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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072004 ID=TCONS_00072004|Name=TCONS_00072004|organism=Clytia hemisphaerica|type=transcript|length=1531bp
ATATAAATTGATCAACTTCATATTATTAAATCAATAAAATCAGGTTTTAC
TAAATTTTACTAATTGTTTAAGTCTTTTAAGTTGGAAGAAACAAAAAGTC
TTTCAAAAAGTCTTGGATAGATGAGTCATTAAAGTAAGGTTAGTCCCCAA
ATATTATATTCAATgtcgccgtccactttgctcgacgacggtaaaaacac
caagataccgtcgtctgtttaggtgagcaaaggcgatatagagccgtaca
tcaactatcgactttgttttgtatcgactTTActtaccgtccccctcgat
ttatctcgaatacataaactcgctattaatACGTCTAAGCGACAATCAAA
GCAATCGTTATAACCACCGCAAAATAGAGTAACGCTCTCTTTACTTTCCC
ATTTTTAGCTGAACCATTATTGATTGATGACGTAGGTAATGATGACGTCG
CGTGGGATGTTGATGGTGTAATTGTTCCGTTCAAAGTGTTGTTAATTGTC
ATGGAGATTTGGTATGAAAACGAGGGTGAAACAGATTGTGGAGTTAAAGA
TGGTGTCGCTGTCGTCTTGGTAACAATATATGAAAACGAGATTGAGTATG
TTTTCGCGTTACATTTATTGTTAACAtgattgcataaattatgcatcATG
GTACAATTATCACATTGGATTTTAGATAATCGAGGATCCAAGGTAACGTT
CTTGAATACTGACGACATTGTCAACTCGCACAGATTTTTGGGACTGTATG
GACCTTGTCTTTGTAAAACGTCACATATTGAGCGGGCGTCAACATTACAC
TCACATGATGGGCGTCGTTGAAATTGGATCCCTGGAAATTGATCATTGAT
GTCTTGTCTTGTTGCAATACAAATATCTCTTACATCACATCCATTAGATG
ACGTGAAGAAACAAATCATTGCAAggaataatgaaaaaatgaatttattc
tCCATCCTTTTTCCAGCGATTTATATTGCAAACGttgtcaaaaaaacttt
aaatgaTTTCGGTTGCTCACAAATCGATTCTTTTTTATATTCGTATAACA
ACACAATATCGGTGGGTGATGGATCAAATGTTCATCGAGATTCACTTTAT
TTGGTTTTCTTCCTCTCCCAAATCGTCAAGATTAATATAATCGCTGTCTC
AAGATATAGAAACTTGCAGTAACTAGCCAGCAATCTTTTTAATACCGCAA
AGCATTTAAGCATTAAATAATTCAGTTTCTTCAATAGCTATTTATCATGT
GATTGCCTGGAAATGGTTTTTTATCGGTGCAGCATGCaaataaagaaatt
taatttactgaccaaaatatttgtttttgcaTCATCATAAACAACAACGT
AAAGACTGTGTTTTGTCCAATTAATCATTGAAATCACCCTGACAACTttg
taaataaaattcaaatttgatgACTTTGTTTTTTAACGACCTGACTTCTT
TGCCATGagtcaaacaaacaaataagAAATAATATATAAACTGTTTCCAA
attcgtttttctttttttattttctcaaaat Run BLAST on NCBI protein sequence of TCONS_00072004-protein >TCONS_00072004-protein ID=TCONS_00072004-protein|Name=TCONS_00072004-protein|organism=Clytia hemisphaerica|type=polypeptide|length=206bp
MENKFIFSLFLAMICFFTSSNGCDVRDICIATRQDINDQFPGIQFQRRPS
CECNVDARSICDVLQRQGPYSPKNLCELTMSSVFKNVTLDPRLSKIQCDN
CTMMHNLCNHVNNKCNAKTYSISFSYIVTKTTATPSLTPQSVSPSFSYQI
SMTINNTLNGTITPSTSHATSSLPTSSINNGSAKNGKVKRALLYFAVVIT
IALIVA Run BLAST on NCBI transcript from alignment at scaffold_66:103561..105091 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072004 ID=TCONS_00072004|Name=TCONS_00072004|organism=Clytia hemisphaerica|type=transcript|length=1531bp|location=Sequence derived from alignment at scaffold_66:103561..105091 (Clytia hemisphaerica)
attttgagaaaataaaaaaagaaaaacgaatTTGGAAACAGTTTATATAT
TATTTcttatttgtttgtttgactCATGGCAAAGAAGTCAGGTCGTTAAA
AAACAAAGTcatcaaatttgaattttatttacaaAGTTGTCAGGGTGATT
TCAATGATTAATTGGACAAAACACAGTCTTTACGTTGTTGTTTATGATGA
tgcaaaaacaaatattttggtcagtaaattaaatttctttatttGCATGC
TGCACCGATAAAAAACCATTTCCAGGCAATCACATGATAAATAGCTATTG
