TCONS_00072049 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072049
Unique NameTCONS_00072049
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length345

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072049 ID=TCONS_00072049|Name=TCONS_00072049|organism=Clytia hemisphaerica|type=transcript|length=345bp
TGACGATCCCAGTCCAGAAGATGCCAAGCTGTTATCATTCATCAACTCGA
CCCTTGCTACCATCAAAGAGTTTGTCTTAAACTCAAATAATTACAAACGA
CAACTCAATCGAAGTCAAGAAAGATCTCTCAAGTCTTCTGATGATGCAAA
GTACAAACGTACATgaacattgattccatcaccCAAAGTATGGCCCTCGT
CAAGTCCAGTTTATCACCTGATTTCGACGCAATAAGTGATGCTCAACTCA
TCgagctgaaaaaattcttcgACATCCCTAGCAACTACAGTCATCCAAAT
TTCGGAGAGGTATGAACGTTTACTACAATCAGATATCAACGACAC
Run BLAST on NCBI

transcript from alignment at scaffold_7:10269..10613

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072049 ID=TCONS_00072049|Name=TCONS_00072049|organism=Clytia hemisphaerica|type=transcript|length=345bp|location=Sequence derived from alignment at scaffold_7:10269..10613 (Clytia hemisphaerica)
GTGTCGTTGATATCTGATTGTAGTAAACGTTCATACCTCTCCGAAATTTG
GATGACTGTAGTTGCTAGGGATGTcgaagaattttttcagctcGATGAGT
TGAGCATCACTTATTGCGTCGAAATCAGGTGATAAACTGGACTTGACGAG
GGCCATACTTTGggtgatggaatcaatgttcATGTACGTTTGTACTTTGC
ATCATCAGAAGACTTGAGAGATCTTTCTTGACTTCGATTGAGTTGTCGTT
TGTAATTATTTGAGTTTAAGACAAACTCTTTGATGGTAGCAAGGGTCGAG
TTGATGAATGATAACAGCTTGGCATCTTCTGGACTGGGATCGTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044745XLOC_044745Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072049-exon-scaffold_7-1491911889:10269..10613TCONS_00072049-exon-scaffold_7-1491911889:10269..10613Clytia hemisphaericaexon
TCONS_00072049-exon-scaffold_7-1510915933:10269..10613TCONS_00072049-exon-scaffold_7-1510915933:10269..10613Clytia hemisphaericaexon
TCONS_00072049-exon-scaffold_7-1575043694:10269..10613TCONS_00072049-exon-scaffold_7-1575043694:10269..10613Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:10269..10613 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.17384	2.79823	5.0212	2.02278	0.703582	0	0.335383	0.627963	0.879303	1.63374	0.264291	1.85569	1.49207	1.62157	1.03689	2.22549	2.34996	0.401439	0	0	0.252219	0.369071	0.299103	0.543855	1.12032	1.24982	0.357698	0	0.868619	0.294995
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072049 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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