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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072106 ID=TCONS_00072106|Name=TCONS_00072106|organism=Clytia hemisphaerica|type=transcript|length=2008bpRun BLAST on NCBI protein sequence of TCONS_00072106-protein >TCONS_00072106-protein ID=TCONS_00072106-protein|Name=TCONS_00072106-protein|organism=Clytia hemisphaerica|type=polypeptide|length=598bp HFVEAIKKETRHTANIITGIMIRSLSDSFMVPKNPRIFDQGAYKKKSVSFRun BLAST on NCBI transcript from alignment at scaffold_71:171600..190859+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00072106 ID=TCONS_00072106|Name=TCONS_00072106|organism=Clytia hemisphaerica|type=transcript|length=19260bp|location=Sequence derived from alignment at scaffold_71:171600..190859+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_71:171600..190859+ >TCONS_00072106 ID=TCONS_00072106|Name=TCONS_00072106|organism=Clytia hemisphaerica|type=CDS|length=28752bp|location=Sequence derived from alignment at scaffold_71:171600..190859+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00072106 vs. Swiss-Prot (Human)
Match: S18B1 (MFS-type transporter SLC18B1 OS=Homo sapiens GN=SLC18B1 PE=1 SV=1) HSP 1 Score: 164.851 bits (416), Expect = 5.810e-44 Identity = 134/448 (29.91%), Postives = 239/448 (53.35%), Query Frame = 1
Query: 175 RHPTTDKAQQSKEIIIDHDVEEPLIRNRQELLILIGMAYLYLNANVGFAIIAPFLPIESKKKNIGTLVQGLIFAIYPFVIFIVSPLLGKWMPKLGVKFSMIGGSFVQGCSLVILGSLDYIEDDQLFLIYCFILRVVMAVGAAGCETGCLSIVSISFKHRMSTAQXXXXXXXXXXXXXXPVIGGVLYKFGGFKLPLMSIGVLICSAAFLTFFVLPEEATFRVHRHDDQTVSFLKVITIPGIFIMGTVSLTAGMVISFLDPTLTNYVEVLTDNSVSSALVGLIFLCIPVTYTVFTPILGYLIDKKISGR-YACIIGAYLGGICFLFIGPCPLFFPWIEPNXXXXXXXXXXXXXFSITSLFVPVLNEMQLIARKANLPLGMGTDSILSGIYTANFNLGSMVGPTLGGALTDNLQFPWXXXXXXXXXXXXXXXXXXXTVLENICSRKKKIKQ 1515
R P D S E P +R+++ +LI A + L + + ++I+ PF P E++KK + G+IF + + S + G ++ +G KF + G FV G ++ G LD + D +F+ CF++RV+ AV A T SI++ +F + ++T G + SG+GL+LGP +GG LY+ G+++P + +G ++ L ++LP + D SF K+I +P + ++ V + FLDPTL+ + VL ++ + VGL+FL + ++Y + +P+ G L DK+ R + + G + C++ +GP P+ I+ LWLL+ +L+ G + S+ +P E+ A + G+ T ++SG+++A +++G+ +GPTLGG L + + F WA+A G L + +F +LE SR+K+ K
Sbjct: 11 RAPGGDDPAGSAG-------ETPGWLSREQVFVLISAASVNLGSMMCYSILGPFFPKEAEKKGASNTIIGMIFGCFALFELLASLVFGNYLVHIGAKFMFVAGMFVSGGVTILFGVLDRVPDGPVFIAMCFLVRVMDAVSFAAAMTASSSILAKAFPNNVATVLGSLETFSGLGLILGPPVGGFLYQSFGYEVPFIVLGCVVLLMVPLNMYILPN------YESDPGEHSFWKLIALPKVGLIAFVINSLSSCFGFLDPTLSLF--VLEKFNLPAGYVGLVFLGMALSYAISSPLFGLLSDKRPPLRKWLLVFGNLITAGCYMLLGPVPILH--IKSQLWLLVLILVVSGLSAGMSI-IPTFPEILSCAHENGFEEGLSTLGLVSGLFSAMWSIGAFMGPTLGGFLYEKIGFEWAAAIQGLWALISGLAMGLFYLLEY--SRRKRSKS 438 The following BLAST results are available for this feature:
BLAST of TCONS_00072106 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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