TCONS_00072039 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072039
Unique NameTCONS_00072039
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length225

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072039 ID=TCONS_00072039|Name=TCONS_00072039|organism=Clytia hemisphaerica|type=transcript|length=225bp
ACCCCCTTATTTAGGAGAGACAAGAGCGACTCACTTTCTGTTTGACCGCG
CTTAAACGCGTTTCTTAAATATGGCCCGATctatattattacttttcaca
aaaTTCTCATGATGTAGATCGGCCTTTAGATTGATAGACCCTNGCGTTTC
TTAAATATGGCCCGATctatattattacttttcacaaaaTTCTCATGATG
TAGATCGGCCTTTAGATTGATAGAC
Run BLAST on NCBI

transcript from alignment at scaffold_69:125571..125795

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072039 ID=TCONS_00072039|Name=TCONS_00072039|organism=Clytia hemisphaerica|type=transcript|length=225bp|location=Sequence derived from alignment at scaffold_69:125571..125795 (Clytia hemisphaerica)
GTCTATCAATCTAAAGGCCGATCTACATCATGAGAAttttgtgaaaagta
ataatatagATCGGGCCATATTTAAGAAACGCNAGGGTCTATCAATCTAA
AGGCCGATCTACATCATGAGAAttttgtgaaaagtaataatatagATCGG
GCCATATTTAAGAAACGCGTTTAAGCGCGGTCAAACAGAAAGTGAGTCGC
TCTTGTCTCTCCTAAATAAGGGGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044735XLOC_044735Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072039-exon-scaffold_69-1491911889:125571..125795TCONS_00072039-exon-scaffold_69-1491911889:125571..125795Clytia hemisphaericaexon
TCONS_00072039-exon-scaffold_69-1510915933:125571..125795TCONS_00072039-exon-scaffold_69-1510915933:125571..125795Clytia hemisphaericaexon
TCONS_00072039-exon-scaffold_69-1575043694:125571..125795TCONS_00072039-exon-scaffold_69-1575043694:125571..125795Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_69supercontigscaffold_69:125571..125795 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.28746	1.11532	0	1.26694	0	1.21881	0	0	1.9276	2.38764	3.47625	6.09374	4.56395	7.89951	5.84502	3.48478	12.0203	4.40015	2.43162	1.27226	2.21164	6.47258	1.31138	0	0	0	4.70484	0	1.26945	6.46684
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072039 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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