TCONS_00071946 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071946
Unique NameTCONS_00071946
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length293

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071946 ID=TCONS_00071946|Name=TCONS_00071946|organism=Clytia hemisphaerica|type=transcript|length=293bp
TATCAAGATTGTAAATATGTGGAATGTCATCTTACcacatttacaatttc
ataggaaatatgATCTTTCGAATCGCTCGAAAACCcttgaaatataatat
ttccTATAGATTTCCGACTTAGGAAATTTATAATTTCGCCCAGTGCATAC
AGGTATGCTATCAAAAAATCTTGCAACGGATGTGCTGAAAAATCCAAGAT
CATTAATGATCAGACAGCCACCATCAAAGCCTTAGAGGAAGAAAATGATA
GACTTCAAAAGACAATCAATGCCGGCTTTCATCTGGATACTTA
Run BLAST on NCBI

transcript from alignment at scaffold_65:153095..153843-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071946 ID=TCONS_00071946|Name=TCONS_00071946|organism=Clytia hemisphaerica|type=transcript|length=749bp|location=Sequence derived from alignment at scaffold_65:153095..153843- (Clytia hemisphaerica)
TATCAAGATTGTAAATATGTGGAATGTCATCTTACCACATTTACAATTTC ATAGGAAATATGATCTTTCGAATCGCTCGAAAACCCTTGAAATATAATAT TTCCTATAGATTTCCGACTTAGGAAATTTATAATTTCGCCCAGTGCATAC AGGTATGCTATCAAAAAATCTTGCAACGGATGTGCTGAAAAATCCAAGAT CATTAATGATCAGACAGCCACCATCAAAGCCTTAGAGGAAGAAAATGATA GACTTCAAAAGACAATCAATGCCGGCTTTCATCTGGGTAAGTGTGCTACC GTGAAGTCGGGTAACTTGCATCAGTGGTGGCAAACATGCATAGCCTGACT GCATGACTGACCAATCAAAGCAGCAAAATTTCAAAACAAATTAACTACGC AGCCTCGCTCGCAACTCTACTGTACCATTTTTTTTTGGATTTAAGTTTGT ATTTTAATGACCAGACAGGTCATTCATTTGAGGGCTATGCATGTTTGCCT CCACTGATGCAAGTTTGAAAGACTTCACGGTATTATTTTATACTTTTATG AAGTTTTTAACTTTAAAAGTTTAGCAATAAATCTTCGAATTTTTTTGGTT TCATCCTAAAATCTGAAGGATTTTAACTCTCATTTCACTCTAAAAATTGA TTGGTGAACTTTTGAACACATGCTATTCTCTTCTATAGACATACAGACAG TGAGAATCTAATTATATATTAAATCTTGTTCCTTTTTTCTAGATACTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044668XLOC_044668Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071946-exon-scaffold_65-1575043694:153558..153843TCONS_00071946-exon-scaffold_65-1575043694:153558..153843Clytia hemisphaericaexon
TCONS_00071946-exon-scaffold_65-1575043694:153095..153101TCONS_00071946-exon-scaffold_65-1575043694:153095..153101Clytia hemisphaericaexon
TCONS_00071946-exon-scaffold_65-1510915933:153558..153843TCONS_00071946-exon-scaffold_65-1510915933:153558..153843Clytia hemisphaericaexon
TCONS_00071946-exon-scaffold_65-1510915933:153095..153101TCONS_00071946-exon-scaffold_65-1510915933:153095..153101Clytia hemisphaericaexon
TCONS_00071946-exon-scaffold_65-1491911889:153558..153843TCONS_00071946-exon-scaffold_65-1491911889:153558..153843Clytia hemisphaericaexon
TCONS_00071946-exon-scaffold_65-1491911889:153095..153101TCONS_00071946-exon-scaffold_65-1491911889:153095..153101Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_65supercontigscaffold_65:153095..153843 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.421104 2.46386 0 0 11.9255 10.2177 29.7768 18.2465 17.388 18.8624 20.0518 15.9858 14.5633 12.4811 22.2379 23.8646 9.48363 19.1168 9.84814 15.9265 17.1002 10.724 10.1394 12.7299 28.9357 34.2981 16.1677 22.1845 16.8261 17.6194
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071946 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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