|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072018 ID=TCONS_00072018|Name=TCONS_00072018|organism=Clytia hemisphaerica|type=transcript|length=2591bp
acaggaaaaaatgttaaaaacccaggcctgggaacagggcattttcgggg
tgggttttcatcaaaaaaatttttgccttgggattttcattttgctataa
gttgaataaaaatgtgggtgtctttttagctattttacagacctgaaaaa
attttcggaTGAAAAACCCACCTGGGATTTGACcatttcccaggcctggg
ttTTTTAAAATGAGGACTGGATTGGGATTTGGCAATTTCCCAGGCCTGTG
TTTTTAtagctcaaaaaatgaaaattgtctAAAAAACAAACCCAAAACCC
ACCCTTGTATACAGGTCATTTCAAAGGCATGGGTTTTTTGAAGTCGGGTC
CGAAAATAGACAAATCCCAGGCCTGGGTTTTTCAAAGTGAGGACTTCATT
GGGATTTGGCAATTTCCCAGGCCTGCGTTTTTAtagctcaaaaaatgaaa
attgtttaaaaagcaAACCCAAAACCCACCCTTGTATACGGGTCATTTCC
AAGGCTTGGGTTTTTTGAAGTCGGGtccgaaaatggccaaatcccAGGCC
TGGGTTTTGGGGCTGTAAAACAGCCGTTTTCGGGTGGTTTTTCCATTGGA
AAATTGTATGAGTTAAAAGGAAAACAATCTTAGACTAGTTAACTGGCCAA
ATCCAAAGCCTGTATTCTTGTAGATGCGTTGAGAAGCTTATACTTAAAAG
TGAAAGTAGATAGATTATTTGAAATGTCGGGGTATCTTGGCAGAGACTTT
GTTTTTATCCTGAACCAAGATGAACAAAAAATAGAACATTGACGTAGAAT
ATTTGTTTCAAACTAATATCCTATTTTTCTGTCTATTTTTTGAGGAACTT
ATTTAAATAAGTTTATATATAGCTATTAAAATCTTTACAATCCTCTGATA
AATATTTATacaaacaaaacttgattttgtgACCAAATACTTCCTTAAAT
ATACCTATGCTCAAAAAACCGTTCTGATATCTCAGAAAATCTCTAATTAC
CAAAAATACAATCCAATAAGAATTTGAACTtgaggaaaatcgaaaaaata
aaaaaaggacgCATGCCCATCTCCTTCCACCACCTATTGAGGGTTTTCCA
CACCGATATTcatactttaaccggattataTTTCGTGAGCCAAAAAATTC
Gatttggatttaatttcgcgagtcagcgttttgaaaattttttgcgtgga
tttgatttcgcgaatgagcctgaaaacagctgaaGCAGTTTTTTGGCATA
AATAGCATGTTAAAAATTTCGCGtgatcgcgaaatttaatctcgcaaaag
ttaatccgattaaagtagtacactgaaaagggcaaaaataaTTAGATTCG
TTCGAAAATTGTTAAAGTACCGAGGAAAACAAGCCGAAggataataatat
aataatacaCAATGTTATAATAAGTTATTTTCCCTTAAATTAGTTGTATT
AAAttacgaaagtacttgataatCAAAACTGAAATTAGGTCTCTTCAGAT
CTACACATAAATATGTTTCTTCGTCTGTTTGATAGAGAATAACAACACGT
TTGATAAGACTTGCTTTTTTAACAACCACCTTTCCCGCATCTTTGTAAAT
AGAAAATTCTTTGAGGAGTGAGTTTGTTTTCTCGAAGGATTCTGCCCTCA
CGTATTTATGAGGCTCTCCGTTGAgtaattttattaaaatgaatTGAGTC
AATTGTCCTATCGAATTGTCTGAAAACAAGACGAATGATCCCTTTTTAAG
ATGGGTATTTGTTGAGGGTAAATAACAGGAGCGATACTCGGTGTAGAGTT
CTGCATTTAGTCCATCTGAACTTGTTACGTCAGCAATGGATTTGTCTAGT
TCGTGCGTGTTTCTATCACCACCAGCACCGATAAAAATGATCAAAGTCGA
TGGATCATCATCAAAGCCGACCATGCATACCCAAGCGTAGATCTTTGCAC
CTTCCAGACTTGAAACAACCTGGAGAATTAACACAAAAAGAGTTCTTTCA
AACAtcgggctcttccagaaaaaaaaaacgttcatGGGGGGGGGGAAGAT
AAGTTATCTTGAAagaaaaccctgaaaaactgccatgtccatgggATGAA
TTTGCgatgtccagggggtgaaaaaaagatcactgaaaaaataataaatc
cactatcccccatgaacggattttttctggaagaacccATTAATAAATGG
TTACAATAAGGTACGagggtgaaaaaataaaaccaaagtCTAATACAATA
GACATTCCATGAATCCGTTAAGCttgcttaaaattttgaaaatgaaccaa
TCAGCACTCGAAAAAAAAACCACGAAAGGATTGGAAATTTTGGCGTAAGT
