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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072065 ID=TCONS_00072065|Name=TCONS_00072065|organism=Clytia hemisphaerica|type=transcript|length=409bp
GGTTTTTTTAGCTGGTGAAAAACGTTGGCATTAATCTATTACTATTCAAC
CAGAAAGTGATCTTTTGGTAAAACTTTCACTCAAGTATTTGATATTCTAA
AAAATGGAAGGCAAGACATTAATTTTGGTCATAAGTATCCAGTGTTTTGT
ACACGTTATATCAATGGTAAATACAATGAAATGTCAATCGAAGAAGCCGT
TGAATAACCACGGTGTAAGCCCTATCACATTCATCGATAAagAAAGGAAT
CCTTCTGCTGGCACTTTATTGGCTGTGATCCCAAGAATGTCTACAGAGTG
GAGTGTTGAATTTGATATCAAGCTAACAAAAGATGAACATTATTCAGTAC
ACAGTCTCATTCATTTCACGGCCACCGGTAATGAGTTTGGAGCTGTTGGT
GATAGGTGA Run BLAST on NCBI protein sequence of TCONS_00072065-protein >TCONS_00072065-protein ID=TCONS_00072065-protein|Name=TCONS_00072065-protein|organism=Clytia hemisphaerica|type=polypeptide|length=101bp
MEGKTLILVISIQCFVHVISMVNTMKCQSKKPLNNHGVSPITFIDKERNP
SAGTLLAVIPRMSTEWSVEFDIKLTKDEHYSVHSLIHFTATGNEFGAVGD
R Run BLAST on NCBI transcript from alignment at scaffold_70:174028..175484+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072065 ID=TCONS_00072065|Name=TCONS_00072065|organism=Clytia hemisphaerica|type=transcript|length=1457bp|location=Sequence derived from alignment at scaffold_70:174028..175484+ (Clytia hemisphaerica)
GGTTTTTTTAGCTGGTGAAAAACGTTGGCATTAATCTATTACTATTCAAC
CAGAAAGTGATCTTTTGGTAAAACTTTCACTCAAGTATTTGATATTCTAA
AAAATGGAAGGCAAGACATTAATTTTGGTCATAAGTATCCAGTGTTTTGT
ACACGTTATATCAATGGTAAATACAATGAAATGTGTAAGTGTATTTTCAA
TGTCTCAATCTTTTCGGACTAATTAATGACTTATAATAAAAAGGGCTAAA
ATGTGCCagaattttagatttatttacagaaaaaaaattttttatccagT
TTGAAAAGCATCCAATTTGCTACACTTGAGATTTAAACATTGGTTTTTCG
ATGTTGaaatttttgacgaaaaacattgatttttggTCTTCTTGTTTTAG
CAATCGAAGAAGCCGTTGAATAACCACGGTGTAAGCCCTATCACATTCAT
CGATAAaggtaaaaaatattgaaaactttCTACTGTAGAATTCTTTTGGt
gtatacacatttttttataagaacatccacaatttttaaagcctccagat
gctcttaatttttttaagtttaagcCAAAGAATGTTCTCaacctgttctt
attttcaccattttgtgagtatttttgtgcaatttcaaGAAgtagggtgt
tttagagtccacaaagtcctaaaatgtttttaaacgtGCTTTTATTATTT
TGGCTATTGAAGCATTATGTTCTCCTATGAGGACCCAGCGGACCTTTTTT
ACCCAAATTCACTTATTCGCgcaatgttttttcgcaattcacgcaatttt
tgttcatgcaaagctttccaattcacgcattcacgcaattttattttatt
ttcaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNTTTAGgcccgctgggggggggggctcatatagtttgttcttt
aaaaaatgtgtattctCAAAACTGGGAAAGATATTCTTGTATGAATCTTG
ATCaatttgcgaattttctttttaGCTAATCGAACACACTTGTTTCATTG
ACCCACTTGATATAATTCACAAAGAGGAGACTGCGAACATAGAATAATGC
GCTCCTCCCTGCCTAGGGAATAGAAAACCTATTTCCTCAGAGAGACCGGC
TTTTCGGTTAATAATCCATAATCAATTCTTTCAATTGTTTGACATTCAAA
TTCTAGAATTCACTGCTCAAAAAATCCAATTCTCATTTAGAAAGGAATCC
TTCTGCTGGCACTTTATTGGCTGTGATCCCAAGAATGTCTACAGAGTGGA
GTGTTGAATTTGATATCAAGCTAACAAAAGATGAACATTATTCAGTACAC
AGTCTCATTCATTTCACGGCCACCGGTAATGAGTTTGGAGCTGTTGGTGA
