TCONS_00071967 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071967
Unique NameTCONS_00071967
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length518

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071967 ID=TCONS_00071967|Name=TCONS_00071967|organism=Clytia hemisphaerica|type=transcript|length=518bp
TAGAAAAAATATCTCACTCTCTCAATCACGAACTGAAAGGTTTGCAAGGA
TATCAAAGAAGAGAGCTCGAAAGGGGGCTTTGTTAGGTTTGTTATCAATC
AACATGATTCTGCGAAATATTAATGATAGCATACTGTACTTCTTTATTTC
AAAGCAACTGATCATACCAATTACTCTCATGAATTGATCAAGCTTTTCTA
CCAAATTAAGCTAGGTAATAAAAATGATGCATTTCGACTTATATCGGGCT
GTTTCATCAATACCCATGGACTCATCGGTCGAAACATAActtatgatttt
tattttgagcattttagtggatatttaagtttttaagaTCATTACGAGGA
CATTTGAATGAAAAGAACTACAAGGATTGCAAAAGCTTTAAATAACACAC
AGGCAATTGTGAATAGCTTTGAGAAAGGTCTACTACTTATTGAATCAAGG
ATttgatttgaatgttttgattttgatatgttttaccGTGGTTACTCTTA
CTAAGATAAAAAAGCCGC
Run BLAST on NCBI

transcript from alignment at scaffold_65:272249..272766

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071967 ID=TCONS_00071967|Name=TCONS_00071967|organism=Clytia hemisphaerica|type=transcript|length=518bp|location=Sequence derived from alignment at scaffold_65:272249..272766 (Clytia hemisphaerica)
GCGGCTTTTTTATCTTAGTAAGAGTAACCACggtaaaacatatcaaaatc
aaaacattcaaatcaaATCCTTGATTCAATAAGTAGTAGACCTTTCTCAA
AGCTATTCACAATTGCCTGTGTGTTATTTAAAGCTTTTGCAATCCTTGTA
GTTCTTTTCATTCAAATGTCCTCGTAATGAtcttaaaaacttaaatatcc
actaaaatgctcaaaataaaaatcataagTTATGTTTCGACCGATGAGTC
CATGGGTATTGATGAAACAGCCCGATATAAGTCGAAATGCATCATTTTTA
TTACCTAGCTTAATTTGGTAGAAAAGCTTGATCAATTCATGAGAGTAATT
GGTATGATCAGTTGCTTTGAAATAAAGAAGTACAGTATGCTATCATTAAT
ATTTCGCAGAATCATGTTGATTGATAACAAACCTAACAAAGCCCCCTTTC
GAGCTCTCTTCTTTGATATCCTTGCAAACCTTTCAGTTCGTGATTGAGAG
AGTGAGATATTTTTTCTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044683XLOC_044683Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071967-exon-scaffold_65-1491911889:272249..272766TCONS_00071967-exon-scaffold_65-1491911889:272249..272766Clytia hemisphaericaexon
TCONS_00071967-exon-scaffold_65-1510915933:272249..272766TCONS_00071967-exon-scaffold_65-1510915933:272249..272766Clytia hemisphaericaexon
TCONS_00071967-exon-scaffold_65-1575043694:272249..272766TCONS_00071967-exon-scaffold_65-1575043694:272249..272766Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_65supercontigscaffold_65:272249..272766 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.615064	0.613829	1.56331	1.15117	1.85801	1.34587	1.47612	1.38193	0.967521	1.19843	0	0.688194	0.534518	0	0.456369	2.2668	1.00755	0.56014	0.854354	0.619446	1.71778	1.13708	0.658221	0.732098	0	1.66753	0.998905	1.61338	0.510839	1.15259
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071967 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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