Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071935 ID=TCONS_00071935|Name=TCONS_00071935|organism=Clytia hemisphaerica|type=transcript|length=2338bpRun BLAST on NCBI transcript from alignment at scaffold_65:28348..32425- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00071935 ID=TCONS_00071935|Name=TCONS_00071935|organism=Clytia hemisphaerica|type=transcript|length=4078bp|location=Sequence derived from alignment at scaffold_65:28348..32425- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Blast
BLAST of TCONS_00071935 vs. Swiss-Prot (Human)
Match: FAT1 (Protocadherin Fat 1 OS=Homo sapiens GN=FAT1 PE=1 SV=2) HSP 1 Score: 136.346 bits (342), Expect = 1.918e-32 Identity = 128/429 (29.84%), Postives = 207/429 (48.25%), Query Frame = 3 Query: 3 IDLNDNNPVFQISRASVNVSEGALRYSSIYQIYATDADSGINGEISYSFTKGNDLKRFGINNK-GMIYLINPLDYESVRVYQLHVIAEDRGSPSRSSELIIEVLVQDLNDLSPIFTQSVYNYVLSPTQAPSDTLFTVYAFDHD-RRDRFLRYTIIGSLANKHFRI-SFGGSIQLIRTLPLTLQPEFQFLVQATDFGSPAPRSGFAEVIITSKGAINESHKFNFERCPRTLRIKEN---SLEFLEGDPQLLLTDSSNTNH------TFSITNNDANFRVSPQGNIVIVNQLDYEIKQFQELEIKASNSKGFEARCFVNVFIEDVNDNSPRAVVIPAVARITTNFPTRS--LVAYLRIQDEDSVNLAFTYSIVSGNDAGLFRIEDGSIFTTKCISDKA--IGSYTLSISVYDGVFTTKQSLSVVIYKATNK 1241 +D+NDN PVF+ VSE L + + Q+YA D N EI+YS GN+ +F I++K G +++I LDYES Y L V A D G+PS S + V V D+ND +P+F+Q Y V+S ++ TV A D D + + Y+II F I G +++ + L + VQA+D GSP PR V I +N++ F R ++ I+EN L QL++TD ++++ T N++ F V+PQG ++ + + + K L++K +++ + + I + ++ ++P IT++ S ++ + D+D V TYS+ D LF + S K I+ K IG Y L++SV DG FTT ++V I + T + Sbjct: 3221 LDINDNPPVFEYREYGATVSEDILVGTEVLQVYAASRDIEANAEITYSIISGNEHGKFSIDSKTGAVFIIENLDYESSHEYYLTVEATDGGTPSLSDVATVNVNVTDINDNTPVFSQDTYTTVISEDAVLEQSVITVMADDADGPSNSHIHYSIIDGNQGSSFTIDPVRGEVKVTKLLDRETISGYTLTVQASDNGSP-PRVNTTTVNIDVSD-VNDNAPV-FSRGNYSVIIQENKPVGFSVL----QLVVTDEDSSHNGPPFFFTIVTGNDEKAFEVNPQGVLLTSSAIKRKEKDHYLLQVKVADNGKPQLSSLTYIDIRVIEESIYPPAILPLEIFITSSGEEYSGGVIGKIHATDQD-VYDTLTYSLDPQMD-NLFSV---SSTGGKLIAHKKLDIGQYLLNVSVTDGKFTTVADITVHIRQVTQE 3637 HSP 2 Score: 114.39 bits (285), Expect = 1.139e-25 Identity = 110/331 (33.23%), Postives = 166/331 (50.15%), Query Frame = 3 Query: 6 