TCONS_00071946 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071946
Unique NameTCONS_00071946
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length293

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071946 ID=TCONS_00071946|Name=TCONS_00071946|organism=Clytia hemisphaerica|type=transcript|length=293bp
TATCAAGATTGTAAATATGTGGAATGTCATCTTACcacatttacaatttc
ataggaaatatgATCTTTCGAATCGCTCGAAAACCcttgaaatataatat
ttccTATAGATTTCCGACTTAGGAAATTTATAATTTCGCCCAGTGCATAC
AGGTATGCTATCAAAAAATCTTGCAACGGATGTGCTGAAAAATCCAAGAT
CATTAATGATCAGACAGCCACCATCAAAGCCTTAGAGGAAGAAAATGATA
GACTTCAAAAGACAATCAATGCCGGCTTTCATCTGGATACTTA
Run BLAST on NCBI

transcript from alignment at scaffold_65:153095..153843-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071946 ID=TCONS_00071946|Name=TCONS_00071946|organism=Clytia hemisphaerica|type=transcript|length=749bp|location=Sequence derived from alignment at scaffold_65:153095..153843- (Clytia hemisphaerica)
TATCAAGATTGTAAATATGTGGAATGTCATCTTACCACATTTACAATTTC
ATAGGAAATATGATCTTTCGAATCGCTCGAAAACCCTTGAAATATAATAT
TTCCTATAGATTTCCGACTTAGGAAATTTATAATTTCGCCCAGTGCATAC
AGGTATGCTATCAAAAAATCTTGCAACGGATGTGCTGAAAAATCCAAGAT
CATTAATGATCAGACAGCCACCATCAAAGCCTTAGAGGAAGAAAATGATA
GACTTCAAAAGACAATCAATGCCGGCTTTCATCTGGGTAAGTGTGCTACC
GTGAAGTCGGGTAACTTGCATCAGTGGTGGCAAACATGCATAGCCTGACT
GCATGACTGACCAATCAAAGCAGCAAAATTTCAAAACAAATTAACTACGC
AGCCTCGCTCGCAACTCTACTGTACCATTTTTTTTTGGATTTAAGTTTGT
ATTTTAATGACCAGACAGGTCATTCATTTGAGGGCTATGCATGTTTGCCT
CCACTGATGCAAGTTTGAAAGACTTCACGGTATTATTTTATACTTTTATG
AAGTTTTTAACTTTAAAAGTTTAGCAATAAATCTTCGAATTTTTTTGGTT
TCATCCTAAAATCTGAAGGATTTTAACTCTCATTTCACTCTAAAAATTGA
TTGGTGAACTTTTGAACACATGCTATTCTCTTCTATAGACATACAGACAG
TGAGAATCTAATTATATATTAAATCTTGTTCCTTTTTTCTAGATACTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044668XLOC_044668Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071946-exon-scaffold_65-1575043694:153558..153843TCONS_00071946-exon-scaffold_65-1575043694:153558..153843Clytia hemisphaericaexon
TCONS_00071946-exon-scaffold_65-1575043694:153095..153101TCONS_00071946-exon-scaffold_65-1575043694:153095..153101Clytia hemisphaericaexon
TCONS_00071946-exon-scaffold_65-1510915933:153558..153843TCONS_00071946-exon-scaffold_65-1510915933:153558..153843Clytia hemisphaericaexon
TCONS_00071946-exon-scaffold_65-1510915933:153095..153101TCONS_00071946-exon-scaffold_65-1510915933:153095..153101Clytia hemisphaericaexon
TCONS_00071946-exon-scaffold_65-1491911889:153558..153843TCONS_00071946-exon-scaffold_65-1491911889:153558..153843Clytia hemisphaericaexon
TCONS_00071946-exon-scaffold_65-1491911889:153095..153101TCONS_00071946-exon-scaffold_65-1491911889:153095..153101Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_65supercontigscaffold_65:153095..153843 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.421104	2.46386	0	0	11.9255	10.2177	29.7768	18.2465	17.388	18.8624	20.0518	15.9858	14.5633	12.4811	22.2379	23.8646	9.48363	19.1168	9.84814	15.9265	17.1002	10.724	10.1394	12.7299	28.9357	34.2981	16.1677	22.1845	16.8261	17.6194
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071946 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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