TCONS_00072056 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072056
Unique NameTCONS_00072056
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3670

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072056 ID=TCONS_00072056|Name=TCONS_00072056|organism=Clytia hemisphaerica|type=transcript|length=3670bp
TGCGTCGCTACATAAGCAGAAAATGGGTAGCGCTAAAAGCAGCAAACACG
ATCTTCGAATTACCGCAGCTTAGGCTACCATattttcgaagatttttaat
ttttctgtgACCCATCCATGACCAGCAGACCAGTTAGTATCCATTTATGT
gTAAAAGATGGCAGATGATGGGTCAAAAATCTTAAGATTCACATCTGATA
CTGCCAGTCCCAAGCATCAAGAACCCTCTGGTAAGAAGTACCAAGCTACC
GCAAAATATGACCGTAAAGCATTAAAGAAAAGACTGGTAGTTGAAGAGTG
GCTTCATTATGAATTACGAAGATTGTATCAGTGCAAGGAGGGAGAAGAGT
ATGGTGTGGAGATTGATCTTGATATTTTACTCCAAGAAAAAGATGGTGAA
AAGCAACAGGAAATGTTACAGaatttacttTCAGGATCAAAAGAGCCTGT
AGAAGAATTTATTCAAAATCTTTTGGAGAAGATAAAAAGCATagaTGAAA
ATGTCCTCCACAGAGCCTCAAGCAAAGAAACATTAattaactgaaaaaag
aaaatatagcaattataaatataaaacaTAAAGAATTGGAGCTTTGGGAC
TCTAAATTTTTATCTCATAAATTACATGTCATCTAGAAAGTAACATACTT
TCATCATGCATGGTTTGAACATGATATACACATTTTCTACACAATATGAA
GGTTTTTAAACGACTAGCAGGCATTTAAAAGATGTTTttagtttgttatt
tttatcttttgtatAATTTATCGGTATTATATTCGTTTATCTTTACACTT
CGTATGTTGTTTCATTGACCCAAAGTATATTACAAATCAAACTGGCAATA
TACAATATTCTATGAAactgaaaatttacaaaaacgaCAATTAGTAATTC
CATGTTACCTAAGATAGCATACTTTAATCTGATTGATTTTCATGAGATTT
GATTGAGagccaaatttttttgatttattttcgtGAATCggcactttgaa
aatttttgagagGGTTTTCAGGGAATCAACTCAGGGTTTTATTTCAGGAT
TTTATTTCAGGAGTTGGCAATCTCACGCAGTTCTGTGAGTTTCATTTTCA
CGAAAAACGGCAAAAATTGGTTAAACGCTAAATCAAATCTCCTGAAAAGT
TTTCTGATTAAAGTAATTTTTAGTTGAACTCTTCATGCATTGAtattatt
taacattttttggattagtttcaattttttaaattttctcagaGAATTTA
TACATCATAGATTTTTATTTGTTCCAATTTTAAGTACAGCAATTTAttca
tattatttaaaataaaacagTAAAGTAATATATTGAATCTAATTTTAATT
GCACCTGAACTGAATACTTTACAAAACCGAACTTGACATAAATCTAAGGT
TGgttaaaatcctttaaaattttgttgcaCGCTTATTTTTAGTACGAAAT
CTTAAACTAAAAGACCTCATTAAATTCTATAAATTCTAACGTTTTAGTAA
TATTTTAGAAagtgtaatttttcaaatatttactagtttttgaaaaatat
attctgTAATGAGTTTACAGTTGTCGTTCATCAGCGTTCATATTTTTTCT
GTTCAATTTGAATTAACATGTCTAAATGAAATGAGCTTCTAGAATGGTAT
CTAATCCAAATAGACCATTTTCCTgtaaatttgcaagatttgttgagatt
ttttgaaaaatcatttttttgttcttttgtattTTATGTTTTACAGATTC
TAcatattaaaatgaaaaaataagattGTCAGATGGTGAAATGATGCGTA
ATAATGGATCCTTTTCTAGCAAGAGCAAAATATAAGTATGATGGTGAACA
GGCAGATTACACTTTGAAGTTCGATGCATACAATATCATTACTATTTctg
ctgaaaaagaaaatctttggcTTGGTACGCTAAATGGAAAGAAAGGATGG
TTGGACCAACATAGTGTTGAGATTTCGCATCGAAGGGAAAGCATTATTTG
ATTACCATTCTAATGATGGACAGGAATTATCTTTCAAGGAAGGTGATACT
ATTGGAAGAATAGTCTACATAGATAATCATGATTGGTTACGTGGTCAAGT
TGGTGATAGAGTTGGTTTATTTCCACGTAATTTTGTGGATCTTGTTTTGA
AACCTGTAAGAAAAGCAACTATCACAGATGACTATACTGCACTGGAAGCT
GATGAGCTCAGTTTAGTATCTGGCCATATTATAGATATTGTTGAAGATTT
TGGTAATGGCTGGTTAGCTGCTATCGATGGTAATAAACACGGTTTGTGCC
CAGTTTCATTTATAAACTTTACTGAAGATGAAAAGAAGTCTGTTGCATCT
GCGTCAACTATAAATGAATTGTCAGTGGCTGAAGATACAAAACTGACTGA
ACAGCTGACATGCAGTATTTGTTTGGAGTATGCTGAGCAAGCTGTCGAAA