DLNDNNPVFQISRASVNVSEGALRYSSIYQIYATDADSGINGEISYSFTKGNDLK---RFGINNK-GMIYLINPLDYESVRVYQLHVIAEDRGSPSRSSELIIEVLVQDLNDLSPIFTQSVYNYVLSPTQAPSDTLFT-VYAFDHDRRD-RFLRYTIIGSLANKHFRI-SFGGSIQLIRTLPLTLQPEFQFLVQATD--FGSPAPRSGFAEVIITSKGAINESHKFNFERCPRTLRIKENS-LEFLEGDPQLLLTDSSNTNH-TFSITNNDAN--FRVSPQGNIVIVNQLDYEIKQFQELEIK--ASNSKGFEARCFVNVFIEDVNDNSPR 953 D+NDN PVF +V +SE ++ +S+ Q+ ATD+DS N ISY GN K F +++ G+I L+ LDYE R + + V A D G P+ SS++I+ V V DLND P+F Q +Y +S AP T V A+D D D L+Y+I+ +KHF I S G I L L+P + + +D F S +V +T G H F + + + EN+ L L + + DS H T+ I N+ A F ++ +G I + +LD E + + ++ A ++ G A C VNV + D NDN+P+ Sbjct: 2275 DINDNPPVFAQQSYAVTLSEASVIGTSVVQVRATDSDSEPNRGISYQMF-GNHSKSHDHFHVDSSTGLISLLRTLDYEQSRQHTIFVRAVDGGMPTLSSDVIVTVDVTDLNDNPPLFEQQIYEARIS-EHAPHGHFVTCVKAYDADSSDIDKLQYSILSGNDHKHFVIDSATGIITLSNLHRHALKPFYSLNLSVSDGVFRSS------TQVHVTVIGG--NLHSPAFLQNEYEVELAENAPLHTLVMEVKTTDGDSGIYGHVTYHIVNDFAKDRFYINERGQIFTLEKLDRETPAEKVISVRLMAKDAGGKVAFCTVNVILTDDNDNAPQ 2595 HSP 3 Score: 109.383 bits (272), Expect = 4.441e-24 Identity = 120/410 (29.27%), Postives = 182/410 (44.39%), Query Frame = 3 Query: 3 IDLNDNNPVFQISRASVNVSEGALRYSSIYQIYATDADSGINGEISYSFTKGNDLKRFGIN-NKGMIYLINPLDYESVRVYQLHVIAEDRGSPSRSSELIIEVLVQDLNDLSPIFTQSVYNYVLSPTQAPSDTLFTVYAFDHDRR-DRFLRYTIIGSLANKHFRIS-FGGSIQLIRTLPLTLQPEFQFLVQATDFGSPAPRSGFAEVIITSKGAINESHKFNFERCPRTLRIKENSLEFLEGDPQLLLTDSS-----NTNHTFSIT--NNDANFRV-SPQGNIVIVNQLDYEIKQFQELEIKASN--SKGFEARCFVNVFIEDVNDNSPRAVVIPAVARITTNFPTRSLVAYLRIQDEDSV-NLAFTYSIVSGNDAGLFRIED--GSIFTTKCISDKAIGSYTLSISVYD 1184 +D NDN+PV + + S + E L I QI ATDAD N EI+Y+ G+ ++F +N + G + PLD E VY L V A D G R + I + ++D+ND +P F+ Y + P L V A D D +R + Y++I S A+ F I+ G IQL + L LQ + ++A D G P + VI++ + F + T+ S + L G L + +S N T+SI N F + S G + I+ LDYE L ++A++ + VNV + D+NDN+P I+ + V + D D N YSI+ GN F I+ G + TK + + I YTL++ D Sbjct: 3014 LDANDNSPVCEKTLYSDTIPEDVLPGKLIMQISATDADIRSNAEITYTLL-GSGAEKFKLNPDTGELKTSTPLDREEQAVYHLLVRATDGG--GRFCQASIVLTLEDVNDNAPEFSADPYAITVFENTEPGTLLTRVQATDADAGLNRKILYSLIDS-ADGQFSINELSGIIQLEKPLDRELQAVYTLSLKAVDQGLPRRLTATGTVIVSVLDINDNPPVFEYREYGATV-----SEDILVGTEVLQVYAASRDIEANAEITYSIISGNEHGKFSIDSKTGAVFIIENLDYESSHEYYLTVEATDGGTPSLSDVATVNVNVTDINDNTPVFSQDTYTTVISEDAVLEQSVITVMADDADGPSNSHIHYSIIDGNQGSSFTIDPVRGEVKVTKLLDRETISGYTLTVQASD 3414 HSP 4 Score: 107.071 bits (266), Expect = 2.070e-23 Identity = 119/421 (28.27%), Postives = 183/421 (43.47%), Query Frame = 3 Query: 3 IDLNDNNPVFQISRASVNVSEGALRYSSIYQIYATDADSGINGEISYSFTKGND---LKRFGINNK-GMIYLINPLDYESVRVYQLHVIAEDRGSPSRSSELIIEVLVQDLNDLSPIFTQSVYNYVLSPTQAPSDTLFTVYAFDHDR-RDRFLRYTI-IGSLANKHFRISFGGSIQLIRTLPLTLQPEFQFLVQATDFGSPAPRSGFAEVIITSKGAINESHKFNFERCPRTLRIKENSLEFLE----GDPQLLLTDSSNTNHTFSITNNDAN--FRVSPQ-GNIVIVNQLDYEIKQFQELEIKASNSKGFEARCFVNVFIEDVNDNSP------------RAVVIPAVARITTNFPTRSLVAYLRIQDEDSVNLAFTYSIVSGNDAGLFRIED--GSIFTTKCISDKAIGSYTLSISVYD 1184 ID ND+ P F S+ V + E + I QI A D D ++ Y+ D LK+F ++ G +Y LD+E+V + L V+ D+ P + + I V V D ND +P FT S Y + + A + V A D D+ ++ + Y+I G++ N GSI+ + L + Q E+ +V+ATD GSP P S V I A N S KF KE S+E E G ++T S ++ + I + + F ++P G I+ LD+E L I+ +N G V V ++D NDN+P + I +V N P LV D+DS N Y IV + F I+ G+I T + + + ++ V+D Sbjct: 1447 IDTNDHRPQFSTSKYEVVIPEDTAPETEILQISAVDQDE--KNKLIYTLQSSRDPLSLKKFRLDPATGSLYTSEKLDHEAVHQHTLTVMVRDQDVPVKRNFARIVVNVSDTNDHAPWFTASSYKGRVYESAAVGSVVLQVTALDKDKGKNAEVLYSIESGNIGNSFMIDPVLGSIKTAKELDRSNQAEYDLMVKATDKGSP-PMSEITSVRIFVTIADNASPKFTS---------KEYSVELSETVSIGSFVGMVTAHSQSSVVYEIKDGNTGDAFDINPHSGTIITQKALDFETLPIYTLIIQGTNMAGLSTNTTVLVHLQDENDNAPVFMQAEYTGLISESASINSVVLTDRNVP---LVIRAADADKDS-NALLVYHIVEPSVHTYFAIDSSTGAIHTVLSLDYEETSIFHFTVQVHD 1851 HSP 5 Score: 104.76 bits (260), Expect = 9.159e-23 Identity = 112/411 (27.25%), Postives = 183/411 (44.53%), Query Frame = 3 Query: 6 DLNDNNPVFQISRASVNVSEGALRYSSIYQIYATDADSGINGEISYSFTKGND---LKRFGINNK-GMIYLINPLDYESVRVYQLHVIAEDRGSPSR-SSELIIEVLVQDLNDLSPIFTQSVYNYVLSPTQAPSDTLFTVYAFDHDRRD--RFLRYTIIGSLANKHFRI-SFGGSIQLIRTLPLTLQPEFQFLVQATDFGSPAPRSGFAEVIITSKGAINESHKFNFERCPRTLRIKENSLEFLEGD--PQLLLTDS---SNTNHTFSITNNDA-NFRVSPQ-GNIVIVNQLDYEIKQFQELEIKASNSKGFEARCFVNVFIEDVNDNSPRAVVIPAVARITTNFPTRSLVAYLRIQDEDS-VNLAFTYSIVSGNDAGLFRIED--GSIFTTKCISDKAIGSYTLSISVYD 1184 D NDN+PVF+ S + E S + QI A+DADSG NG++ YS + ++ F IN + G I + LD+E YQ+ V+A D G + SS I++V V D+ND P FT +Y +S + + D D + R + Y I G F + + ++ PL + +L+ T A F+ I ++ + N C +TL + L G Q+ TD+ SN T+++ + A F+++P G + LD E + L ++A++ G + + + +EDVNDN+P P + N +L+ ++ D D+ +N YS++ D G F I + G I K + + YTLS+ D Sbjct: 2801 