TCONS_00072056-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00072056-protein
Unique NameTCONS_00072056-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length280

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00072056-protein ID=TCONS_00072056-protein|Name=TCONS_00072056-protein|organism=Clytia hemisphaerica|type=polypeptide|length=280bp
MERKDGWTNIVLRFRIEGKALFDYHSNDGQELSFKEGDTIGRIVYIDNHD
WLRGQVGDRVGLFPRNFVDLVLKPVRKATITDDYTALEADELSLVSGHII
DIVEDFGNGWLAAIDGNKHGLCPVSFINFTEDEKKSVASASTINELSVAE
DTKLTEQLTCSICLEYAEQAVETSCCHHIFCEPCLQKVKNKVCPQCRKNF
TMVVAYLARRMIGEMETSCTNDSCGIKTTRSELVHHLLNCPFRKFCCKLC
VYVGLKKDLGLHLINDHLDETLDNCKPLFN
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_044752XLOC_044752Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00072056TCONS_00072056Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR001452SH3_domain
IPR013083Znf_RING/FYVE/PHD
IPR017907Znf_RING_CS
IPR008974TRAF-like
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 160..196
e-value: 8.1E-5
score: 32.0
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 160..197
score: 11.855
IPR001841Zinc finger, RING-typeCDDcd00162RINGcoord: 159..200
e-value: 2.27564E-8
score: 48.2108
IPR001452SH3 domainSMARTSM00326SH3_2coord: 76..131
e-value: 0.0092
score: 25.2
coord: 16..72
e-value: 1.7E-12
score: 57.5
IPR001452SH3 domainPFAMPF00018SH3_1coord: 19..64
e-value: 2.7E-10
score: 39.6
IPR001452SH3 domainPROSITEPS50002SH3coord: 19..73
score: 12.549
IPR001452SH3 domainPROSITEPS50002SH3coord: 83..132
score: 9.716
IPR001452SH3 domainSUPERFAMILY50044SH3-domaincoord: 18..71
IPR001452SH3 domainSUPERFAMILY50044SH3-domaincoord: 75..132
NoneNo IPR availableGENE3D1.10.1170.10coord: 118..208
e-value: 4.6E-13
score: 49.2
NoneNo IPR availablePFAMPF13920zf-C3HC4_3coord: 157..201
e-value: 2.7E-7
score: 30.2
NoneNo IPR availableGENE3D2.30.30.40coord: 15..69
e-value: 2.5E-14
score: 52.0
NoneNo IPR availableGENE3D2.30.30.40coord: 70..113
e-value: 3.0E-8
score: 32.8
NoneNo IPR availableCDDcd00174SH3coord: 19..67
e-value: 6.16074E-14
score: 63.2507
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 150..205
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 209..263
e-value: 4.3E-7
score: 29.5
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 176..185
IPR008974TRAF-likeSUPERFAMILY49599TRAF domain-likecoord: 218..272

Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072056-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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