CCAGTTGTTGTCATCATATTTTCTGTGAACCTTGtcttcaaaaagtgaaa
aacaaagTATGCCCTCAGTGCAGGAAGAATTTCACAATGGTTGTTGCCTA
TTTAGCGCGTCGTATGATAGGGGAGATGGAAACTAGTTGTACAAATGATT
CTTGTGGTATCAAAACAACACGGTCAGAACTTGTTCACCATCTATTGAAT
TGTCCATTCAGGAAATTTTGTTGTAAGTTATGTGTTTATGTGGGCTTAAA
GAAGGATCTTGGTTTACACTTGATTAATGACCACTTGGATGAGACACTTG
ATAATTGTAAACCTCTTTTTAACTAATTCACTTTTTTTGTCTTTTACATT
GTCTTGTTTGGTAAAATGTGAACGGGTCTACTGAAATCCCTATATGACTT
GACTATTTTAAAAATTTAGTGTTTCATGCTTGACTACTTGTCACCAAATT
CTCGTCTTCTGTAAAATAAGCGCTTTTAGAAGGAGTTACCACAGTGCTAA
TCTAAATTTCAAACCACTTTCCCTTGAGATAGACCTTTTCATAAATTACG
TCACAAACATCATTTGCCTCGTATTCAAACAATTTTCATGGTGGTCACAT
CCTTTGAGACATTAAATGATTTTTTTATGAATAGAAAGTTGTTTTGATAA
AATCCGCTGGGAGTTAATTACCATGCCAATAATTTCAAAACGAGGCAAGT
GATGTTTGTGACGTAATTTATGGAAAGGTCTATTGTTTTGAGTTTTTTTG
GTTTTCAGGACCCTTGGGGTATTTTTTATTTTTATTGCATTTTTTTTATT
TAAAGTTTAAAATGATACAGAAGATTGATTCAGTTTCACTGCAAAAATTT
CCAAGGGAATTGTAAAGGGAGGATGCTATCCCATTCAAAACTTTGGGTAA
TTTAGTACTTTTAAGCTAGATTTTTTTTCTGAAAATAAAGTATGAGATGT
TCCATTTTGAGCTGCTAATCTTAATTGACTTTATTTGGATTATATTTTAT
ACTCATTTAAAATTTTCTTTTTTTAAGATTTTGGTTTTTGTACTTTTATT
TTTACTAAGAGAATTGACTTCTTGTTTTTTTTATCTATTATAGTTGGATT
GCTTTTAATCATTTCAAAGAGCGATTCACTTTTATTTTGTTTTGTAGAAT
AAATATTTTTTTATAAGATGTAAGATAATTATTATATATTTTCATTTTCA
TTTTCGAATAGAAACAAATT
Run BLAST on NCBI

protein sequence of TCONS_00072056-protein

>TCONS_00072056-protein ID=TCONS_00072056-protein|Name=TCONS_00072056-protein|organism=Clytia hemisphaerica|type=polypeptide|length=280bp
MERKDGWTNIVLRFRIEGKALFDYHSNDGQELSFKEGDTIGRIVYIDNHD
WLRGQVGDRVGLFPRNFVDLVLKPVRKATITDDYTALEADELSLVSGHII
DIVEDFGNGWLAAIDGNKHGLCPVSFINFTEDEKKSVASASTINELSVAE
DTKLTEQLTCSICLEYAEQAVETSCCHHIFCEPCLQKVKNKVCPQCRKNF
TMVVAYLARRMIGEMETSCTNDSCGIKTTRSELVHHLLNCPFRKFCCKLC
VYVGLKKDLGLHLINDHLDETLDNCKPLFN
Run BLAST on NCBI

transcript from alignment at scaffold_70:19025..30538+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072056 ID=TCONS_00072056|Name=TCONS_00072056|organism=Clytia hemisphaerica|type=transcript|length=11514bp|location=Sequence derived from alignment at scaffold_70:19025..30538+ (Clytia hemisphaerica)
TGCGTCGCTACATAAGCAGAAAATGGGTAGCGCTAAAAGCAGCAAACACG
ATCTTCGAATTACCGCAGCTTAGGCTACCATattttcgaagatttttaat
ttttctgtgACCCATCCATGACCAGCAGACCAGTTAGTATCCATTTATGT
ggtatttattttaatttctatGTTTTAATATGTTACAGGTGTTAggtgtt
ttattttttgtttccatGATGCATGAAGGTCTAcctccagacggtgtcaa
tcgaacgaatcgaacgccgaatcaatcgaacgtaattgacgaacgcaatc
gaataattgcaattcgattgtcgaacgcaatcgaatcgcaatcgaatatt
acccaggatttactgttcaattgcttcgattacgttcgattgtattcgat
tacgttcgattgattcaattgtgtattagattttattcgctttggtatgg
CATTTTAAGCACTTGgccggccgcccacgctaaaaagctctaacagagtg
atccattttgatttaatcgcaatcaaactcatcgaacataattgtaatcg
aacattaatccaatgtagttgacaatcaatcaaaccaatcgaacatagtc
aactatcaatcgaacattactcaaacgcaatcgaacacaatcgaatatta
cccaggaatcggccgttcgattaagattcgattacgttcgacaatcgaat
cgcaattattcgatcgcgttcgattacgtttgattggttcgattgcgatt
