TCONS_00072023 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072023
Unique NameTCONS_00072023
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length450

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072023 ID=TCONS_00072023|Name=TCONS_00072023|organism=Clytia hemisphaerica|type=transcript|length=450bp
attttgtttatcaCAGTCCTCTAAAGAAAGTCATTGAGACAACACGTAAA
ATATTTCATGGTCCACACGTGCCGCATattaaaaagagaagaaaaagttA
AAGTGTGTGAgtgttgagaaaaaaaattgtaagaaagaagagaaacataa
aaattaaaaaggcgAAACAAGAAAATACAtaataaaagttgaaaaatggt
TGATGTTGAGAAACTTGGCAAGAAGCGCAACGCTCTCACATCACATGTTA
ACAAGTTGGTTTTGGAGTGCGAAGAATGGAACAAGGATgctaaaagtaac
aaaaacGCTCTTGAAACCACTTGTaaagttttaaataaaaagttacaaat
taTCATTGAGATTACGGATAACATCGTGGATGAATTAGACGATGAAGAGC
AAATGGGAATACAATATGAGAAGTGTTCCAAAGTTGAGCGTCGAGTTGAN
Run BLAST on NCBI

transcript from alignment at scaffold_68:99765..100214

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072023 ID=TCONS_00072023|Name=TCONS_00072023|organism=Clytia hemisphaerica|type=transcript|length=450bp|location=Sequence derived from alignment at scaffold_68:99765..100214 (Clytia hemisphaerica)
NTCAACTCGACGCTCAACTTTGGAACACTTCTCATATTGTATTCCCATTT
GCTCTTCATCGTCTAATTCATCCACGATGTTATCCGTAATCTCAATGAta
atttgtaactttttatttaaaactttACAAGTGGTTTCAAGAGCgttttt
gttacttttagcATCCTTGTTCCATTCTTCGCACTCCAAAACCAACTTGT
TAACATGTGATGTGAGAGCGTTGCGCTTCTTGCCAAGTTTCTCAACATCA
accatttttcaacttttattaTGTATTTTCTTGTTTcgcctttttaattt
ttatgtttctcttctttcttacaattttttttctcaacacTCACACACTT
TaactttttcttctctttttaatATGCGGCACGTGTGGACCATGAAATAT
TTTACGTGTTGTCTCAATGACTTTCTTTAGAGGACTGtgataaacaaaat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044723XLOC_044723Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072023-exon-scaffold_68-1491911889:99765..100214TCONS_00072023-exon-scaffold_68-1491911889:99765..100214Clytia hemisphaericaexon
TCONS_00072023-exon-scaffold_68-1510915933:99765..100214TCONS_00072023-exon-scaffold_68-1510915933:99765..100214Clytia hemisphaericaexon
TCONS_00072023-exon-scaffold_68-1575043694:99765..100214TCONS_00072023-exon-scaffold_68-1575043694:99765..100214Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_68supercontigscaffold_68:99765..100214 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.759142	0.157795	0.742238	0.978418	2.11618	2.73668	2.26332	3.93898	0.853815	1.20424	1.76773	0.278901	1.32158	2.05643	0.688274	0.462188	0	0.990167	0.85377	0.64513	5.50001	5.1589	1.48029	2.78675	0.663861	2.63223	6.04396	4.60162	6.45316	5.01605
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072023 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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