ATGACATTATGCAGGCAAAGGCAGATCAAATTTTGCTTTGGCTGGGAGAG
GGGGTTGTATGCAAAATCCGCTGGGGTAAGTACTTTAAGCTTCTACTTTA
GTACTTTAAGCGAACAAACTTTCACGAGgtcgaaaattcgcgaaatttgc
gacatttactttcgcgaattcaaggaaaaaatgtttttcgcgagcatagc
gagcataaactttcgcgatttgGGTAATCAAAACGAAAAAT Run BLAST on NCBI protein sequence of TCONS_00072018-protein >TCONS_00072018-protein ID=TCONS_00072018-protein|Name=TCONS_00072018-protein|organism=Clytia hemisphaerica|type=polypeptide|length=193bp
MNVFFFWKSPMFERTLFVLILQVVSSLEGAKIYAWVCMVGFDDDPSTLII
FIGAGGDRNTHELDKSIADVTSSDGLNAELYTEYRSCYLPSTNTHLKKGS
FVLFSDNSIGQLTQFILIKLLNGEPHKYVRAESFEKTNSLLKEFSIYKDA
GKVVVKKASLIKRVVILYQTDEETYLCVDLKRPNFSFDYQVLS Run BLAST on NCBI transcript from alignment at scaffold_68:54155..56745 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072018 ID=TCONS_00072018|Name=TCONS_00072018|organism=Clytia hemisphaerica|type=transcript|length=2591bp|location=Sequence derived from alignment at scaffold_68:54155..56745 (Clytia hemisphaerica)
ATTTTTCGTTTTGATTACCcaaatcgcgaaagtttatgctcgctatgctc
gcgaaaaacattttttccttgaattcgcgaaagtaaatgtcgcaaatttc
gcgaattttcgacCTCGTGAAAGTTTGTTCGCTTAAAGTACTAAAGTAGA
AGCTTAAAGTACTTACCCCAGCGGATTTTGCATACAACCCCCTCTCCCAG
CCAAAGCAAAATTTGATCTGCCTTTGCCTGCATAATGTCATACTTACGCC
AAAATTTCCAATCCTTTCGTGGTTTTTTTTTCGAGTGCTGAttggttcat
tttcaaaattttaagcaaGCTTAACGGATTCATGGAATGTCTATTGTATT
AGactttggttttattttttcaccctCGTACCTTATTGTAACCATTTATT
AATgggttcttccagaaaaaatccgttcatgggggatagtggatttatta
ttttttcagtgatctttttttcaccccctggacatcGCAAATTCATccca
tggacatggcagtttttcagggttttctTTCAAGATAACTTATCTTCCCC
CCCCCCatgaacgttttttttttctggaagagcccgaTGTTTGAAAGAAC
TCTTTTTGTGTTAATTCTCCAGGTTGTTTCAAGTCTGGAAGGTGCAAAGA
TCTACGCTTGGGTATGCATGGTCGGCTTTGATGATGATCCATCGACTTTG
ATCATTTTTATCGGTGCTGGTGGTGATAGAAACACGCACGAACTAGACAA
ATCCATTGCTGACGTAACAAGTTCAGATGGACTAAATGCAGAACTCTACA
CCGAGTATCGCTCCTGTTATTTACCCTCAACAAATACCCATCTTAAAAAG
GGATCATTCGTCTTGTTTTCAGACAATTCGATAGGACAATTGACTCAatt
cattttaataaaattacTCAACGGAGAGCCTCATAAATACGTGAGGGCAG
AATCCTTCGAGAAAACAAACTCACTCCTCAAAGAATTTTCTATTTACAAA
GATGCGGGAAAGGTGGTTGTTAAAAAAGCAAGTCTTATCAAACGTGTTGT
TATTCTCTATCAAACAGACGAAGAAACATATTTATGTGTAGATCTGAAGA
GACCTAATTTCAGTTTTGattatcaagtactttcgtaaTTTAATACAACT
AATTTAAGGGAAAATAACTTATTATAACATTGtgtattattatattatta
tccTTCGGCTTGTTTTCCTCGGTACTTTAACAATTTTCGAACGAATCTAA
ttatttttgcccttttcagtgtactactttaatcggattaacttttgcga
gattaaatttcgcgatcaCGCGAAATTTTTAACATGCTATTTATGCCAAA
AAACTGCttcagctgttttcaggctcattcgcgaaatcaaatccacgcaa
aaaattttcaaaacgctgactcgcgaaattaaatccaaatCGAATTTTTT
GGCTCACGAAAtataatccggttaaagtatgAATATCGGTGTGGAAAACC
CTCAATAGGTGGTGGAAGGAGATGGGCATGcgtcctttttttattttttc