tttgttcgaagttgttcgattgacaccgtctggctacCTAGGTGCTAGCT
ATTTGACACTTTTACAGCTATCTTGTCGTCTTGTTGGTTCAAACTTTATG
CTTTACAGGCTCAGCTCAAGGGGATATCCTTGCAATTGATGGATGGGGTT
CTGTTATTTGGTTATTTCTGGCGGCTGGCTGCGACCAGTTGCAAATGGGC
CATTCCTGAAAATCTTTGTTACCCCTGTCAGGCGACgtacattgaaaatt
tttttctagcctcggtACTCGGATCGGAaacaatgggccattccagacag
ttagtcacactaggaaatctagctttcagcaAAAACAACATCACTCattg
atggttatgattttttcacagaacatatagtaaaactattcaggaactta
gacctttttacagaacttcaaaaaatctgttagttctggagatatattga
aaagtttagacatgggtagttcgcgttcgtgtttcgcgttcccaaaccaa
acgcacgtgagccggagcagccaaaatcaaccaaccaaaatttgtcattc
aattcccgagacagcgcttcgatttttaaggcctagtttatacgctaaag
taaaaacaattccgcacatgtaaatggaatgggtcagtgtttgaggtccg
gcacaccacaattttttttctagcgGTCCGGTGGTcggaaattttgatga
aaatccatgtactttcgCCTTTCGCAAAATGTGTCGGACTGGCCTTGGAA
AtgttgaattttggtgaaaacttttgccctcggaaatcctgtgttcAGGT
GTTGTCCGCCCCCCCTGTTATAGACAAATTCTAGAATGgcccaatttttt
ttccagccAGCAGTGGTGGCTGTGGTTggaaattctgatgaaaatcTCCA
TGTACATTGGCAACAAAATATGcgtcggaaattccactcttttttgccct
ttttaatTCAAtagccttggaaattcatacattttgtcgcaaattctgga
atggcccaataatACAATGGGTTGAAGATTACTAATTGCCCAGTGTAAgc
agtactcttaggtgccaaataaacggcccccccNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcccccccccgtttatt
cgaaccccccctgtttatttggcacctaagagtaagtgTATTTAGGTAAA
TGTATAAAATTGTATTTACTTCATTCATTATCACAAAAATAGATATTTCT
AGAAAATCTGCATCTGAAAAAAGTAATTATCAACCATTCAAGTCATCTTG
CTCTCTCAAAGGGCATGAATatcgtgagatcgggtaacttgcacaATGCA
CTCCACTAACTCTTATAATAACATAtgccgtgaagtcgggtaacttgcat
cagttgagggaaacttgcatagccatcaaatgactgaccaatcaaattaA
AAGcagcaaaaattcaaaacaaatgaactacgcagctccgcttgcagatc
tactctaccatttttgttttgatttaactttgtattttagtGACCAGata
ggtcattcatttgagggctatgcatagtgtattttttaatacggcgttca
ttaactcaaagttttagttctagttctattaattaatcacataatacgct
aacgtacatcatcatgatattgaaaataaaagtaatcaaaaaTACCTAAT
AACAAGTGAAAACAGCTAAAGCTAAAAGGGGCGAGATATGACTGGAGCTG
AAAGACCACCACAAGGATATAGTAATAATGTAGTAAAGTGAGAGGCTAAT
GTGATCGTAGACTTGAAAGAAATATACATTAAAATCATacattaaaatta
tacattaaaatctttagataatatataaatataaatatgattACTGTACT
TGAAATTTTAAATACTATAATTCAGTATTTTAAATAtaagctaaaaagaa
aatagtgAATAAATAGATTTTGCCTTGATCACAACCTGAGCTGAATAGAA
AATAGAATCAGTGAGAGTTTTTGAGATTAGAGGATGATGatatatttgaa
tattattttacaGAATAAATGTTGACTGTTTCAATTTGTCTTTTGCCTTT
TTCAATAGTTGTTTTGAAGAACACGACGGCCTATCGAATAACCCAcaaca
gttacctagagacaagataatttatcacgttttttattggctgagggaaa
gtataATGTATGTGGATTAATTTGTTATTCGAAAGGCCGCGtcgcgttct
ccaaaacaactagaTTTAAAGGTTAAATTAGCATTTTATGCCCATGATAT
CTTATTGCATTTTTACTGGGTATGGTAAACCCAATTCAAATGCGCACCCT
ATGCAATTGCAAGAATGTGCCAGACTGAACTTAAAAATTAAAGACTGAGA
CTAGCTCATTTTATATATGCTTATTAAAATTGCTTTTCATTCAATATTCC
TCAAATTTGGACCCTGACCCAGTAATATTTAAAACTCTTTGAAAAGCTGC
AAAATAATGTTATTTTGCATAAGATTCCTGTTCCTACACTAAGATTCTCC
TAATTTTTCTGGAATACCCTCTATTTTTTTGCAGGATGGCCGGCATAAGA
TAGGAAAGGGTTTTTTCTAAAGGCAGCTTGGGAAAAACCGCGTGTCCCGT
TTTTGGTGTAAATAAACTCATATTCTTTTAACACCCCCTGACAGCTGACA
ATTAGGCTAGGCTAGACttacctttttggacctaccccggtggggtagag
