TCONS_00072106-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00072106-protein
Unique Name	TCONS_00072106-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	598

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00072106-protein ID=TCONS_00072106-protein|Name=TCONS_00072106-protein|organism=Clytia hemisphaerica|type=polypeptide|length=598bp
HFVEAIKKETRHTANIITGIMIRSLSDSFMVPKNPRIFDQGAYKKKSVSF
SPATYYESRHPTTDKAQQSKEIIIDHDVEEPLIRNRQELLILIGMAYLYL
NANVGFAIIAPFLPIESKKKNIGTLVQGLIFAIYPFVIFIVSPLLGKWMP
KLGVKFSMIGGSFVQGCSLVILGSLDYIEDDQLFLIYCFILRVVMAVGAA
GCETGCLSIVSISFKHRMSTAQGVMSGSSGVGLMLGPVIGGVLYKFGGFK
LPLMSIGVLICSAAFLTFFVLPEEATFRVHRHDDQTVSFLKVITIPGIFI
MGTVSLTAGMVISFLDPTLTNYVEVLTDNSVSSALVGLIFLCIPVTYTVF
TPILGYLIDKKISGRYACIIGAYLGGICFLFIGPCPLFFPWIEPNLWLLI
GVLLALGAFSITSLFVPVLNEMQLIARKANLPLGMGTDSILSGIYTANFN
LGSMVGPTLGGALTDNLQFPWASAAFGALLLFEATLLLIFTVLENICSRK
KKIKQPIYNGMGRGRPRLSSTNIVPYHQICDPRIDSTAALPTIESSGEEY
ITRVGDRVSVRAYQQPRYDRFLPSPKEEDEHFMEKSCEIIEENSSKQK

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_044783	XLOC_044783	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00072106	TCONS_00072106	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001958	Tet-R_TetA/multi-R_MdtG
IPR011701	MFS
IPR020846	MFS_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005215	transporter activity

Vocabulary: **Biological Process**
Term	Definition
GO:0055085	transmembrane transport

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005215	transporter activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001958	Tetracycline resistance protein TetA/multidrug resistance protein MdtG	PRINTS	PR01035	TCRTETA	coord: 441..464 score: 32.92 coord: 127..146 score: 34.5 coord: 251..271 score: 20.95
IPR011701	Major facilitator superfamily	PFAM	PF07690	MFS_1	coord: 104..426 e-value: 2.7E-24 score: 85.7
None	No IPR available	GENE3D	1.20.1250.20		coord: 286..508 e-value: 2.4E-17 score: 62.4
None	No IPR available	GENE3D	1.20.1250.20		coord: 81..285 e-value: 2.5E-24 score: 85.2
IPR020846	Major facilitator superfamily domain	PROSITE	PS50850	MFS	coord: 89..502 score: 15.014
IPR020846	Major facilitator superfamily domain	CDD	cd06174	MFS	coord: 92..478 e-value: 1.39358E-30 score: 120.882
IPR020846	Major facilitator superfamily domain	SUPERFAMILY	103473	MFS general substrate transporter	coord: 90..491

Blast

[Close]

BLAST of TCONS_00072106-protein vs. Swiss-Prot (Human)
Match: S18B1 (MFS-type transporter SLC18B1 OS=Homo sapiens GN=SLC18B1 PE=1 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 1.587e-54
Identity = 134/448 (29.91%), Postives = 239/448 (53.35%), Query Frame = 0

Query:   59 RHPTTDKAQQSKEIIIDHDVEEPLIRNRQELLILIGMAYLYLNANVGFAIIAPFLPIESKKKNIGTLVQGLIFAIYPFVIFIVSPLLGKWMPKLGVKFSMIGGSFVQGCSLVILGSLDYIEDDQLFLIYCFILRVVMAVGAAGCETGCLSIVSISFKHRMSTAQGVMSGSSGVGLMLGPVIGGVLYKFGGFKLPLMSIGVLICSAAFLTFFVLPEEATFRVHRHDDQTVSFLKVITIPGIFIMGTVSLTAGMVISFLDPTLTNYVEVLTDNSVSSALVGLIFLCIPVTYTVFTPILGYLIDKKISGR-YACIIGAYLGGICFLFIGPCPLFFPWIEPNLWLLIGVLLALGAFSITSLFVPVLNEMQLIARKANLPLGMGTDSILSGIYTANFNLGSMVGPTLGGALTDNLQFPWASAAFGALLLFEATLLLIFTVLENICSRKKKIKQ 505
            R P  D    S         E P   +R+++ +LI  A + L + + ++I+ PF P E++KK     + G+IF  +     + S + G ++  +G KF  + G FV G   ++ G LD + D  +F+  CF++RV+ AV  A   T   SI++ +F + ++T  G +   SG+GL+LGP +GG LY+  G+++P + +G ++     L  ++LP       +  D    SF K+I +P + ++  V  +      FLDPTL+ +  VL   ++ +  VGL+FL + ++Y + +P+ G L DK+   R +  + G  +   C++ +GP P+    I+  LWLL+ +L+  G  +  S+ +P   E+   A +     G+ T  ++SG+++A +++G+ +GPTLGG L + + F WA+A  G   L     + +F +LE   SR+K+ K 
Sbjct:   11 RAPGGDDPAGSAG-------ETPGWLSREQVFVLISAASVNLGSMMCYSILGPFFPKEAEKKGASNTIIGMIFGCFALFELLASLVFGNYLVHIGAKFMFVAGMFVSGGVTILFGVLDRVPDGPVFIAMCFLVRVMDAVSFAAAMTASSSILAKAFPNNVATVLGSLETFSGLGLILGPPVGGFLYQSFGYEVPFIVLGCVVLLMVPLNMYILPN------YESDPGEHSFWKLIALPKVGLIAFVINSLSSCFGFLDPTLSLF--VLEKFNLPAGYVGLVFLGMALSYAISSPLFGLLSDKRPPLRKWLLVFGNLITAGCYMLLGPVPILH--IKSQLWLLVLILVVSGLSAGMSI-IPTFPEILSCAHENGFEEGLSTLGLVSGLFSAMWSIGAFMGPTLGGFLYEKIGFEWAAAIQGLWALISGLAMGLFYLLEY--SRRKRSKS 438

The following BLAST results are available for this feature:

BLAST of TCONS_00072106-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00072106-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
S18B1	1.587e-54	29.91	MFS-type transporter SLC18B1 OS=Homo sapiens GN=SL...	[more]

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TCONS_00072106-protein (polypeptide) - C. hemisphaerica