AAGAAACTGAATTATTTAATGCTTAAATGCTTTGCGGTATTAAAAAGATT
GCTGGCTAGTTACTGCAAGTTTCTATATCTTGAGACAGCGATTATATTAA
TCTTGACGATTTGGGAGAGGAAGAAAACCAAATAAAGTGAATCTCGATGA
ACATTTGATCCATCACCCACCGATATTGTGTTGTTATACGAATATAAAAA
AGAATCGATTTGTGAGCAACCGAAAtcatttaaagtttttttgacaaCGT
TTGCAATATAAATCGCTGGAAAAAGGATGGagaataaattcattttttca
ttattccTTGCAATGATTTGTTTCTTCACGTCATCTAATGGATGTGATGT
AAGAGATATTTGTATTGCAACAAGACAAGACATCAATGATCAATTTCCAG
GGATCCAATTTCAACGACGCCCATCATGTGAGTGTAATGTTGACGCCCGC
TCAATATGTGACGTTTTACAAAGACAAGGTCCATACAGTCCCAAAAATCT
GTGCGAGTTGACAATGTCGTCAGTATTCAAGAACGTTACCTTGGATCCTC
GATTATCTAAAATCCAATGTGATAATTGTACCATgatgcataatttatgc
aatcaTGTTAACAATAAATGTAACGCGAAAACATACTCAATCTCGTTTTC
ATATATTGTTACCAAGACGACAGCGACACCATCTTTAACTCCACAATCTG
TTTCACCCTCGTTTTCATACCAAATCTCCATGACAATTAACAACACTTTG
AACGGAACAATTACACCATCAACATCCCACGCGACGTCATCATTACCTAC
GTCATCAATCAATAATGGTTCAGCTAAAAATGGGAAAGTAAAGAGAGCGT
TACTCTATTTTGCGGTGGTTATAACGATTGCTTTGATTGTCGCTTAGACG
TattaatagcgagtttatgtattcgagataaatcgagggggacggtaagT
AAagtcgatacaaaacaaagtcgatagttgatgtacggctctatatcgcc
tttgctcacctaaacagacgacggtatcttggtgtttttaccgtcgtcga
gcaaagtggacggcgacATTGAATATAATATTTGGGGACTAACCTTACTT
TAATGACTCATCTATCCAAGACTTTTTGAAAGACTTTTTGTTTCTTCCAA
CTTAAAAGACTTAAACAATTAGTAAAATTTAGTAAAACCTGATTTTATTG
ATTTAATAATATGAAGTTGATCAATTTATAT Coding sequence (CDS) from alignment at scaffold_66:103561..105091 >TCONS_00072004 ID=TCONS_00072004|Name=TCONS_00072004|organism=Clytia hemisphaerica|type=CDS|length=621bp|location=Sequence derived from alignment at scaffold_66:103561..105091 (Clytia hemisphaerica)
ATGGagaataaattcattttttcattattccTTGCAATGATTTGTTTCTT
CACGTCATCTAATGGATGTGATGTAAGAGATATTTGTATTGCAACAAGAC
AAGACATCAATGATCAATTTCCAGGGATCCAATTTCAACGACGCCCATCA
TGTGAGTGTAATGTTGACGCCCGCTCAATATGTGACGTTTTACAAAGACA
AGGTCCATACAGTCCCAAAAATCTGTGCGAGTTGACAATGTCGTCAGTAT
TCAAGAACGTTACCTTGGATCCTCGATTATCTAAAATCCAATGTGATAAT
TGTACCATgatgcataatttatgcaatcaTGTTAACAATAAATGTAACGC
GAAAACATACTCAATCTCGTTTTCATATATTGTTACCAAGACGACAGCGA
CACCATCTTTAACTCCACAATCTGTTTCACCCTCGTTTTCATACCAAATC
TCCATGACAATTAACAACACTTTGAACGGAACAATTACACCATCAACATC
CCACGCGACGTCATCATTACCTACGTCATCAATCAATAATGGTTCAGCTA
AAAATGGGAAAGTAAAGAGAGCGTTACTCTATTTTGCGGTGGTTATAACG
ATTGCTTTGATTGTCGCTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072004-exon-scaffold_66-1491911889:103561..105091 | TCONS_00072004-exon-scaffold_66-1491911889:103561..105091 | Clytia hemisphaerica | exon |
| TCONS_00072004-exon-scaffold_66-1510915933:103561..105091 | TCONS_00072004-exon-scaffold_66-1510915933:103561..105091 | Clytia hemisphaerica | exon |
| TCONS_00072004-exon-scaffold_66-1575043694:103561..105091 | TCONS_00072004-exon-scaffold_66-1575043694:103561..105091 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_66 | supercontig | scaffold_66:103561..105091 . |
Blast
The following BLAST results are available for this feature:
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