gtcctataaattaaccgatgtccgtccgttcgtctgttcgtccgtccgtc
tgttaccagcttttctcaggattNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
TTATGCCCATGATATCTTATTGCATTTTTACTGGGTATGGTAAACCCAAT
TCAAATGCGCACCCTATGCAATTGCAAGAATGTGCCAGACTGaacttaaa
aataaaagactGAGGCTAACTCATTTTATATAATATGCTTATTAAAATTG
CTTTTCATTCAATATTCCTCAAATTTGGACCCTGACCCAGTAATATTTAA
AACTCTTTGAAAAGCTGCAAAATAATGTTATTTTGCATAAGATTCCTGTT
CCTACACTAAGATTCTCCTAATTTTTCTGGGATACCCTCTATTTTTTGCA
GGATGGCTGCCATAAGATAGGAAAGGGTTTTTTCTAAAGGCAGCTCGGGA
AAAACCGCGTGTCTCGTTTTTGGTGTAAATAAACTCATATTCTTTTAACA
CCCACAGCTGACAATTAGGCTAGGCTAGAGTTACCTTTTTTCTCTTTCCT
CTTTCCTATTCCAACAATACAATGCTTACATAGTTGACACATAATTCACA
TTGACAGAAGTATTCCCTGCAATGTctgcaataaaaacaaaagtggtctc
ttcttctCAGTGGCTGCTTCCATAACTCTTTGAGCTTTAGGGTTTTGTGT
TTGTGTGCCGGATAAAGGAAGAAAGAAAGCCAGTTGCAAAATATTATATT
CATTAACATTATTGACATTAACAGTAAAAGATGGCAGATGATGGGTCAAA
AATCTTAAGATTCACATCTGATACTGCCAGTCCCAAGCATCAAGAACCCT
CTGGTAAGAAGTACCAAGCTACCGCAAAATATGACCGTAAAGCATTAAAG
AAAAGACTGGTAGTTGAAGAGTGGCTTCATTATGAATTACGAAGATTGTA
TCAGTGCAAGGTATTACTTTCTCATTTATTATTCTCTTAGGAGAGCCAAA
CCATAATACAAAAAATTGGTGTGACAGTTGAAGTTTAAACCACATTAGGT
GTACGAAAAGATTTGTTGTTACTTGAATAAGACTACTGCAAGAATGACTT
TTCTATATATACAATTGGGTTTATACACACTTCAAGATTTTCCCTACCTC
AAGAATCTTCAGATATTTTTGGTAGATAAATTCAAAGGAAAACTTTGGTC
AAAGAGAGATTGATCTTAGATATTTTACTCCAAGAAAAAGATagcaaaaa
acaacaagaaatgttACAGGTCCAGATGTATTTTTGTTTAATCATCTcct
ttaattcacttttttatagGAGGGAGAAGAGTATGGTGTGGAGATTGATC
TTGATATTTTACTCCAAGAAAAAGATGGTGAAAAGCAACAGGAAATGTTA
CAGGTGCAAATGTATTCTCGTTTAATCATTATAAATACCATAATTGTATG
TTTTGAGCatcaaaaaccttgaaaatgtttGATATCTTCACAAAAAACTA
TGAacacaacaattttggttaaGAAAATCTTAATTAAATAAAACCTTAAA
CATCAATAAAATTCCACCATATCCAAGGAAAaactattttaaagaaaaag
aaatcaaatttacTGTTTCCACTATAATCTGATTTTTTTATCATGCTCAC
TTggttatatatatattttttttttagaatttacttTCAGGATCAAAAGA
GCCTGTAGAAGTAAgtgttttgcaaagtttttgttttttattttgtttga
ttgCTCCCATCCAATTACTTCCATTACTTGCTTCACCCACCATTTTGTgg
gaaataaaatgaaatgaatcTAACCTTATATTGAATCAAACATAAAAAGC
CAAGATTGTGTGgatcaaaaaaggaaaacataaaaacacttttctttAAA
CAATATTTCAATCTTTACAGATCTTTATTATATGTCCTTATATTGAAATA
TCCATGTTTTTCTGTTTAGGAATTTATTCAAAATCTTTTGGAGAAGATAA
AAAGCATGtaagatgttttgatttttatcttcGTTACTTATTAGTGCAAC
TAATAAATTTGTGGTCCTGAAAGGACCAATTTACATTACCAATTTTGATT
TGGGGACCTGTGATAAGATAAAAAAGTTATTGAGTCTGATTGGTAAGATG
CTTAGTGTATAAAGGTGTATAtaaatgtgactccccaagcgatttaaagt
acctgaaaatgggACCGGTCTTTAGACGGTCTTTTAAGGGCCGGTAAATG
ACCggtaaaaatttaccaaaaggcCGCTACGAGTTTAGGGGACCGGTCCC
GATCGCTCGGTTGACATCCTTTTACAACAGTTTTTTGATGTGATTGTTAC
TAAAAATCACTAACTAGAGGCCTGGACCGGTCCAACGAGCGGCCACGACC
GGTCTAACGATCGGCCACGAGCGTCTAGAAGAGATCACATTTCTAGAAAG
TCTGGAGGCcgatctaaaacaaaaatttgaccgcTACTAGACCGCTCGTA
ATACCGGACCAAGACCGGtctgattttcaggtactttaaatcgcttggaG
AGTCACAAATTGTCTGGATGATTTTCTGGCACAAGATAACCTCGAAATAA
TTTAAATTCTAACTTTTAAAACTACCAACAGATTTCAAAATACCCATTAA
TTAAAATTGTgaacttttcttctttatttattttttagagaTGAAAATGT
