TCONS_00072025 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072025
Unique NameTCONS_00072025
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length328

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072025 ID=TCONS_00072025|Name=TCONS_00072025|organism=Clytia hemisphaerica|type=transcript|length=328bp
NNGTTGACAGCATGTTGAACACGTTTCCATTGTCTTCGTGAATATCCAGC
TGATGAATCACTGAAGGCACCAGGTGGTGGTAACACAATCTTGGACTTTC
CAGTTAACAGCATCATTGGAGTTATTGGCTTCAAACTCAAAGGATCAGAG
ATATTCTCCACAGTCAAAGGTCGAGAATTCAAAATACATTCAACCTCACA
CAGCAATGTCCTGAAAGACTCATCATTGTACGATTGGCTATGTGTCAATA
GAATACCATTCAAAACATTACGAGCACTACGAATTTGACGCTCCCAAACA
CCACCAAAATGGCTCGAATATGGGGGNN
Run BLAST on NCBI

protein sequence of TCONS_00072025-protein

>TCONS_00072025-protein ID=TCONS_00072025-protein|Name=TCONS_00072025-protein|organism=Clytia hemisphaerica|type=polypeptide|length=108bp
PPYSSHFGGVWERQIRSARNVLNGILLTHSQSYNDESFRTLLCEVECILN
SRPLTVENISDPLSLKPITPMMLLTGKSKIVLPPPGAFSDSSAGYSRRQW
KRVQHAVN
Run BLAST on NCBI

transcript from alignment at scaffold_68:111291..111618

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072025 ID=TCONS_00072025|Name=TCONS_00072025|organism=Clytia hemisphaerica|type=transcript|length=328bp|location=Sequence derived from alignment at scaffold_68:111291..111618 (Clytia hemisphaerica)
NNCCCCCATATTCGAGCCATTTTGGTGGTGTTTGGGAGCGTCAAATTCGT
AGTGCTCGTAATGTTTTGAATGGTATTCTATTGACACATAGCCAATCGTA
CAATGATGAGTCTTTCAGGACATTGCTGTGTGAGGTTGAATGTATTTTGA
ATTCTCGACCTTTGACTGTGGAGAATATCTCTGATCCTTTGAGTTTGAAG
CCAATAACTCCAATGATGCTGTTAACTGGAAAGTCCAAGATTGTGTTACC
ACCACCTGGTGCCTTCAGTGATTCATCAGCTGGATATTCACGAAGACAAT
GGAAACGTGTTCAACATGCTGTCAACNN

Coding sequence (CDS) from alignment at scaffold_68:111291..111618

>TCONS_00072025 ID=TCONS_00072025|Name=TCONS_00072025|organism=Clytia hemisphaerica|type=CDS|length=324bp|location=Sequence derived from alignment at scaffold_68:111291..111618 (Clytia hemisphaerica)
CCCCCATATTCGAGCCATTTTGGTGGTGTTTGGGAGCGTCAAATTCGTAG
TGCTCGTAATGTTTTGAATGGTATTCTATTGACACATAGCCAATCGTACA
ATGATGAGTCTTTCAGGACATTGCTGTGTGAGGTTGAATGTATTTTGAAT
TCTCGACCTTTGACTGTGGAGAATATCTCTGATCCTTTGAGTTTGAAGCC
AATAACTCCAATGATGCTGTTAACTGGAAAGTCCAAGATTGTGTTACCAC
CACCTGGTGCCTTCAGTGATTCATCAGCTGGATATTCACGAAGACAATGG
AAACGTGTTCAACATGCTGTCAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044725XLOC_044725Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072025-proteinTCONS_00072025-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072025-exon-scaffold_68-1491911889:111291..111618TCONS_00072025-exon-scaffold_68-1491911889:111291..111618Clytia hemisphaericaexon
TCONS_00072025-exon-scaffold_68-1510915933:111291..111618TCONS_00072025-exon-scaffold_68-1510915933:111291..111618Clytia hemisphaericaexon
TCONS_00072025-exon-scaffold_68-1575043694:111291..111618TCONS_00072025-exon-scaffold_68-1575043694:111291..111618Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_68supercontigscaffold_68:111291..111618 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.58264	8.43013	1.95309	1.54598	1.377	0.38244	0.38328	0.358822	0	0.622353	0	0.229784	0.281465	0	0.392887	0.243336	0.223798	0.458771	0.782116	1.49683	0.68374	1.94468	1.38394	0.488076	0.640157	0	1.22635	0.436263	0.882493	1.74038
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072025 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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