TAGGTGA Coding sequence (CDS) from alignment at scaffold_70:174028..175484+ >TCONS_00072065 ID=TCONS_00072065|Name=TCONS_00072065|organism=Clytia hemisphaerica|type=CDS|length=918bp|location=Sequence derived from alignment at scaffold_70:174028..175484+ (Clytia hemisphaerica)
ATGGAAGGCAAGACATTAATTTTGGTCATAAGTATCCAGTGTTTTGTACA
CGTTATATCAATGGTAAATACAATGAAATGTCAATCGAAGAAGCCGTTGA
ATAACCACGGTGTAAGCCCTATCACATTCATCGATAAagAAAGGAATCCT
TCTGCTGGCACTTTATTGGCTGTGATCCCAAGAATGTCTACAGAGTGGAG
TGTTGAATTTGATATCAAGCTAACAAAAGATGAACATTATTCAGTACACA
GTCTCATTCATTTCACGGCCACCGGTAATGAGTTTGGAGCTGTTGGTGAT
AGGTGAATGGAAGGCAAGACATTAATTTTGGTCATAAGTATCCAGTGTTT
TGTACACGTTATATCAATGGTAAATACAATGAAATGTCAATCGAAGAAGC
CGTTGAATAACCACGGTGTAAGCCCTATCACATTCATCGATAAagAAAGG
AATCCTTCTGCTGGCACTTTATTGGCTGTGATCCCAAGAATGTCTACAGA
GTGGAGTGTTGAATTTGATATCAAGCTAACAAAAGATGAACATTATTCAG
TACACAGTCTCATTCATTTCACGGCCACCGGTAATGAGTTTGGAGCTGTT
GGTGATAGGTGAATGGAAGGCAAGACATTAATTTTGGTCATAAGTATCCA
GTGTTTTGTACACGTTATATCAATGGTAAATACAATGAAATGTCAATCGA
AGAAGCCGTTGAATAACCACGGTGTAAGCCCTATCACATTCATCGATAAa
gAAAGGAATCCTTCTGCTGGCACTTTATTGGCTGTGATCCCAAGAATGTC
TACAGAGTGGAGTGTTGAATTTGATATCAAGCTAACAAAAGATGAACATT
ATTCAGTACACAGTCTCATTCATTTCACGGCCACCGGTAATGAGTTTGGA
GCTGTTGGTGATAGGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072065-exon-scaffold_70-1491911889:174028..174211 | TCONS_00072065-exon-scaffold_70-1491911889:174028..174211 | Clytia hemisphaerica | exon |
| TCONS_00072065-exon-scaffold_70-1510915933:174028..174211 | TCONS_00072065-exon-scaffold_70-1510915933:174028..174211 | Clytia hemisphaerica | exon |
| TCONS_00072065-exon-scaffold_70-1575043694:174028..174211 | TCONS_00072065-exon-scaffold_70-1575043694:174028..174211 | Clytia hemisphaerica | exon |
| TCONS_00072065-exon-scaffold_70-1491911889:174428..174485 | TCONS_00072065-exon-scaffold_70-1491911889:174428..174485 | Clytia hemisphaerica | exon |
| TCONS_00072065-exon-scaffold_70-1510915933:174428..174485 | TCONS_00072065-exon-scaffold_70-1510915933:174428..174485 | Clytia hemisphaerica | exon |
| TCONS_00072065-exon-scaffold_70-1575043694:174428..174485 | TCONS_00072065-exon-scaffold_70-1575043694:174428..174485 | Clytia hemisphaerica | exon |
| TCONS_00072065-exon-scaffold_70-1491911889:175318..175484 | TCONS_00072065-exon-scaffold_70-1491911889:175318..175484 | Clytia hemisphaerica | exon |
| TCONS_00072065-exon-scaffold_70-1510915933:175318..175484 | TCONS_00072065-exon-scaffold_70-1510915933:175318..175484 | Clytia hemisphaerica | exon |
| TCONS_00072065-exon-scaffold_70-1575043694:175318..175484 | TCONS_00072065-exon-scaffold_70-1575043694:175318..175484 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_70 | supercontig | scaffold_70:174028..175484 + |
Blast
The following BLAST results are available for this feature:
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