CCTCCACAGAGCCTCAAGCAAAGAAACATTAattaactgaaaaaagaaaa
tatagcaattataaatataaaacaTAAAGAATTGGAGCTTTGGGACTCTA
AATTTTTATCTCATAAATTACATGTCATCTAGAAAGTAACATACTTTCAT
CATGCATGGTTTGAACATGATATACACATTTTCTACACAATATGAAGGTT
TTTAAACGACTAGCAGGCATTTAAAAGATGTTTttagtttgttattttta
tcttttgtatAATTTATCGGTATTATATTCGTTTATCTTTACACTTCGTA
TGTTGTTTCATTGACCCAAAGTATATTACAAATCAAACTGGCAATATACA
ATATTCTATGAAactgaaaatttacaaaaacgaCAATTAGTAATTCCATG
TTACCTAAGATAGCATACTTTAATCTGATTGATTTTCATGAGATTTGATT
GAGagccaaatttttttgatttattttcgtGAATCggcactttgaaaatt
tttgagagGGTTTTCAGGGAATCAACTCAGGGTTTTATTTCAGGATTTTA
TTTCAGGAGTTGGCAATCTCACGCAGTTCTGTGAGTTTCATTTTCACGAA
AAACGGCAAAAATTGGTTAAACGCTAAATCAAATCTCCTGAAAAGTTTTC
TGATTAAAGTAATTTTTAGTTGAACTCTTCATGCATTGAtattatttaac
attttttggattagtttcaattttttaaattttctcagaGAATTTATACA
TCATAGATTTTTATTTGTTCCAATTTTAAGTACAGCAATTTAttcatatt
atttaaaataaaacagTAAAGTAATATATTGAATCTAATTTTAATTGCAC
CTGAACTGAATACTTTACAAAACCGAACTTGACATAAATCTAAGGTTGgt
taaaatcctttaaaattttgttgcaCGCTTATTTTTAGTACGAAATCTTA
AACTAAAAGACCTCATTAAATTCTATAAATTCTAACGTTTTAGTAATATT
TTAGAAagtgtaatttttcaaatatttactagtttttgaaaaatatattc
tgTAATGAGTTTACAGTTGTCGTTCATCAGCGTTCATATTTTTTCTGTTC
AATTTGAATTAACATGTCTAAATGAAATGAGCTTCTAGAATGGTATCTAA
TCCAAATAGACCATTTTCCTgtaaatttgcaagatttgttgagatttttt
gaaaaatcatttttttgttcttttgtattTTATGTTTTACAGATTCTAca
tattaaaatgaaaaaataagattGTCAGATGGTGAAATGATGCGTAATAA
TGGATCCTTGTAAGTTTTTTAAGAAACCTTGTTATATAAATGGGCCAAAG
CTTAAATATCCATACCCAAAAACAACAAAGGCTTCATAATAGTTGGTTTA
GCGTTGGAAAGAAAATGCAGCTATAGTTGAGAGGCTTATTTAGAGCGAAC
CTACTAAGGCAATCATTCCACATATGCCATGACAAGGTGATTTTTACCGA
GAATGGCAATTCAGCTTCCAAAAGAccaatttttatcttttttttgaatt
attatttCAGTTCTAGCAAGAGCAAAATATAAGTATGATGGTGAACAGGC
AGATTACACTTTGAAGTTCGATGCATACAATATCATTACTATTTctgctg
aaaaagaaaatctttggcTTGGTACGCTAAATGGAAAGAAAGGATGGTTG
GACCAACATAGTGTTGAGGTAATTTCTAATGCATTTGCAGTAGTCAATCA
CCCCTCTGCGGATGAACATACTGATGATTATGGTATTAAGAATGGAGATA
TTGTTACTGTTGTTAATCCATACCACAAGGATTGGTGGGAAGTGCAATAC
AAGGACAAGAAGATTGTCTATCCTAGTGTTTTTGTTGATATTGTTGATAG
ATTTCGCATCGAAGGGAAAGCATTATTTGATTACCATTCTAATGATGGAC
AGGAATTATCTTTCAAGGAAGGTGATACTATTGGAAGAATAGTCTACATA
GATAATCATGATTGGTTACGTGGTCAAGTTGGTGATAGAGTTGGTTTATT
TCCACGTAATTTTGTGGATCTTGTTTTGAAACCTGTAAGAAAAGCAACTA
TCACAGATGACTATACTGCACTGGAAGCTGATGAGCTCAGTTTAGTATCT
GGCCATATTATAGATATTGTTGAAGATTTTGGTAATGGCTGGTTAGCTGC
TATCGATGGTAATAAACACGGTTTGTGCCCAGTTTCATTTATAAACTTTA
CTGAAGATGAAAAGAAGTCTGTTGCATCTGCGTCAACTATAAATGAATTG
TCAGTGGCTGAAGGTATTTCAATTTTCTATCAATATAGTCATAATGgttg
aaatctaaattttgttcTATTTTTCAGCTATATTCCTTCTTTATCTTCTt
tagaaaatgccaaaaagtaattttaaaatactttcattTTATTCCATACC
ATATTTTGGGTATTTAGCATCACTCTCTAAGGACAGCTTCTAAACGAAGA
GTGAAGATTTTAGAAGTTTCCCACATTGAATCACTTTAACTTTAATTATT
TCATTGTATCTTTTGGTTACTTTCTTAGATACAAAACTGACTGAACAGCT
GACATGCAGTATTTGTTTGGAGTATGCTGAGCAAGCTGTCGAAACCAGTT
GTTGTCATCATATTTTCTGTGAACCTTGtcttcaaaaagtgaaaaacaaa
gTATGCCCTCAGTGCAGGAAGAATTTCACAATGGTTGTTGCCTATTTAGC