gattttcctcaAGTTCAAATTCTTATTGGATTGTATTTTTGGTAATTAGA
GATTTTCTGAGATATCAGAACGGTTTTTTGAGCATAGGTATATTTAAGGA
AGTATTTGGTcacaaaatcaagttttgtttgtATAAATATTTATCAGAGG
ATTGTAAAGATTTTAATAGCTATATATAAACTTATTTAAATAAGTTCCTC
AAAAAATAGACAGAAAAATAGGATATTAGTTTGAAACAAATATTCTACGT
CAATGTTCTATTTTTTGTTCATCTTGGTTCAGGATAAAAACAAAGTCTCT
GCCAAGATACCCCGACATTTCAAATAATCTATCTACTTTCACTTTTAAGT
ATAAGCTTCTCAACGCATCTACAAGAATACAGGCTTTGGATTTGGCCAGT
TAACTAGTCTAAGATTGTTTTCCTTTTAACTCATACAATTTTCCAATGGA
AAAACCACCCGAAAACGGCTGTTTTACAGCCCCAAAACCCAGGCCTggga
tttggccattttcggaCCCGACTTCAAAAAACCCAAGCCTTGGAAATGAC
CCGTATACAAGGGTGGGTTTTGGGTTtgctttttaaacaattttcatttt
ttgagctaTAAAAACGCAGGCCTGGGAAATTGCCAAATCCCAATGAAGTC
CTCACTTTGAAAAACCCAGGCCTGGGATTTGTCTATTTTCGGACCCGACT
TCAAAAAACCCATGCCTTTGAAATGACCTGTATACAAGGGTGGGTTTTGG
GTTTGTTTTTTagacaattttcattttttgagctaTAAAAACACAGGCCT
GGGAAATTGCCAAATCCCAATCCAGTCCTCATTTTAAAAaacccaggcct
gggaaatgGTCAAATCCCAGGTGGGTTTTTCAtccgaaaattttttcagg
tctgtaaaatagctaaaaagacacccacatttttattcaacttatagcaa
aatgaaaatcccaaggcaaaaatttttttgatgaaaacccaccccgaaaa
tgccctgttcccaggcctgggtttttaacattttttcctgt Coding sequence (CDS) from alignment at scaffold_68:54155..56745 >TCONS_00072018 ID=TCONS_00072018|Name=TCONS_00072018|organism=Clytia hemisphaerica|type=CDS|length=582bp|location=Sequence derived from alignment at scaffold_68:54155..56745 (Clytia hemisphaerica)
atgaacgttttttttttctggaagagcccgaTGTTTGAAAGAACTCTTTT
TGTGTTAATTCTCCAGGTTGTTTCAAGTCTGGAAGGTGCAAAGATCTACG
CTTGGGTATGCATGGTCGGCTTTGATGATGATCCATCGACTTTGATCATT
TTTATCGGTGCTGGTGGTGATAGAAACACGCACGAACTAGACAAATCCAT
TGCTGACGTAACAAGTTCAGATGGACTAAATGCAGAACTCTACACCGAGT
ATCGCTCCTGTTATTTACCCTCAACAAATACCCATCTTAAAAAGGGATCA
TTCGTCTTGTTTTCAGACAATTCGATAGGACAATTGACTCAattcatttt
aataaaattacTCAACGGAGAGCCTCATAAATACGTGAGGGCAGAATCCT
TCGAGAAAACAAACTCACTCCTCAAAGAATTTTCTATTTACAAAGATGCG
GGAAAGGTGGTTGTTAAAAAAGCAAGTCTTATCAAACGTGTTGTTATTCT
CTATCAAACAGACGAAGAAACATATTTATGTGTAGATCTGAAGAGACCTA
ATTTCAGTTTTGattatcaagtactttcgtaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072018-exon-scaffold_68-1491911889:54155..56745 | TCONS_00072018-exon-scaffold_68-1491911889:54155..56745 | Clytia hemisphaerica | exon |
| TCONS_00072018-exon-scaffold_68-1510915933:54155..56745 | TCONS_00072018-exon-scaffold_68-1510915933:54155..56745 | Clytia hemisphaerica | exon |
| TCONS_00072018-exon-scaffold_68-1575043694:54155..56745 | TCONS_00072018-exon-scaffold_68-1575043694:54155..56745 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_68 | supercontig | scaffold_68:54155..56745 . |
Blast
The following BLAST results are available for this feature:
|
