSAG--NSLTGHNNNFFSTKDQDNDVSSSNCAEKFQGAWWYADCHASNLNGLY 292
The following BLAST results are available for this feature:
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