GCGTCGTATGATAGGGGAGATGGAAACTAGTTGTACAAATGATTCTTGTG
GTATCAAAACAACACGGTCAGAACTTGTTCACCATCTATTGAATTGTCCA
TTCAGGAAATTTTGTTGTAAGTTATGTGTTTATGTGGGCTTAAAGAAGGA
TCTTGGTTTACACTTGATTAATGACCACTTGGATGAGACACTTGATAATT
GTAAACCTCTTTTTAACTAATTCACTTTTTTTGTCTTTTACATTGTCTTG
TTTGGTAAAATGTGAACGGGTCTACTGAAATCCCTATATGACTTGACTAT
TTTAAAAATTTAGTGTTTCATGCTTGACTACTTGTCACCAAATTCTCGTC
TTCTGTAAAATAAGCGCTTTTAGAAGGAGTTACCACAGTGCTAATCTAAA
TTTCAAACCACTTTCCCTTGAGATAGACCTTTTCATAAATTACGTCACAA
ACATCATTTGCCTCGTATTCAAACAATTTTCATGGTGGTCACATCCTTTG
AGACATTAAATGATTTTTTTATGAATAGAAAGTTGTTTTGATAAAATCCG
CTGGGAGTTAATTACCATGCCAATAATTTCAAAACGAGGCAAGTGATGTT
TGTGACGTAATTTATGGAAAGGTCTATTGTTTTGAGTTTTTTTGGTTTTC
AGGACCCTTGGGGTATTTTTTATTTTTATTGCATTTTTTTTATTTAAAGT
TTAAAATGATACAGAAGATTGATTCAGTTTCACTGCAAAAATTTCCAAGG
GAATTGTAAAGGGAGGATGCTATCCCATTCAAAACTTTGGGTAATTTAGT
ACTTTTAAGCTAGATTTTTTTTCTGAAAATAAAGTATGAGATGTTCCATT
TTGAGCTGCTAATCTTAATTGACTTTATTTGGATTATATTTTATACTCAT
TTAAAATTTTCTTTTTTTAAGATTTTGGTTTTTGTACTTTTATTTTTACT
AAGAGAATTGACTTCTTGTTTTTTTTATCTATTATAGTTGGATTGCTTTT
AATCATTTCAAAGAGCGATTCACTTTTATTTTGTTTTGTAGAATAAATAT
TTTTTTATAAGATGTAAGATAATTATTATATATTTTCATTTTCATTTTCG
AATAGAAACAAATT

Coding sequence (CDS) from alignment at scaffold_70:19025..30538+

>TCONS_00072056 ID=TCONS_00072056|Name=TCONS_00072056|organism=Clytia hemisphaerica|type=CDS|length=2529bp|location=Sequence derived from alignment at scaffold_70:19025..30538+ (Clytia hemisphaerica)
ATGGAAAGAAAGGATGGTTGGACCAACATAGTGTTGAGATTTCGCATCGA
AGGGAAAGCATTATTTGATTACCATTCTAATGATGGACAGGAATTATCTT
TCAAGGAAGGTGATACTATTGGAAGAATAGTCTACATAGATAATCATGAT
TGGTTACGTGGTCAAGTTGGTGATAGAGTTGGTTTATTTCCACGTAATTT
TGTGGATCTTGTTTTGAAACCTGTAAGAAAAGCAACTATCACAGATGACT
ATACTGCACTGGAAGCTGATGAGCTCAGTTTAGTATCTGGCCATATTATA
GATATTGTTGAAGATTTTGGTAATGGCTGGTTAGCTGCTATCGATGGTAA
TAAACACGGTTTGTGCCCAGTTTCATTTATAAACTTTACTGAAGATGAAA
AGAAGTCTGTTGCATCTGCGTCAACTATAAATGAATTGTCAGTGGCTGAA
GATACAAAACTGACTGAACAGCTGACATGCAGTATTTGTTTGGAGTATGC
TGAGCAAGCTGTCGAAACCAGTTGTTGTCATCATATTTTCTGTGAACCTT
GtcttcaaaaagtgaaaaacaaagTATGCCCTCAGTGCAGGAAGAATTTC
ACAATGGTTGTTGCCTATTTAGCGCGTCGTATGATAGGGGAGATGGAAAC
TAGTTGTACAAATGATTCTTGTGGTATCAAAACAACACGGTCAGAACTTG
TTCACCATCTATTGAATTGTCCATTCAGGAAATTTTGTTGTAAGTTATGT
GTTTATGTGGGCTTAAAGAAGGATCTTGGTTTACACTTGATTAATGACCA
CTTGGATGAGACACTTGATAATTGTAAACCTCTTTTTAACTAAATGGAAA
GAAAGGATGGTTGGACCAACATAGTGTTGAGATTTCGCATCGAAGGGAAA
GCATTATTTGATTACCATTCTAATGATGGACAGGAATTATCTTTCAAGGA
AGGTGATACTATTGGAAGAATAGTCTACATAGATAATCATGATTGGTTAC
GTGGTCAAGTTGGTGATAGAGTTGGTTTATTTCCACGTAATTTTGTGGAT
CTTGTTTTGAAACCTGTAAGAAAAGCAACTATCACAGATGACTATACTGC
ACTGGAAGCTGATGAGCTCAGTTTAGTATCTGGCCATATTATAGATATTG
TTGAAGATTTTGGTAATGGCTGGTTAGCTGCTATCGATGGTAATAAACAC
GGTTTGTGCCCAGTTTCATTTATAAACTTTACTGAAGATGAAAAGAAGTC
TGTTGCATCTGCGTCAACTATAAATGAATTGTCAGTGGCTGAAGATACAA
AACTGACTGAACAGCTGACATGCAGTATTTGTTTGGAGTATGCTGAGCAA
GCTGTCGAAACCAGTTGTTGTCATCATATTTTCTGTGAACCTTGtcttca