DANDNSPVFESSPYEAFIVENLPGGSRVIQIRASDADSGTNGQVMYSLDQSQSVEVIESFAINMETGWITTLKELDHEKRDNYQIKVVASDHGEKIQLSSTAIVDVTVTDVNDSPPRFTAEIYKGTVSEDDPQGGVIAILSTTDADSEEINRQVTYFITGGDPLGQFAVETIQNEWKVYVKKPLDREKRDNYLLTIT-----ATDGTFSSKAIVEVKVLDAND--NSPVCEKTLYSDTIPEDVLPGKLIMQISATDADIRSNAEITYTLLGSGAEKFKLNPDTGELKTSTPLDREEQAVYHLLVRATDGGGRFCQASIVLTLEDVNDNAPEFSADPYAITVFENTEPGTLLTRVQATDADAGLNRKILYSLIDSAD-GQFSINELSGIIQLEKPLDRELQAVYTLSLKAVD 3203 HSP 6 Score: 93.5893 bits (231), Expect = 2.555e-19 Identity = 112/436 (25.69%), Postives = 184/436 (42.20%), Query Frame = 3 Query: 3 IDLNDNNPVFQISRASVNVSEGALRYSSIYQIYATDADSGINGEISYSFTKGNDLKRFGINN-KGMIYLINPLDYESVRVYQLHVIAED--RGSPSRSSELIIEVLVQDLNDLSPIFTQSVYNYVLSPTQAPSDTLFTVYAFDHD-RRDRFLRYTIIGSLANKHFRISFGGSIQLIRTLPLTLQPEFQFLVQATDFGSPAPRSGFAEVIITSKGAINESHKFNFERCPRTLRIKENSLEFLEGDP--QLLLTDSSNTNHT-------FSITNND--ANFRVSPQ-GNIVIVNQLDYEIKQFQELEIKASNSKGFEARCFVNVFI--EDVNDNSPRAVVIPAVARITTNFPTRSLVAYLRIQDED-SVNLAFTYSIVSGNDAGLFRI--EDGSIFTT-KCISDKAIGSYTLSISVYDGVFTTKQSLSVVIYKATNKN 1244 +D NDN P F V VSE +S I Q+ ATD D G NG ++YS D F I++ G++ + PLD E + L + A D R P S ++++V ++D+ND P F Y + + + A D D + +RY+++ G++++++ L + + V+A D G P S V + H F +KE++ P L++T S++ +SI + F++ + G I ++LD E L + A++ F+ ++I EDVNDN+P+ I N P V + D D S N Y I SGN G F I + G I TT + + + + L ++V D K +++ VI K ++N Sbjct: 813 VDANDNPPEFLQESYFVEVSEDKEVHSEIIQVEATDKDLGPNGHVTYSIV--TDTDTFSIDSVTGVVNIARPLDRELQHEHSLKIEARDQAREEPQLFSTVVVKVSLEDVNDNPPTFIPPNYRVKVREDLPEGTVIMWLEAHDPDLGQSGQVRYSLLDHGEGNFDVDKLSGAVRIVQQLDFEKKQVYNLTVRAKDKGKPVSLSSTCYVEVEVVDVNENLHPPVFSSFVEKGTVKEDA-------PVGSLVMTVSAHDEDARRDGEIRYSIRDGSGVGVFKIGEETGVIETSDRLDRESTSHYWLTVFATDQGVVPLSSFIEIYIEVEDVNDNAPQTSEPVYYPEIMENSPKDVSVVQIEAFDPDSSSNDKLMYKITSGNPQGFFSIHPKTGLITTTSRKLDREQQDEHILEVTVTDNGSPPKSTIARVIVKILDEN 1239 HSP 7 Score: 93.5893 bits (231), Expect = 2.689e-19 Identity = 116/406 (28.57%), Postives = 191/406 (47.04%), Query Frame = 3 Query: 51 VNVSEGALRYSSIYQIYATDADSGINGEISYSFTKGNDLKRFGINNK-GMIYLINPLDYESVRVYQLHVIAEDRGSPSRSSELIIEVLVQDLNDLSPIFTQSVYNYVLSPTQAPSDTLFTVYAFDHD-RRDRFLRYTIIGSLANKHFRI-SFGGSIQLIRTLPLTLQPEFQFLVQATDFGSPAPRSGFAEVIITSKGAINESHKFNFERCPRTLRIKENSLE-----FLEG-DPQLLLTDSSNTNHTFSITNNDANFRVSP-QGNIVIVNQLDYEIKQFQELEIKASNSKG----FEARCFVNVFIEDVNDNSPRAVVIPAVARITT--NFPTRSLVAYLRIQDEDS-VNLAFTYSIVSGNDAGLFRI--EDGSIFTTKCISDKAIGSYTLSISVYDGVFTTKQSL 1211 + V E SS+ + +TD D+G NG++ Y+ + GN+ F I+ + GM+ +++PLD E+ Y L++ D G P +++ ++ V+V D ND P F Q Y +S + + V A D D + + Y+I+ F I S G + + R L LQ E ++A D P+ V+ S +N++ F ++++E+ E +LE DP L S ++ + + + NF V G + IV QLD+E KQ L ++A + KG + C+V V + DVN+N V V + T + P SLV + DED+ + YSI G+ G+F+I E G I T+ + ++ Y L+ VF T Q + Sbjct: 724 IQVKENQPVGSSVIFMNSTDLDTGFNGKLVYAVSGGNEDSCFMIDMETGMLKILSPLDRETTDKYTLNITVYDLGIPQKAAWRLLHVVVVDANDNPPEFLQESYFVEVSEDKEVHSEIIQVEATDKDLGPNGHVTYSIVTD--TDTFSIDSVTGVVNIARPLDRELQHEHSLKIEARDQAREEPQLFSTVVVKVSLEDVNDNPP-TFIPPNYRVKVREDLPEGTVIMWLEAHDPD--LGQSGQVRYSL-LDHGEGNFDVDKLSGAVRIVQQLDFEKKQVYNLTVRAKD-KGKPVSLSSTCYVEVEVVDVNENLHPPVFSSFVEKGTVKEDAPVGSLVMTVSAHDEDARRDGEIRYSIRDGSGVGVFKIGEETGVIETSDRLDRESTSHYWLT------VFATDQGV 1116 HSP 8 Score: 84.7297 bits (208), Expect = 1.617e-16 Identity = 114/431 (26.45%), Postives = 184/431 (42.69%), Query Frame = 3 Query: 3 IDLNDNNPVFQISRASVNVSEGALRYSSIYQIYATDADSGINGEISYSFTKGNDLKRFGIN-NKGMIYLINPLDYESVRVYQLHVIAEDR-----GSPSRSSELIIEVLVQDLNDLSPIFTQSVYNYVLSPTQA---PSDTLFTVYAFDHDRRDRFLRYTIIGSLANKHFRI--SFGGS----IQLIRTLPLTLQP-EFQFLVQATDFGSPAPRSGFAEVIITSKGAINESHKFNFERCPRTLRIKENSLEFLEGDPQLLLTDS----SNTNHTFSITNNDANFRVS-PQGNIVIVNQLDYEIKQFQELEIKASNSKGFEARCFVNVFIEDVNDNSPRAVVIPAVARITTNFPTRSLVAYLRIQDED-SVNLAFTYSIVSGNDAGLFRIED--GSIFTTKCISDKAIGS-YTLSISVYDGVFTTKQSLSVV 1220 +D ND P+F + SV++ E +SI ++ ATDAD G NGE YSF D+ F I+ G+I L LDY ++Y++ ++A DR GS SS + V ++ N+ +P+ T LSP++ P+ + TV D +I+ + FR SF GS ++ I + P + +QA D G+P S + +TS ++ FE+ I EF + +++ + S+ + F T A F ++ G I I+ + + ELE+ S+ K A V V + N N P A N P + V L D D N TYSI + N F I+ G++ T++ + + + YTL I D ++ + V+ Sbjct: 140 LDTNDLRPLFSPTSYSVSLPENTAIRTSIARVSATDADIGTNGEFYYSFKDRTDM--FAIHPTSGVIVLTGRLDYLETKLYEMEILAADRGMKLYGSSGISSMAKLTVHIEQANECAPVITA----VTLSPSELDRDPAYAIVTVDDCDQGANGDIASLSIVAGDLLQQFRTVRSFPGSKEYKVKAIGGIDWDSHPFGYNLTLQAKDKGTPPQFSSVKVIHVTSPQF--KAGPVKFEKDVYRAEIS----EFAPPNTPVVMVKAIPAYSHLRYVFKSTPGKAKFSLNYNTGLISILEPVKRQQAAHFELEVTTSDRK---ASTKVLVKVLGANSNPPEFTQTAYKAAFDENVPIGTTVMSLSAVDPDEGENGYVTYSIANLNHVP-FAIDHFTGAVSTSENLDYELMPRVYTLRIRASDWGLPYRREVEVL 554 The following BLAST results are available for this feature:
BLAST of TCONS_00071935 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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