aaaagtgaaaaacaaagTATGCCCTCAGTGCAGGAAGAATTTCACAATGG
TTGTTGCCTATTTAGCGCGTCGTATGATAGGGGAGATGGAAACTAGTTGT
ACAAATGATTCTTGTGGTATCAAAACAACACGGTCAGAACTTGTTCACCA
TCTATTGAATTGTCCATTCAGGAAATTTTGTTGTAAGTTATGTGTTTATG
TGGGCTTAAAGAAGGATCTTGGTTTACACTTGATTAATGACCACTTGGAT
GAGACACTTGATAATTGTAAACCTCTTTTTAACTAAATGGAAAGAAAGGA
TGGTTGGACCAACATAGTGTTGAGATTTCGCATCGAAGGGAAAGCATTAT
TTGATTACCATTCTAATGATGGACAGGAATTATCTTTCAAGGAAGGTGAT
ACTATTGGAAGAATAGTCTACATAGATAATCATGATTGGTTACGTGGTCA
AGTTGGTGATAGAGTTGGTTTATTTCCACGTAATTTTGTGGATCTTGTTT
TGAAACCTGTAAGAAAAGCAACTATCACAGATGACTATACTGCACTGGAA
GCTGATGAGCTCAGTTTAGTATCTGGCCATATTATAGATATTGTTGAAGA
TTTTGGTAATGGCTGGTTAGCTGCTATCGATGGTAATAAACACGGTTTGT
GCCCAGTTTCATTTATAAACTTTACTGAAGATGAAAAGAAGTCTGTTGCA
TCTGCGTCAACTATAAATGAATTGTCAGTGGCTGAAGATACAAAACTGAC
TGAACAGCTGACATGCAGTATTTGTTTGGAGTATGCTGAGCAAGCTGTCG
AAACCAGTTGTTGTCATCATATTTTCTGTGAACCTTGtcttcaaaaagtg
aaaaacaaagTATGCCCTCAGTGCAGGAAGAATTTCACAATGGTTGTTGC
CTATTTAGCGCGTCGTATGATAGGGGAGATGGAAACTAGTTGTACAAATG
ATTCTTGTGGTATCAAAACAACACGGTCAGAACTTGTTCACCATCTATTG
AATTGTCCATTCAGGAAATTTTGTTGTAAGTTATGTGTTTATGTGGGCTT
AAAGAAGGATCTTGGTTTACACTTGATTAATGACCACTTGGATGAGACAC
TTGATAATTGTAAACCTCTTTTTAACTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044752XLOC_044752Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072056-proteinTCONS_00072056-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072056-exon-scaffold_70-1491911889:19025..19175TCONS_00072056-exon-scaffold_70-1491911889:19025..19175Clytia hemisphaericaexon
TCONS_00072056-exon-scaffold_70-1510915933:19025..19175TCONS_00072056-exon-scaffold_70-1510915933:19025..19175Clytia hemisphaericaexon
TCONS_00072056-exon-scaffold_70-1575043694:19025..19175TCONS_00072056-exon-scaffold_70-1575043694:19025..19175Clytia hemisphaericaexon
TCONS_00072056-exon-scaffold_70-1491911889:24749..24934TCONS_00072056-exon-scaffold_70-1491911889:24749..24934Clytia hemisphaericaexon
TCONS_00072056-exon-scaffold_70-1510915933:24749..24934TCONS_00072056-exon-scaffold_70-1510915933:24749..24934Clytia hemisphaericaexon
TCONS_00072056-exon-scaffold_70-1575043694:24749..24934TCONS_00072056-exon-scaffold_70-1575043694:24749..24934Clytia hemisphaericaexon
TCONS_00072056-exon-scaffold_70-1491911889:25294..25377TCONS_00072056-exon-scaffold_70-1491911889:25294..25377Clytia hemisphaericaexon
TCONS_00072056-exon-scaffold_70-1510915933:25294..25377TCONS_00072056-exon-scaffold_70-1510915933:25294..25377Clytia hemisphaericaexon
TCONS_00072056-exon-scaffold_70-1575043694:25294..25377TCONS_00072056-exon-scaffold_70-1575043694:25294..25377Clytia hemisphaericaexon
TCONS_00072056-exon-scaffold_70-1491911889:25652..25684TCONS_00072056-exon-scaffold_70-1491911889:25652..25684Clytia hemisphaericaexon
TCONS_00072056-exon-scaffold_70-1510915933:25652..25684TCONS_00072056-exon-scaffold_70-1510915933:25652..25684Clytia hemisphaericaexon
TCONS_00072056-exon-scaffold_70-1575043694:25652..25684TCONS_00072056-exon-scaffold_70-1575043694:25652..25684Clytia hemisphaericaexon
TCONS_00072056-exon-scaffold_70-1491911889:25944..25981TCONS_00072056-exon-scaffold_70-1491911889:25944..25981Clytia hemisphaericaexon
TCONS_00072056-exon-scaffold_70-1510915933:25944..25981TCONS_00072056-exon-scaffold_70-1510915933:25944..25981Clytia hemisphaericaexon
TCONS_00072056-exon-scaffold_70-1575043694:25944..25981TCONS_00072056-exon-scaffold_70-1575043694:25944..25981Clytia hemisphaericaexon
TCONS_00072056-exon-scaffold_70-1491911889:26663..27983TCONS_00072056-exon-scaffold_70-1491911889:26663..27983Clytia hemisphaericaexon
TCONS_00072056-exon-scaffold_70-1510915933:26663..27983TCONS_00072056-exon-scaffold_70-1510915933:26663..27983Clytia hemisphaericaexon
TCONS_00072056-exon-scaffold_70-1575043694:26663..27983TCONS_00072056-exon-scaffold_70-1575043694:26663..27983Clytia hemisphaericaexon
TCONS_00072056-exon-scaffold_70-1491911889:28235..28392TCONS_00072056-exon-scaffold_70-1491911889:28235..28392Clytia hemisphaericaexon
TCONS_00072056-exon-scaffold_70-1510915933:28235..28392TCONS_00072056-exon-scaffold_70-1510915933:28235..28392Clytia hemisphaericaexon
TCONS_00072056-exon-scaffold_70-1575043694:28235..28392TCONS_00072056-exon-scaffold_70-1575043694:28235..28392Clytia hemisphaericaexon
TCONS_00072056-exon-scaffold_70-1491911889:28575..28987TCONS_00072056-exon-scaffold_70-1491911889:28575..28987Clytia hemisphaericaexon
TCONS_00072056-exon-scaffold_70-1510915933:28575..28987TCONS_00072056-exon-scaffold_70-1510915933:28575..28987Clytia hemisphaericaexon
TCONS_00072056-exon-scaffold_70-1575043694:28575..28987TCONS_00072056-exon-scaffold_70-1575043694:28575..28987Clytia hemisphaericaexon
TCONS_00072056-exon-scaffold_70-1491911889:29253..30538TCONS_00072056-exon-scaffold_70-1491911889:29253..30538Clytia hemisphaericaexon
TCONS_00072056-exon-scaffold_70-1510915933:29253..30538TCONS_00072056-exon-scaffold_70-1510915933:29253..30538Clytia hemisphaericaexon
TCONS_00072056-exon-scaffold_70-1575043694:29253..30538TCONS_00072056-exon-scaffold_70-1575043694:29253..30538Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_70supercontigscaffold_70:19025..30538 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.28719	0.890203	2.42131	3.63233	9.26972	5.72263	7.39843	7.79734	5.89739	5.60296	7.01141	4.84806	3.98044	3.4661	5.52348	5.95161	5.35052	4.50822	3.28598	3.84216	5.48525	4.73484	6.00317	6.75453	3.11681	4.18243	7.8217	4.73184	7.6414	6.84357
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR001452SH3_domain
IPR013083Znf_RING/FYVE/PHD
IPR017907Znf_RING_CS
IPR008974TRAF-like
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072056 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top